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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 668, 1585 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1318 |
| AccBSI | CCGCTC | 1 cut(s) | 1715 |
| AciI | CCGC | 3 cut(s) | 779, 1262, 1715 |
| AcsI | RAATTY | 1 cut(s) | 1478 |
| AcuI | CTGAAG | 1 cut(s) | 968 |
| AdeI | CACNNNGTG | 1 cut(s) | 713 |
| AfaI | GTAC | 2 cut(s) | 768, 1663 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 74, 1318 |
| AflIII | ACRYGT | 1 cut(s) | 619 |
| AgeI | ACCGGT | 1 cut(s) | 257 |
| AjnI | CCWGG | 2 cut(s) | 328, 343 |
| AluBI | AGCT | 8 cut(s) | 47, 108, 179, 215, 281, 421, 1040, 1757 |
| AluI | AGCT | 8 cut(s) | 47, 108, 179, 215, 281, 421, 1040, 1757 |
| Alw26I | GTCTC | 2 cut(s) | 1251, 1287 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 182, 818, 1043, 1142 |
| AoxI | GGCC | 3 cut(s) | 198, 663, 1148 |
| ApeKI | GCWGC | 4 cut(s) | 44, 105, 179, 1037 |
| ApoI | RAATTY | 1 cut(s) | 1478 |
| AseI | ATTAAT | 3 cut(s) | 35, 492, 572 |
| AsiGI | ACCGGT | 1 cut(s) | 257 |
| AspS9I | GGNCC | 3 cut(s) | 363, 518, 1290 |
| AsuHPI | GGTGA | 3 cut(s) | 25, 245, 1823 |
| AvaII | GGWCC | 3 cut(s) | 363, 518, 1290 |
| BanI | GGYRCC | 2 cut(s) | 668, 1585 |
| BbsI | GAAGAC | 2 cut(s) | 487, 1845 |
| BbvI | GCAGC | 4 cut(s) | 56, 117, 166, 1049 |
| BccI | CCATC | 5 cut(s) | 76, 224, 452, 979, 1597 |
| BciT130I | CCWGG | 2 cut(s) | 330, 345 |
| BciVI | GTATCC | 3 cut(s) | 699, 798, 1439 |
| BclI | TGATCA | 2 cut(s) | 1125, 1237 |
| BcoDI | GTCTC | 2 cut(s) | 1251, 1287 |
| BfaI | CTAG | 6 cut(s) | 51, 216, 278, 282, 1619, 1758 |
| BfmI | CTRYAG | 1 cut(s) | 1213 |
| BfuI | GTATCC | 3 cut(s) | 699, 798, 1439 |
| BisI | GCNGC | 4 cut(s) | 45, 106, 180, 1038 |
| BlsI | GCNGC | 4 cut(s) | 46, 107, 181, 1039 |
| BmcAI | AGTACT | 1 cut(s) | 1663 |
| Bme1390I | CCNGG | 2 cut(s) | 330, 345 |
| Bme18I | GGWCC | 3 cut(s) | 363, 518, 1290 |
| BmgT120I | GGNCC | 3 cut(s) | 363, 518, 1290 |
| BmiI | GGNNCC | 3 cut(s) | 670, 1551, 1587 |
| BmrFI | CCNGG | 2 cut(s) | 330, 345 |
| BmsI | GCATC | 4 cut(s) | 409, 938, 1249, 1513 |
| BpiI | GAAGAC | 2 cut(s) | 487, 1845 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1288, 1320 |
| BpuEI | CTTGAG | 1 cut(s) | 1864 |
| BsaBI | GATNNNNATC | 2 cut(s) | 989, 1374 |
| BsaJI | CCNNGG | 2 cut(s) | 1573, 1827 |
| BsaWI | WCCGGW | 1 cut(s) | 257 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1043, 1073, 1578, 1608 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 74, 1318 |
| Bse118I | RCCGGY | 2 cut(s) | 257, 665 |
| Bse1I | ACTGG | 1 cut(s) | 812 |
| Bse3DI | GCAATG | 4 cut(s) | 230, 781, 886, 1312 |
| Bse8I | GATNNNNATC | 2 cut(s) | 989, 1374 |
| BseBI | CCWGG | 2 cut(s) | 330, 345 |
| BseDI | CCNNGG | 2 cut(s) | 1573, 1827 |
| BseGI | GGATG | 8 cut(s) | 252, 787, 829, 1012, 1084, 1092, 1264, 1807 |
| BseJI | GATNNNNATC | 2 cut(s) | 989, 1374 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 74, 1318 |
| BseMI | GCAATG | 4 cut(s) | 230, 781, 886, 1312 |
| BseMII | CTCAG | 4 cut(s) | 225, 350, 810, 1098 |
| BseNI | ACTGG | 1 cut(s) | 812 |
| BseRI | GAGGAG | 1 cut(s) | 1702 |
| BseXI | GCAGC | 4 cut(s) | 56, 117, 166, 1049 |
| BshFI | GGCC | 3 cut(s) | 200, 665, 1150 |
| BshNI | GGYRCC | 2 cut(s) | 668, 1585 |
| BshTI | ACCGGT | 1 cut(s) | 257 |
| BsiSI | CCGG | 2 cut(s) | 258, 666 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 74, 1318 |
| BsmAI | GTCTC | 2 cut(s) | 1251, 1287 |
| BsmI | GAATGC | 2 cut(s) | 26, 46 |
| BsnI | GGCC | 3 cut(s) | 200, 665, 1150 |
| Bsp143I | GATC | 3 cut(s) | 1125, 1237, 1456 |
| Bsp19I | CCATGG | 1 cut(s) | 1573 |
| BspACI | CCGC | 3 cut(s) | 779, 1262, 1715 |
| BspANI | GGCC | 3 cut(s) | 200, 665, 1150 |
| BspCNI | CTCAG | 4 cut(s) | 224, 351, 811, 1099 |
| BspLI | GGNNCC | 3 cut(s) | 670, 1551, 1587 |
| BspT107I | GGYRCC | 2 cut(s) | 668, 1585 |
| BsrBI | CCGCTC | 1 cut(s) | 1715 |
| BsrDI | GCAATG | 4 cut(s) | 230, 781, 886, 1312 |
| BsrFI | RCCGGY | 2 cut(s) | 257, 665 |
| BsrI | ACTGG | 1 cut(s) | 812 |
| BssAI | RCCGGY | 2 cut(s) | 257, 665 |
| BssECI | CCNNGG | 2 cut(s) | 1573, 1827 |
| BssMI | GATC | 3 cut(s) | 1125, 1237, 1456 |
| BssT1I | CCWWGG | 2 cut(s) | 1573, 1827 |
| Bst2UI | CCWGG | 2 cut(s) | 330, 345 |
| Bst4CI | ACNGT | 1 cut(s) | 545 |
| Bst6I | CTCTTC | 2 cut(s) | 944, 1161 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 575 |
| BstDEI | CTNAG | 6 cut(s) | 211, 359, 819, 1107, 1361, 1433 |
| BstDSI | CCRYGG | 1 cut(s) | 1573 |
| BstEII | GGTNACC | 1 cut(s) | 634 |
| BstF5I | GGATG | 8 cut(s) | 252, 787, 829, 1012, 1084, 1092, 1264, 1807 |
| BstKTI | GATC | 3 cut(s) | 1128, 1240, 1459 |
| BstMAI | GTCTC | 2 cut(s) | 1251, 1287 |
| BstMBI | GATC | 3 cut(s) | 1125, 1237, 1456 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 418, 575, 677 |
| BstNI | CCWGG | 2 cut(s) | 330, 345 |
| BstNSI | RCATGY | 2 cut(s) | 623, 798 |
| BstPI | GGTNACC | 1 cut(s) | 634 |
| BstSCI | CCNGG | 2 cut(s) | 328, 343 |
| BstSFI | CTRYAG | 1 cut(s) | 1213 |
| BstV1I | GCAGC | 4 cut(s) | 56, 117, 166, 1049 |
| BstV2I | GAAGAC | 2 cut(s) | 487, 1845 |
| BsuI | GTATCC | 3 cut(s) | 699, 798, 1439 |
| BsuRI | GGCC | 3 cut(s) | 200, 665, 1150 |
| BtgI | CCRYGG | 1 cut(s) | 1573 |
| BtgZI | GCGATG | 1 cut(s) | 243 |
| BtsCI | GGATG | 8 cut(s) | 252, 787, 829, 1012, 1084, 1092, 1264, 1807 |
| BtsIMutI | CAGTG | 1 cut(s) | 1140 |
| CaiI | CAGNNNCTG | 4 cut(s) | 182, 818, 1043, 1142 |
| Cfr10I | RCCGGY | 2 cut(s) | 257, 665 |
| Cfr13I | GGNCC | 3 cut(s) | 363, 518, 1290 |
| CsiI | ACCWGGT | 1 cut(s) | 343 |
| Csp6I | GTAC | 2 cut(s) | 767, 1662 |
| CspAI | ACCGGT | 1 cut(s) | 257 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 355, 390, 907, 942 |
| CviQI | GTAC | 2 cut(s) | 767, 1662 |
| DdeI | CTNAG | 6 cut(s) | 211, 359, 819, 1107, 1361, 1433 |
| DpnI | GATC | 3 cut(s) | 1127, 1239, 1458 |
| DpnII | GATC | 3 cut(s) | 1125, 1237, 1456 |
| DraI | TTTAAA | 1 cut(s) | 729 |
| DraIII | CACNNNGTG | 1 cut(s) | 713 |
| Eam1104I | CTCTTC | 2 cut(s) | 944, 1161 |
| EarI | CTCTTC | 2 cut(s) | 944, 1161 |
| Eco130I | CCWWGG | 2 cut(s) | 1573, 1827 |
| Eco147I | AGGCCT | 2 cut(s) | 200, 1150 |
| Eco47I | GGWCC | 3 cut(s) | 363, 518, 1290 |
| Eco57I | CTGAAG | 1 cut(s) | 968 |
| Eco91I | GGTNACC | 1 cut(s) | 634 |
| EcoO65I | GGTNACC | 1 cut(s) | 634 |
| EcoRII | CCWGG | 2 cut(s) | 328, 343 |
| EcoT14I | CCWWGG | 2 cut(s) | 1573, 1827 |
| EcoT22I | ATGCAT | 1 cut(s) | 571 |
| ErhI | CCWWGG | 2 cut(s) | 1573, 1827 |
| FbaI | TGATCA | 2 cut(s) | 1125, 1237 |
| Fnu4HI | GCNGC | 4 cut(s) | 45, 106, 180, 1038 |
| FokI | GGATG | 8 cut(s) | 259, 794, 836, 1019, 1079, 1091, 1271, 1814 |
| Fsp4HI | GCNGC | 4 cut(s) | 45, 106, 180, 1038 |
| FspBI | CTAG | 6 cut(s) | 51, 216, 278, 282, 1619, 1758 |
| GluI | GCNGC | 4 cut(s) | 45, 106, 180, 1038 |
| HaeIII | GGCC | 3 cut(s) | 200, 665, 1150 |
| HapII | CCGG | 2 cut(s) | 258, 666 |
| HincII | GTYRAC | 2 cut(s) | 1471, 1625 |
| HindII | GTYRAC | 2 cut(s) | 1471, 1625 |
| HindIII | AAGCTT | 1 cut(s) | 419 |
| HinfI | GANTC | 6 cut(s) | 470, 593, 853, 1244, 1333, 1823 |
| HpaI | GTTAAC | 1 cut(s) | 1471 |
| HpaII | CCGG | 2 cut(s) | 258, 666 |
| HphI | GGTGA | 3 cut(s) | 25, 245, 1823 |
| Hpy166II | GTNNAC | 2 cut(s) | 1471, 1625 |
| Hpy188I | TCNGA | 6 cut(s) | 300, 360, 469, 522, 820, 1354 |
| Hpy188III | TCNNGA | 4 cut(s) | 742, 838, 1129, 1241 |
| Hpy8I | GTNNAC | 2 cut(s) | 1471, 1625 |
| HpyCH4III | ACNGT | 1 cut(s) | 545 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 418, 575, 677 |
| HpyF3I | CTNAG | 6 cut(s) | 211, 359, 819, 1107, 1361, 1433 |
| Ksp22I | TGATCA | 2 cut(s) | 1125, 1237 |
| KspAI | GTTAAC | 1 cut(s) | 1471 |
| Kzo9I | GATC | 3 cut(s) | 1125, 1237, 1456 |
| LmnI | GCTCC | 6 cut(s) | 52, 220, 652, 919, 1390, 1549 |
| Lsp1109I | GCAGC | 4 cut(s) | 56, 117, 166, 1049 |
| LweI | GCATC | 4 cut(s) | 409, 938, 1249, 1513 |
| MabI | ACCWGGT | 1 cut(s) | 343 |
| MaeI | CTAG | 6 cut(s) | 51, 216, 278, 282, 1619, 1758 |
| MaeIII | GTNAC | 2 cut(s) | 347, 634 |
| MalI | GATC | 3 cut(s) | 1127, 1239, 1458 |
| MbiI | CCGCTC | 1 cut(s) | 1715 |
| MboI | GATC | 3 cut(s) | 1125, 1237, 1456 |
| MluCI | AATT | 9 cut(s) | 573, 892, 1055, 1423, 1478, 1486, 1654, 1669, 1876 |
| MlyI | GAGTC | 1 cut(s) | 1253 |
| MmeI | TCCRAC | 3 cut(s) | 782, 1786, 1815 |
| Mph1103I | ATGCAT | 1 cut(s) | 571 |
| MseI | TTAA | 7 cut(s) | 35, 492, 572, 600, 728, 1277, 1470 |
| MspA1I | CMGCKG | 1 cut(s) | 179 |
| MspI | CCGG | 2 cut(s) | 258, 666 |
| MspR9I | CCNGG | 2 cut(s) | 330, 345 |
| Mva1269I | GAATGC | 2 cut(s) | 26, 46 |
| MvaI | CCWGG | 2 cut(s) | 330, 345 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 418, 575, 677 |
| NcoI | CCATGG | 1 cut(s) | 1573 |
| NdeII | GATC | 3 cut(s) | 1125, 1237, 1456 |
| NlaIV | GGNNCC | 3 cut(s) | 670, 1551, 1587 |
| NsiI | ATGCAT | 1 cut(s) | 571 |
| NspI | RCATGY | 2 cut(s) | 623, 798 |
| PceI | AGGCCT | 2 cut(s) | 200, 1150 |
| PciI | ACATGT | 1 cut(s) | 619 |
| PctI | GAATGC | 2 cut(s) | 26, 46 |
| PfeI | GAWTC | 5 cut(s) | 470, 593, 853, 1333, 1823 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1318 |
| PinAI | ACCGGT | 1 cut(s) | 257 |
| PkrI | GCNGC | 4 cut(s) | 46, 107, 181, 1039 |
| PleI | GAGTC | 1 cut(s) | 1252 |
| PpsI | GAGTC | 1 cut(s) | 1252 |
| PscI | ACATGT | 1 cut(s) | 619 |
| PshBI | ATTAAT | 3 cut(s) | 35, 492, 572 |
| Psp6I | CCWGG | 2 cut(s) | 328, 343 |
| PspEI | GGTNACC | 1 cut(s) | 634 |
| PspGI | CCWGG | 2 cut(s) | 328, 343 |
| PspN4I | GGNNCC | 3 cut(s) | 670, 1551, 1587 |
| PspPI | GGNCC | 3 cut(s) | 363, 518, 1290 |
| PstNI | CAGNNNCTG | 4 cut(s) | 182, 818, 1043, 1142 |
| PvuII | CAGCTG | 1 cut(s) | 179 |
| RsaI | GTAC | 2 cut(s) | 768, 1663 |
| RsaNI | GTAC | 2 cut(s) | 767, 1662 |
| SaqAI | TTAA | 7 cut(s) | 35, 492, 572, 600, 728, 1277, 1470 |
| SatI | GCNGC | 4 cut(s) | 45, 106, 180, 1038 |
| Sau3AI | GATC | 3 cut(s) | 1125, 1237, 1456 |
| Sau96I | GGNCC | 3 cut(s) | 363, 518, 1290 |
| ScaI | AGTACT | 1 cut(s) | 1663 |
| SchI | GAGTC | 1 cut(s) | 1253 |
| ScrFI | CCNGG | 2 cut(s) | 330, 345 |
| SexAI | ACCWGGT | 1 cut(s) | 343 |
| SfaNI | GCATC | 4 cut(s) | 409, 938, 1249, 1513 |
| SfcI | CTRYAG | 1 cut(s) | 1213 |
| SgrAI | CRCCGGYG | 1 cut(s) | 257 |
| SinI | GGWCC | 3 cut(s) | 363, 518, 1290 |
| SmlI | CTYRAG | 1 cut(s) | 1843 |
| SmoI | CTYRAG | 1 cut(s) | 1843 |
| Sse9I | AATT | 9 cut(s) | 573, 892, 1055, 1423, 1478, 1486, 1654, 1669, 1876 |
| SseBI | AGGCCT | 2 cut(s) | 200, 1150 |
| SsiI | CCGC | 3 cut(s) | 779, 1262, 1715 |
| SspI | AATATT | 2 cut(s) | 394, 748 |
| SspMI | CTAG | 6 cut(s) | 51, 216, 278, 282, 1619, 1758 |
| StuI | AGGCCT | 2 cut(s) | 200, 1150 |
| StyD4I | CCNGG | 2 cut(s) | 328, 343 |
| StyI | CCWWGG | 2 cut(s) | 1573, 1827 |
| TaaI | ACNGT | 1 cut(s) | 545 |
| TaqI | TCGA | 1 cut(s) | 1459 |
| TasI | AATT | 9 cut(s) | 573, 892, 1055, 1423, 1478, 1486, 1654, 1669, 1876 |
| TatI | WGTACW | 1 cut(s) | 1661 |
| TfiI | GAWTC | 5 cut(s) | 470, 593, 853, 1333, 1823 |
| Tru1I | TTAA | 7 cut(s) | 35, 492, 572, 600, 728, 1277, 1470 |
| Tru9I | TTAA | 7 cut(s) | 35, 492, 572, 600, 728, 1277, 1470 |
| TscAI | CASTG | 1 cut(s) | 1147 |
| TseI | GCWGC | 4 cut(s) | 44, 105, 179, 1037 |
| TspRI | CASTG | 1 cut(s) | 1147 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1318 |
| VpaK11BI | GGWCC | 3 cut(s) | 363, 518, 1290 |
| VspI | ATTAAT | 3 cut(s) | 35, 492, 572 |
| XapI | RAATTY | 1 cut(s) | 1478 |
| XceI | RCATGY | 2 cut(s) | 623, 798 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 604 |
| XspI | CTAG | 6 cut(s) | 51, 216, 278, 282, 1619, 1758 |
| ZrmI | AGTACT | 1 cut(s) | 1663 |
| Zsp2I | ATGCAT | 1 cut(s) | 571 |