Rh7DG407100

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000421
Physical Location & Seq
Reverse (-)
57024573 .. 57027383
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG407100.1

Sequence Viewer

Length: 291 bp
ATGGGAACCATGAGTGATGGAGGAACACCTCCTATTAGTTCTAGTGCCGGGTCTGTTAATGCCGGTATTAGTAGTGGAGCTGGTGATGCTGAAAATGAGATCATAGATGATAAAGCACCGTTGTGGAAATTTGTGAAGAAGATTCAAAAACGGCAAGGTGGAGGAGGTTGGAAGTGGCAGTGCAATTTCTGCAAATTGTACTACAGCGGCTCTTATACTAGAGTTCGTAGTCATTTATTGAAAGAAGGAACAGCGGGGGTGGCAATTTGCACCAAGATCGATAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

96

Amino Acids

10.2

Weight (kDa)

9.1

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 207, 254
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 2 cut(s) 146, 241
AleI CACNNNNGTG 1 cut(s) 121
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
ApoI RAATTY 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 95
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 1 cut(s) 259
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 2 cut(s) 42, 219
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 279
Bse118I RCCGGY 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 279
BsiSI CCGG 2 cut(s) 48, 63
Bsp143I GATC 2 cut(s) 99, 276
BspACI CCGC 2 cut(s) 207, 254
BspDI ATCGAT 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 2 cut(s) 99, 276
Bst4CI ACNGT 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 102, 279
BstMBI GATC 2 cut(s) 99, 276
BstMWI GCNNNNNNNGC 3 cut(s) 86, 189, 260
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 10
CviJI RGCY 2 cut(s) 80, 210
CviKI_1 RGCY 2 cut(s) 80, 210
CviQI GTAC 1 cut(s) 199
DpnI GATC 2 cut(s) 101, 278
DpnII GATC 2 cut(s) 99, 276
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 104, 216
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 2 cut(s) 42, 219
GluI GCNGC 1 cut(s) 208
HapII CCGG 2 cut(s) 48, 63
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 48, 63
HphI GGTGA 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 183, 192, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 189, 260
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 2 cut(s) 99, 276
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 3 cut(s) 61, 66, 76
LweI GCATC 1 cut(s) 76
MaeI CTAG 2 cut(s) 42, 219
MalI GATC 2 cut(s) 101, 278
MboI GATC 2 cut(s) 99, 276
MboII GAAGA 2 cut(s) 148, 151
MluCI AATT 4 cut(s) 128, 184, 194, 264
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 14, 39, 155, 158
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 121
MspA1I CMGCKG 2 cut(s) 207, 254
MspI CCGG 2 cut(s) 48, 63
MspR9I CCNGG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 86, 189, 260
NciI CCSGG 1 cut(s) 49
NdeII GATC 2 cut(s) 99, 276
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 7
OliI CACNNNNGTG 1 cut(s) 121
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 99, 276
ScrFI CCNGG 1 cut(s) 49
SetI ASST 4 cut(s) 31, 82, 160, 169
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 4 cut(s) 128, 184, 194, 264
SsiI CCGC 2 cut(s) 207, 254
SspMI CTAG 2 cut(s) 42, 219
StyD4I CCNGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 279
TasI AATT 4 cut(s) 128, 184, 194, 264
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 185
TspRI CASTG 1 cut(s) 185
XapI RAATTY 1 cut(s) 128
XspI CTAG 2 cut(s) 42, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.