pycom12g10610

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000421
Physical Location & Seq
Forward (+)
12591228 .. 12591509
282 bp
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UTR
Exon/CDS
Intron
pycom12g10610.1

Sequence Viewer

Length: 282 bp
ATGTGCTTGAATGACTTTGGAGCTATTGATTCTATGAATGATAGATTTCATTTGGAACCAGTGATGTGGTGGATTGTCCATGGAGCTTCTACACCTAGTCTCCAATCCATAGCGTTGAAGCTACTTGGACAACCTTGTTCCTCCTCTTGTTGTGAAAGAAATTGGAGCACTTATAGTTTTATTCACTCTTTAAGAAGGAACAAGATTACACCACAAAGAGCTGAGGATTTGGTATTTGTGCATAATAATCTTCGTCTTTTATCAAGGAATAGCTCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

94

Amino Acids

10.65

Weight (kDa)

8.49

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 15 - 84 5.9e-14 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 10, 118
AluBI AGCT 5 cut(s) 23, 86, 121, 221, 273
AluI AGCT 5 cut(s) 23, 86, 121, 221, 273
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 96, 280
BmiI GGNNCC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 66
CviAII CATG 1 cut(s) 80
CviJI RGCY 5 cut(s) 23, 86, 121, 221, 273
CviKI_1 RGCY 5 cut(s) 23, 86, 121, 221, 273
DdeI CTNAG 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 35, 81, 110, 174, 243
FatI CATG 1 cut(s) 79
FspBI CTAG 2 cut(s) 96, 280
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 1 cut(s) 83
LmnI GCTCC 3 cut(s) 20, 83, 165
LpnPI CCDG 1 cut(s) 72
MaeI CTAG 2 cut(s) 96, 280
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 160
MnlI CCTC 3 cut(s) 151, 154, 217
MseI TTAA 1 cut(s) 191
NcoI CCATGG 1 cut(s) 79
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 191
SduI GDGCHC 1 cut(s) 170
SetI ASST 8 cut(s) 25, 88, 97, 123, 136, 223, 275, 281
SgeI CNNG 9 cut(s) 19, 71, 92, 108, 137, 147, 159, 214, 276
Sse9I AATT 1 cut(s) 160
SspMI CTAG 2 cut(s) 96, 280
StyI CCWWGG 1 cut(s) 79
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 38, 50
TspRI CASTG 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 66
XspI CTAG 2 cut(s) 96, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.