Rmu_sc0022727.1_g000002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022727.1
OG0000421
Physical Location & Seq
Forward (+)
3116 .. 3520
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022727.1_g000002.1.cds

Sequence Viewer

Length: 405 bp
atgaatgcagctcctagacaagttcctctaccattatcaggacagcaagaggggagttccgccaatagcagctatgaaatgagttatcctgcctatacacaagcaccaacaacaagtagtggtggaaaaaagaggaaaacaactactggttatgttgaaaaggccttccaaaactcagcaagggagcaatgggatggtgaggttgcaaggatgttctacaccggtggcttatctttcaatctagctagaaatccacactatcggaactcctacatttgcgcttctacccttccaggctacattccaccaggttacaatgctctgaggaccacacttcttgcaaaagaaaggaaaaatattgagcatcatttgaagccaatcaagcttacatggacagatagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

9.75

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 3 cut(s) 158, 238, 373
AjnI CCWGG 2 cut(s) 292, 307
AluBI AGCT 4 cut(s) 11, 72, 245, 385
AluI AGCT 4 cut(s) 11, 72, 245, 385
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 8, 69
AsiGI ACCGGT 1 cut(s) 221
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 20, 81
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 294, 309
BfaI CTAG 3 cut(s) 15, 242, 246
BisI GCNGC 2 cut(s) 9, 70
BlsI GCNGC 2 cut(s) 10, 71
Bme1390I CCNGG 2 cut(s) 294, 309
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 294, 309
BmsI GCATC 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 294, 309
BseGI GGATG 2 cut(s) 199, 216
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 189, 314
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 20, 81
BshFI GGCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 221
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 38
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 164
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 188, 315
BsrDI GCAATG 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 294, 309
BstDEI CTNAG 2 cut(s) 175, 323
BstF5I GGATG 2 cut(s) 199, 216
BstHHI GCGC 1 cut(s) 281
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNI CCWGG 2 cut(s) 294, 309
BstSCI CCNGG 2 cut(s) 292, 307
BstV1I GCAGC 2 cut(s) 20, 81
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 199, 216
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 327
CsiI ACCWGGT 1 cut(s) 307
CspAI ACCGGT 1 cut(s) 221
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 1 cut(s) 390
CviJI RGCY 8 cut(s) 11, 72, 164, 228, 245, 297, 376, 385
CviKI_1 RGCY 8 cut(s) 11, 72, 164, 228, 245, 297, 376, 385
DdeI CTNAG 2 cut(s) 175, 323
EciI GGCGGA 1 cut(s) 49
Eco147I AGGCCT 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 292, 307
FaeI CATG 1 cut(s) 393
FaiI YATR 4 cut(s) 75, 96, 153, 391
FatI CATG 1 cut(s) 389
Fnu4HI GCNGC 2 cut(s) 9, 70
FokI GGATG 2 cut(s) 206, 223
Fsp4HI GCNGC 2 cut(s) 9, 70
FspBI CTAG 3 cut(s) 15, 242, 246
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 9, 70
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 222
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 393
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 383
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 264, 324
Hpy188III TCNNGA 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 175, 299
HpyCH4V TGCA 3 cut(s) 8, 206, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 175, 323
Hsp92II CATG 1 cut(s) 393
HspAI GCGC 1 cut(s) 279
LmnI GCTCC 2 cut(s) 16, 184
LpnPI CCDG 8 cut(s) 24, 102, 132, 235, 279, 294, 306, 321
Lsp1109I GCAGC 2 cut(s) 20, 81
LweI GCATC 1 cut(s) 373
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 3 cut(s) 15, 242, 246
MaeIII GTNAC 1 cut(s) 311
MnlI CCTC 5 cut(s) 36, 43, 126, 193, 318
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 294, 309
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 294, 309
MwoI GCNNNNNNNGC 1 cut(s) 382
NlaIII CATG 1 cut(s) 393
PceI AGGCCT 1 cut(s) 164
PctI GAATGC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 221
PkrI GCNGC 2 cut(s) 10, 71
Psp6I CCWGG 2 cut(s) 292, 307
PspGI CCWGG 2 cut(s) 292, 307
PspPI GGNCC 1 cut(s) 327
SatI GCNGC 2 cut(s) 9, 70
Sau96I GGNCC 1 cut(s) 327
ScrFI CCNGG 2 cut(s) 294, 309
SetI ASST 6 cut(s) 13, 74, 204, 247, 313, 387
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 373
SgrAI CRCCGGYG 1 cut(s) 221
SinI GGWCC 1 cut(s) 327
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 15, 242, 246
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 292, 307
TseI GCWGC 2 cut(s) 8, 69
TspDTI ATGAA 2 cut(s) 17, 90
VpaK11BI GGWCC 1 cut(s) 327
XspI CTAG 3 cut(s) 15, 242, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.