pycom11g17470

hAT family C-terminal dimerisation region

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
19664772 .. 19665822
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17470.2

Sequence Viewer

Length: 876 bp
ATGCTTAGAAGATTTAAGGAAATAAAGGAAGGTTTACAACAAATGGTGATCAGCCCAAATTGGGGGTTTTACAAAGAAGATGATTTGGTTAAAGCAATGATGGTGAAGCAAAAGATATTGGATGAGGATTTTTGGGAGAAGATTGATTATATTCTTTTCTTTACAACTTCAATATATGAGGAGTGGTGGGATGCTATGATTGAAAAGGTGAAAGCTGCTATATACAGGAATGAGCACAAGGCATTACATGAAAAAAGTAGCTTTTTTGATGCGGTGTATCGCATTTTATTGGAGCGATGGACTAAAAGTAGCACACCACTTCATTGTTTGGCACATTCATTAAATCCAAGTTTAGGTATTATAGTTCGGAATGGCTCCAAGAAGACCCTAGTCGTCTTGCTCCACACCGAGATGTTGAACTTACAATTCAAAGGAAAAAGTACTTTGAGAGGTACTTTTCCAATGGGGAAATTAGAAGAAATATCAATGTGGGGGTATGCCTCGTTCTCTAGGTTTCATTTGGAGCCAGTGATGTGGTGGATTGTCCATGGAGCTTCTACACCTAGTCTCCAATCCATAACGTTGAAGCTACTTGGACAACCTTGTTCCTCCTCTTGTTGCAAAAGAAATTGGAGCACTTATAGTTTTATTCACTCTTTAAGAAAGAACAAGATTACGCCACAAAGAGCCGAGGATTTGGTATTTGTGCATAATAATCTTCGTCTTTTATCAAGGAATAGCTCAACCTACAAAAAGGTATTACTCAATTGTGGGATGTTGGAGGAGATGGCTTTGAAAACCTGGGTGAAGAAAGTGTCGGGATGCTTGAAATGGCTAACCTTTCACTTGATGAACCGTCATTGGAGACTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

292

Amino Acids

34.26

Weight (kDa)

9.61

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclI AACGTT 1 cut(s) 581
AfaI GTAC 2 cut(s) 442, 454
AfiI CCNNNNNNNGG 3 cut(s) 61, 62, 353
AgsI TTSAA 7 cut(s) 171, 203, 418, 430, 586, 796, 829
AjnI CCWGG 1 cut(s) 800
AluBI AGCT 5 cut(s) 215, 261, 554, 589, 741
AluI AGCT 5 cut(s) 215, 261, 554, 589, 741
Alw21I GWGCWC 2 cut(s) 237, 638
Alw26I GTCTC 2 cut(s) 572, 859
ApeKI GCWGC 1 cut(s) 215
AsuHPI GGTGA 4 cut(s) 58, 115, 220, 817
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 2 cut(s) 237, 638
BbvI GCAGC 1 cut(s) 202
BccI CCATC 3 cut(s) 94, 291, 781
BciT130I CCWGG 1 cut(s) 802
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 572, 859
BfaI CTAG 3 cut(s) 389, 510, 564
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 802
BmiI GGNNCC 2 cut(s) 376, 525
BmrFI CCNGG 1 cut(s) 802
BmsI GCATC 3 cut(s) 181, 259, 812
BoxI GACNNNNGTC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 547, 690, 801
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 62, 353
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 802
BseDI CCNNGG 3 cut(s) 547, 690, 801
BseGI GGATG 4 cut(s) 127, 196, 780, 827
BseLI CCNNNNNNNGG 3 cut(s) 61, 62, 353
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 527
BseRI GAGGAG 3 cut(s) 194, 601, 797
BseXI GCAGC 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 237, 638
BslI CCNNNNNNNGG 3 cut(s) 61, 62, 353
BsmAI GTCTC 2 cut(s) 572, 859
Bsp1286I GDGCHC 2 cut(s) 237, 638
Bsp143I GATC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 376, 525
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 3 cut(s) 547, 690, 801
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 802
Bst4CI ACNGT 1 cut(s) 857
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 4 cut(s) 127, 196, 780, 827
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 2 cut(s) 572, 859
BstMBI GATC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 802
BstPAI GACNNNNGTC 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 800
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 534
BtgI CCRYGG 1 cut(s) 547
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 4 cut(s) 127, 196, 780, 827
BtsIMutI CAGTG 1 cut(s) 534
Csp6I GTAC 2 cut(s) 441, 453
CviAII CATG 2 cut(s) 248, 548
CviQI GTAC 2 cut(s) 441, 453
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 2 cut(s) 251, 551
FatI CATG 2 cut(s) 247, 547
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 4 cut(s) 134, 203, 787, 834
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 3 cut(s) 389, 510, 564
GluI GCNGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 251, 551
HphI GGTGA 4 cut(s) 58, 115, 220, 817
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 1 cut(s) 819
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 2 cut(s) 621, 709
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 2 cut(s) 251, 551
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 6 cut(s) 292, 380, 405, 523, 551, 633
LpnPI CCDG 4 cut(s) 211, 540, 787, 814
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 3 cut(s) 181, 259, 812
MaeI CTAG 3 cut(s) 389, 510, 564
MaeII ACGT 1 cut(s) 581
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 7 cut(s) 21, 89, 151, 394, 488, 710, 820
MfeI CAATTG 1 cut(s) 766
MhlI GDGCHC 2 cut(s) 237, 638
MluCI AATT 5 cut(s) 58, 425, 470, 628, 766
MmeI TCCRAC 1 cut(s) 759
MnlI CCTC 8 cut(s) 118, 172, 443, 511, 619, 622, 685, 775
MseI TTAA 4 cut(s) 15, 90, 341, 659
MslI CAYNNNNRTG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 802
MunI CAATTG 1 cut(s) 766
MvaI CCWGG 1 cut(s) 802
NcoI CCATGG 1 cut(s) 547
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 251, 551
NlaIV GGNNCC 2 cut(s) 376, 525
NmeAIII GCCGAG 1 cut(s) 715
PkrI GCNGC 1 cut(s) 217
PshAI GACNNNNGTC 1 cut(s) 389
Psp1406I AACGTT 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 800
PspGI CCWGG 1 cut(s) 800
PspN4I GGNNCC 2 cut(s) 376, 525
PsrI GAACNNNNNNTAC 2 cut(s) 488, 520
RsaI GTAC 2 cut(s) 442, 454
RsaNI GTAC 2 cut(s) 441, 453
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 4 cut(s) 15, 90, 341, 659
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 2 cut(s) 237, 638
SfaNI GCATC 3 cut(s) 181, 259, 812
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 5 cut(s) 58, 425, 470, 628, 766
SsiI CCGC 1 cut(s) 272
SspMI CTAG 3 cut(s) 389, 510, 564
StyD4I CCNGG 1 cut(s) 800
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 1 cut(s) 584
TasI AATT 5 cut(s) 58, 425, 470, 628, 766
TatI WGTACW 1 cut(s) 440
Tru1I TTAA 4 cut(s) 15, 90, 341, 659
Tru9I TTAA 4 cut(s) 15, 90, 341, 659
TscAI CASTG 1 cut(s) 534
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 5 cut(s) 264, 311, 327, 506, 866
TspRI CASTG 1 cut(s) 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XspI CTAG 3 cut(s) 389, 510, 564
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.