FvH4_6g10272

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000421
Physical Location & Seq
Forward (+)
6116948 .. 6120211
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10272.t1

Sequence Viewer

Length: 909 bp
ATGGAAATCCGCACCAAAACTTTGGTGCGGACGTCCGCACCTGAGAATTCATGCGGAGCTAAGGATACCAAATCTAGGGTTTTGTGTAAGGCGGCAGTGAGAACCGATTGCGGGCTCTCTCGACGGCACCTCATCTCTCCAGGTGAGGCGTTCAGTGGTGGTGATTTGTTGCTGAGCGCGAAGATTCCTCAGTTCTTTGCACGACGAGCGTGGGTGGGTGACGCGAGTTTGACATCGACGACAAATCGAGGATCGACGGGCGGCACAACAAGGCTAAGGAATCATGACAGCAAGGCACGAGGGACTGCCGGACTGATTTGGTGGCGTGGCGGCTCCGGTGGTTCTAGGTATTATAGTCTGGAATGGGTTGCAGAAGATAGTACCCGAAAGGCTCCTCATCAAGATATTGATATTACTAGAGAAAGAAAAAATTGCATTTTAAAGTATTATGATGATGCAGATCAACGGAGAGACGTTAATGTAGAGTACTCCAATTTTTATATGGATGATTTTTGTAATGTTGATGCAATACATGATAGATCCATCCTACACCTTTTGAAATGGTGGGCAGTTCATGGAGCTTCAGCAACCATCTTCATCCTTATGTTGCGAAACGAATTAGAGTACTTACAAGTTCATACATTCCGCAACAAGAAACAAGATTACTCTAAAGAGTGGAAGATTTGGTATTTGTACATACCAATCTTCGCCTTTTATCTAGAAAGTAGCGACTCTTACAAAGAATGTCCGACTCAAATGTGGGATGTTGGAGGTGATCAATTTGATTCATTGGATGAAACTAATCTTGAGAGGCTCGAGTTTGAGGATCTTTCTCTTGATGAACCATCGTTGGAGGCTGTTTTGTTTGATAATGTTCATGAGAATGAGGATTATGTCCTTGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

303

Amino Acids

34.77

Weight (kDa)

5.46

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 126
AccII CGCG 2 cut(s) 179, 224
AciI CCGC 9 cut(s) 10, 28, 36, 54, 92, 111, 261, 330, 646
AclWI GGATC 3 cut(s) 259, 534, 834
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 4 cut(s) 382, 488, 626, 695
AfiI CCNNNNNNNGG 2 cut(s) 75, 111
AgsI TTSAA 1 cut(s) 559
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 59, 581
AluI AGCT 2 cut(s) 59, 581
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 3 cut(s) 259, 534, 834
Ama87I CYCGRG 1 cut(s) 815
ApoI RAATTY 1 cut(s) 46
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 155, 173, 230, 785
AvaI CYCGRG 1 cut(s) 815
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 1 cut(s) 297
BccI CCATC 3 cut(s) 551, 599, 853
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 4 cut(s) 75, 345, 417, 719
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 3 cut(s) 93, 262, 331
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 3 cut(s) 94, 263, 332
BmcAI AGTACT 2 cut(s) 488, 626
Bme1390I CCNGG 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 815
BmiI GGNNCC 3 cut(s) 128, 334, 393
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 445, 514
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 60, 275
Bpu1102I GCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 827
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 111
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 5 cut(s) 511, 543, 597, 769, 799
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 75, 111
BseMII CTCAG 3 cut(s) 33, 164, 203
BseRI GAGGAG 1 cut(s) 384
Bsh1236I CGCG 2 cut(s) 179, 224
BshNI GGYRCC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 815
BsiSI CCGG 2 cut(s) 309, 336
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 75, 111
BsmAI GTCTC 1 cut(s) 465
BsmBI CGTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 5 cut(s) 251, 460, 539, 775, 826
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 9 cut(s) 10, 28, 36, 54, 92, 111, 261, 330, 646
BspCNI CTCAG 3 cut(s) 34, 165, 202
BspFNI CGCG 2 cut(s) 179, 224
BspHI TCATGA 2 cut(s) 283, 877
BspLI GGNNCC 3 cut(s) 128, 334, 393
BspPI GGATC 3 cut(s) 259, 534, 834
BspT107I GGYRCC 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 693
BssMI GATC 5 cut(s) 251, 460, 539, 775, 826
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 5 cut(s) 42, 60, 173, 189, 275
BstF5I GGATG 5 cut(s) 511, 543, 597, 769, 799
BstFNI CGCG 2 cut(s) 179, 224
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 5 cut(s) 254, 463, 542, 778, 829
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 5 cut(s) 251, 460, 539, 775, 826
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstUI CGCG 2 cut(s) 179, 224
BstX2I RGATCY 2 cut(s) 539, 826
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 2 cut(s) 539, 826
BsuI GTATCC 1 cut(s) 58
BtsCI GGATG 5 cut(s) 511, 543, 597, 769, 799
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 160
Cac8I GCNNGC 1 cut(s) 113
CciI TCATGA 2 cut(s) 283, 877
CfoI GCGC 1 cut(s) 179
CseI GACGC 1 cut(s) 230
Csp6I GTAC 4 cut(s) 381, 487, 625, 694
CviAII CATG 5 cut(s) 51, 284, 533, 575, 878
CviJI RGCY 8 cut(s) 59, 115, 274, 333, 392, 581, 814, 857
CviKI_1 RGCY 8 cut(s) 59, 115, 274, 333, 392, 581, 814, 857
CviQI GTAC 4 cut(s) 381, 487, 625, 694
DdeI CTNAG 5 cut(s) 42, 60, 173, 189, 275
DpnI GATC 5 cut(s) 253, 462, 541, 777, 828
DpnII GATC 5 cut(s) 251, 460, 539, 775, 826
DraI TTTAAA 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 465
FaeI CATG 5 cut(s) 54, 287, 536, 578, 881
FaqI GGGAC 1 cut(s) 316
FatI CATG 5 cut(s) 50, 283, 532, 574, 877
FauI CCCGC 1 cut(s) 104
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 93, 262, 331
FokI GGATG 5 cut(s) 518, 530, 584, 776, 806
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 3 cut(s) 93, 262, 331
FspBI CTAG 4 cut(s) 75, 345, 417, 719
GlaI GCGC 1 cut(s) 178
GluI GCNGC 3 cut(s) 93, 262, 331
GsuI CTGGAG 1 cut(s) 123
HapII CCGG 2 cut(s) 309, 336
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 5 cut(s) 54, 287, 536, 578, 881
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 5 cut(s) 184, 280, 731, 751, 785
HpaII CCGG 2 cut(s) 309, 336
HphI GGTGA 4 cut(s) 155, 173, 230, 785
Hpy188I TCNGA 1 cut(s) 750
Hpy188III TCNNGA 8 cut(s) 120, 284, 359, 401, 719, 806, 836, 878
Hpy99I CGWCG 4 cut(s) 126, 207, 241, 259
HpyCH4IV ACGT 2 cut(s) 32, 474
HpyCH4V TGCA 5 cut(s) 200, 371, 435, 458, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 5 cut(s) 42, 60, 173, 189, 275
HpySE526I ACGT 2 cut(s) 32, 474
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 5 cut(s) 54, 287, 536, 578, 881
HspAI GCGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 5 cut(s) 251, 460, 539, 775, 826
LmnI GCTCC 4 cut(s) 56, 338, 397, 578
LpnPI CCDG 6 cut(s) 54, 126, 153, 322, 344, 349
LweI GCATC 2 cut(s) 445, 514
MaeI CTAG 4 cut(s) 75, 345, 417, 719
MaeII ACGT 2 cut(s) 32, 474
MaeIII GTNAC 1 cut(s) 218
MalI GATC 5 cut(s) 253, 462, 541, 777, 828
MboI GATC 5 cut(s) 251, 460, 539, 775, 826
MboII GAAGA 5 cut(s) 193, 386, 586, 691, 697
MflI RGATCY 2 cut(s) 539, 826
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 5 cut(s) 46, 430, 493, 617, 779
MlyI GAGTC 2 cut(s) 725, 745
MmeI TCCRAC 3 cut(s) 748, 773, 831
MseI TTAA 3 cut(s) 440, 477, 907
MslI CAYNNNNRTG 2 cut(s) 602, 882
MspI CCGG 2 cut(s) 309, 336
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 2 cut(s) 179, 224
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 5 cut(s) 251, 460, 539, 775, 826
NlaIII CATG 5 cut(s) 54, 287, 536, 578, 881
NlaIV GGNNCC 3 cut(s) 128, 334, 393
NmuCI GTSAC 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 815
PagI TCATGA 2 cut(s) 283, 877
PfeI GAWTC 3 cut(s) 184, 280, 785
PkrI GCNGC 3 cut(s) 94, 263, 332
PleI GAGTC 2 cut(s) 725, 745
PpsI GAGTC 2 cut(s) 725, 745
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 128, 334, 393
PspXI VCTCGAGB 1 cut(s) 815
PsuI RGATCY 2 cut(s) 539, 826
RsaI GTAC 4 cut(s) 382, 488, 626, 695
RsaNI GTAC 4 cut(s) 381, 487, 625, 694
RseI CAYNNNNRTG 2 cut(s) 602, 882
SaqAI TTAA 3 cut(s) 440, 477, 907
SatI GCNGC 3 cut(s) 93, 262, 331
Sau3AI GATC 5 cut(s) 251, 460, 539, 775, 826
ScaI AGTACT 2 cut(s) 488, 626
SchI GAGTC 2 cut(s) 725, 745
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 2 cut(s) 445, 514
Sfr274I CTCGAG 1 cut(s) 815
SlaI CTCGAG 1 cut(s) 815
SmiMI CAYNNNNRTG 2 cut(s) 602, 882
SmlI CTYRAG 2 cut(s) 806, 815
SmoI CTYRAG 2 cut(s) 806, 815
Sse9I AATT 5 cut(s) 46, 430, 493, 617, 779
SsiI CCGC 9 cut(s) 10, 28, 36, 54, 92, 111, 261, 330, 646
SspMI CTAG 4 cut(s) 75, 345, 417, 719
StyD4I CCNGG 1 cut(s) 139
TaiI ACGT 2 cut(s) 35, 477
TaqI TCGA 5 cut(s) 121, 236, 247, 254, 816
TasI AATT 5 cut(s) 46, 430, 493, 617, 779
TatI WGTACW 3 cut(s) 486, 624, 693
TauI GCSGC 3 cut(s) 95, 264, 333
TfiI GAWTC 3 cut(s) 184, 280, 785
Tru1I TTAA 3 cut(s) 440, 477, 907
Tru9I TTAA 3 cut(s) 440, 477, 907
TscAI CASTG 2 cut(s) 102, 160
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 8 cut(s) 39, 563, 586, 626, 777, 810, 855, 866
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 2 cut(s) 102, 160
XapI RAATTY 1 cut(s) 46
XbaI TCTAGA 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 815
XspI CTAG 4 cut(s) 75, 345, 417, 719
ZraI GACGTC 1 cut(s) 33
ZrmI AGTACT 2 cut(s) 488, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.