Rmu_sc0002329.1_g000029

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002329.1
OG0000421
Physical Location & Seq
Reverse (-)
131801 .. 133913
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002329.1_g000029.1.cds

Sequence Viewer

Length: 867 bp
atggtgtttggaaaaggaaaaccatcccatcaagaaccaatttttgaagaaaattatgaaggtgatgtcgatgagcatgaagacaataatactattgaagaaactcaagcaagtaatacagaccaatcatcgagtagaaacaaccatgaacaagctcaagaatctcaagaaattccaatgaattctgacattaagccattactcaatgaagttattatcacacgtggagcgcaaggaaaaaattcgggtggaacaaaatcatggacctgcaaacattgtgatggtcagtataagagttcatacactcgcattcactaccacttttttgacaaaaatcgtgttgatatgaaggtgatgagaggattgagcgctaatggaattccgtttaatgtgttaagaaatcgccaatttcatgagatgatttcagctataaataatggacccaagggttataaggctccatcttctgaaaaagcaagaactactttgcttgatgagtatggatggtctaacatgaagcttgagccacttatcaacattattgctgcaaatagtagaggagcgttgcttctttacgctcaagatttttctgggatacaaaaaactagtgaagtgattgctgcctttatgcttactgcaattgaagatgtggaatcgtcaaatgtcctccagatagtcactgacaatgcaaaaaactgtgaatctgctgggagagagattgaaaaggttgtcttctctgcttccctcacacccagaaagctcaagcttcaccagcctggtacactcctgacccaaaatcgtcaacgaaacaagcaaccggcaccaaaacccaccatgattcagcaaaatcctctccttgaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

288

Amino Acids

32.34

Weight (kDa)

6.27

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 820
AcsI RAATTY 4 cut(s) 171, 181, 241, 378
AcvI CACGTG 1 cut(s) 224
AfaI GTAC 1 cut(s) 781
AfeI AGCGCT 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 5 cut(s) 47, 98, 644, 722, 860
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 1 cut(s) 775
AluBI AGCT 5 cut(s) 155, 428, 520, 760, 766
AluI AGCT 5 cut(s) 155, 428, 520, 760, 766
Aor51HI AGCGCT 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 545, 620
ApoI RAATTY 4 cut(s) 171, 181, 241, 378
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 2 cut(s) 232, 371
AspS9I GGNCC 2 cut(s) 264, 440
AsuHPI GGTGA 3 cut(s) 74, 364, 761
AvaII GGWCC 2 cut(s) 264, 440
BanI GGYRCC 1 cut(s) 820
BbrPI CACGTG 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 87, 724
BbvI GCAGC 2 cut(s) 532, 607
BccI CCATC 5 cut(s) 31, 36, 275, 469, 498
BciT130I CCWGG 1 cut(s) 777
BciVI GTATCC 1 cut(s) 588
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 275
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 2 cut(s) 546, 621
BlsI GCNGC 2 cut(s) 547, 622
Bme1390I CCNGG 1 cut(s) 777
Bme18I GGWCC 2 cut(s) 264, 440
BmgT120I GGNCC 2 cut(s) 264, 440
BmiI GGNNCC 3 cut(s) 442, 459, 822
BmrFI CCNGG 1 cut(s) 777
BpiI GAAGAC 2 cut(s) 87, 724
BpmI CTGGAG 1 cut(s) 653
BpuEI CTTGAG 6 cut(s) 90, 141, 150, 542, 564, 746
BsaAI YACGTR 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 444
Bse118I RCCGGY 1 cut(s) 817
BseBI CCWGG 1 cut(s) 777
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 23, 509
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 2 cut(s) 532, 607
BseYI CCCAGC 1 cut(s) 707
BshNI GGYRCC 1 cut(s) 820
BsiSI CCGG 1 cut(s) 818
BsmI GAATGC 1 cut(s) 309
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 442, 459, 822
BspMI ACCTGC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 820
BsrFI RCCGGY 1 cut(s) 817
BssAI RCCGGY 1 cut(s) 817
BssECI CCNNGG 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 224
BstF5I GGATG 2 cut(s) 23, 509
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 2 cut(s) 232, 371
BstMWI GCNNNNNNNGC 1 cut(s) 772
BstNI CCWGG 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 775
BstV1I GCAGC 2 cut(s) 532, 607
BstV2I GAAGAC 2 cut(s) 87, 724
BsuI GTATCC 1 cut(s) 588
BtsCI GGATG 2 cut(s) 23, 509
BtsIMutI CAGTG 1 cut(s) 678
BveI ACCTGC 1 cut(s) 275
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 232, 371
Cfr10I RCCGGY 1 cut(s) 817
Cfr13I GGNCC 2 cut(s) 264, 440
Csp6I GTAC 1 cut(s) 780
CviAII CATG 6 cut(s) 77, 146, 261, 413, 514, 835
CviJI RGCY 9 cut(s) 155, 196, 428, 458, 520, 526, 760, 766, 775
CviKI_1 RGCY 9 cut(s) 155, 196, 428, 458, 520, 526, 760, 766, 775
CviQI GTAC 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 264, 440
Eco47III AGCGCT 1 cut(s) 370
Eco72I CACGTG 1 cut(s) 224
EcoRI GAATTC 2 cut(s) 181, 378
EcoRII CCWGG 1 cut(s) 775
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 6 cut(s) 80, 149, 264, 416, 517, 838
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 716, 748
FatI CATG 6 cut(s) 76, 145, 260, 412, 513, 834
Fnu4HI GCNGC 2 cut(s) 546, 621
FokI GGATG 2 cut(s) 10, 516
Fsp4HI GCNGC 2 cut(s) 546, 621
FspBI CTAG 1 cut(s) 606
GlaI GCGC 2 cut(s) 231, 370
GluI GCNGC 2 cut(s) 546, 621
GsaI CCCAGC 1 cut(s) 711
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 1 cut(s) 372
HapII CCGG 1 cut(s) 818
HhaI GCGC 2 cut(s) 232, 371
Hin1II CATG 6 cut(s) 80, 149, 264, 416, 517, 838
Hin6I GCGC 2 cut(s) 230, 369
HinP1I GCGC 2 cut(s) 230, 369
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HindIII AAGCTT 2 cut(s) 518, 764
HinfI GANTC 4 cut(s) 161, 653, 701, 838
HpaII CCGG 1 cut(s) 818
HphI GGTGA 3 cut(s) 74, 364, 761
Hpy166II GTNNAC 2 cut(s) 782, 803
Hpy188I TCNGA 2 cut(s) 187, 469
Hpy188III TCNNGA 7 cut(s) 32, 158, 167, 413, 581, 670, 787
Hpy8I GTNNAC 2 cut(s) 782, 803
HpyAV CCTTC 2 cut(s) 53, 343
HpyCH4III ACNGT 1 cut(s) 698
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 270, 548, 638, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 772
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 6 cut(s) 80, 149, 264, 416, 517, 838
HspAI GCGC 2 cut(s) 230, 369
LmnI GCTCC 3 cut(s) 227, 463, 560
Lsp1109I GCAGC 2 cut(s) 532, 607
MaeI CTAG 1 cut(s) 606
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 676
MboII GAAGA 6 cut(s) 59, 92, 110, 456, 656, 724
MfeI CAATTG 1 cut(s) 639
MluCI AATT 8 cut(s) 39, 52, 171, 181, 241, 378, 407, 639
MnlI CCTC 5 cut(s) 353, 551, 677, 755, 861
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 3 cut(s) 192, 387, 395
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 818
MspR9I CCNGG 1 cut(s) 777
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 777
MwoI GCNNNNNNNGC 1 cut(s) 772
NlaIII CATG 6 cut(s) 80, 149, 264, 416, 517, 838
NlaIV GGNNCC 3 cut(s) 442, 459, 822
NmuCI GTSAC 1 cut(s) 676
PagI TCATGA 1 cut(s) 412
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 4 cut(s) 161, 653, 701, 838
PkrI GCNGC 2 cut(s) 547, 622
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 775
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 3 cut(s) 442, 459, 822
PspPI GGNCC 2 cut(s) 264, 440
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 3 cut(s) 192, 387, 395
SatI GCNGC 2 cut(s) 546, 621
Sau96I GGNCC 2 cut(s) 264, 440
ScrFI CCNGG 1 cut(s) 777
SinI GGWCC 2 cut(s) 264, 440
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 6 cut(s) 105, 156, 165, 521, 579, 761
SmoI CTYRAG 6 cut(s) 105, 156, 165, 521, 579, 761
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 8 cut(s) 39, 52, 171, 181, 241, 378, 407, 639
SspMI CTAG 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 775
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 698
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 69, 131
TasI AATT 8 cut(s) 39, 52, 171, 181, 241, 378, 407, 639
TfiI GAWTC 4 cut(s) 161, 653, 701, 838
Tru1I TTAA 3 cut(s) 192, 387, 395
Tru9I TTAA 3 cut(s) 192, 387, 395
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 2 cut(s) 545, 620
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 9 cut(s) 72, 93, 162, 194, 222, 288, 362, 401, 530
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 264, 440
XapI RAATTY 4 cut(s) 171, 181, 241, 378
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.