Rmu_sc0002655.1_g000006

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002655.1
OG0000421
Physical Location & Seq
Forward (+)
12795 .. 14126
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002655.1_g000006.1.cds

Sequence Viewer

Length: 750 bp
atgcgacaacgacgcgacctcagactcaaacgagaccctcgatcatttttcttctgctcgaacaagacccagttccggtcgttcctcttctccagtccggtcgttcctcttctccagttcagtcgttcctcttctgctcggacgagacccagttccggtcgatcctcttctccagtccggtcgctcctcttctccaaaaccatgagcaccggaggaacgcctcctattagttctagtgccgggtctgttaacaccggtgctagtagcggatctgctgatcctgaaaatgagaccattgatgataaagcaccattgtggaaatttgtgaagaagattgaaaaaatggcaggtggaggaagttggaggtggcgatactttgccaataaagatgatagaaggaaagttaacatagaatttgccaatttttctatgtgcatgcaagagtttggaagtagagatgctatgaaggataggtttattatgcaacctataacatggtgggctatccatggagcttcggcaccatctctccaagccatagccttcaaaggttctagaagcccaacttacaatgagagtgcaactcaaatgtgggatgttggaggtgatgactttgattctttggaagagactaatgttggaaggcttgagattgctaacctttcacttgatgaaccacaattagaggggggtttgtttaatgttaatcatgaagatgaagaccttgaggaagttgtccaagttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

249

Amino Acids

27.93

Weight (kDa)

6.77

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 520
AccII CGCG 1 cut(s) 15
AciI CCGC 1 cut(s) 267
AclWI GGATC 3 cut(s) 156, 272, 277
AcsI RAATTY 2 cut(s) 320, 413
AfiI CCNNNNNNNGG 2 cut(s) 75, 155
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 338, 547, 746
AleI CACNNNNGTG 1 cut(s) 313
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 27, 139, 284, 623
AlwI GGATC 3 cut(s) 156, 272, 277
ApoI RAATTY 2 cut(s) 320, 413
AsiGI ACCGGT 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 617
BanI GGYRCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 1 cut(s) 532
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 4 cut(s) 27, 139, 284, 623
BfaI CTAG 3 cut(s) 234, 261, 555
BfuAI ACCTGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 241
BmrI ACTGGG 2 cut(s) 64, 144
BmsI GCATC 1 cut(s) 448
BmuI ACTGGG 2 cut(s) 64, 144
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 568, 600
BpmI CTGGAG 3 cut(s) 76, 98, 156
BpuEI CTTGAG 2 cut(s) 668, 746
BpuMI CCSGG 1 cut(s) 241
BsaI GGTCTC 3 cut(s) 27, 139, 284
BsaJI CCNNGG 1 cut(s) 508
BsaWI WCCGGW 6 cut(s) 75, 97, 155, 177, 209, 254
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 155
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 5 cut(s) 70, 93, 115, 150, 173
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 75, 155
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 5 cut(s) 70, 93, 115, 150, 173
BseRI GAGGAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 4 cut(s) 80, 102, 160, 182
BshNI GGYRCC 1 cut(s) 520
BshTI ACCGGT 1 cut(s) 254
BsiEI CGRYCG 4 cut(s) 80, 102, 160, 182
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 7 cut(s) 76, 98, 156, 178, 210, 240, 255
BslI CCNNNNNNNGG 2 cut(s) 75, 155
BsmAI GTCTC 4 cut(s) 27, 139, 284, 623
Bso31I GGTCTC 3 cut(s) 27, 139, 284
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 41, 161, 269, 277
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 33
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 522
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 3 cut(s) 156, 272, 277
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 3 cut(s) 27, 139, 284
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 5 cut(s) 70, 93, 115, 150, 173
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 4 cut(s) 41, 161, 269, 277
BssT1I CCWWGG 1 cut(s) 508
Bst6I CTCTTC 6 cut(s) 92, 114, 136, 172, 194, 621
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 4 cut(s) 44, 164, 272, 280
BstMAI GTCTC 4 cut(s) 27, 139, 284, 623
BstMBI GATC 4 cut(s) 41, 161, 269, 277
BstMCI CGRYCG 4 cut(s) 80, 102, 160, 182
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 239
BstUI CGCG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 601
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 437
CciI TCATGA 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 254
CseI GACGC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 254
CviAII CATG 5 cut(s) 202, 436, 495, 509, 710
CviJI RGCY 6 cut(s) 503, 515, 536, 542, 561, 646
CviKI_1 RGCY 6 cut(s) 503, 515, 536, 542, 561, 646
DdeI CTNAG 1 cut(s) 20
DpnI GATC 4 cut(s) 43, 163, 271, 279
DpnII GATC 4 cut(s) 41, 161, 269, 277
Eam1104I CTCTTC 6 cut(s) 92, 114, 136, 172, 194, 621
EarI CTCTTC 6 cut(s) 92, 114, 136, 172, 194, 621
Eco130I CCWWGG 1 cut(s) 508
Eco31I GGTCTC 3 cut(s) 27, 139, 284
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 5 cut(s) 205, 439, 498, 512, 713
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FatI CATG 5 cut(s) 201, 435, 494, 508, 709
FokI GGATG 1 cut(s) 608
FspBI CTAG 3 cut(s) 234, 261, 555
GsuI CTGGAG 3 cut(s) 76, 98, 156
HapII CCGG 7 cut(s) 76, 98, 156, 178, 210, 240, 255
HgaI GACGC 1 cut(s) 21
Hin1II CATG 5 cut(s) 205, 439, 498, 512, 713
HincII GTYRAC 2 cut(s) 250, 406
HindII GTYRAC 2 cut(s) 250, 406
HinfI GANTC 2 cut(s) 24, 617
HpaI GTTAAC 2 cut(s) 250, 406
HpaII CCGG 7 cut(s) 76, 98, 156, 178, 210, 240, 255
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 2 cut(s) 250, 406
Hpy188I TCNGA 2 cut(s) 23, 141
Hpy188III TCNNGA 3 cut(s) 281, 555, 710
Hpy8I GTNNAC 2 cut(s) 250, 406
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 4 cut(s) 390, 460, 553, 636
HpyCH4V TGCA 4 cut(s) 435, 439, 484, 581
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 5 cut(s) 205, 439, 498, 512, 713
KspAI GTTAAC 2 cut(s) 250, 406
Kzo9I GATC 4 cut(s) 41, 161, 269, 277
LmnI GCTCC 2 cut(s) 189, 512
LweI GCATC 1 cut(s) 448
MaeI CTAG 3 cut(s) 234, 261, 555
MalI GATC 4 cut(s) 43, 163, 271, 279
MboI GATC 4 cut(s) 41, 161, 269, 277
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 4 cut(s) 320, 413, 421, 680
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 3 cut(s) 341, 580, 619
MseI TTAA 4 cut(s) 249, 405, 699, 705
MslI CAYNNNNRTG 2 cut(s) 313, 714
MspI CCGG 7 cut(s) 76, 98, 156, 178, 210, 240, 255
MspR9I CCNGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 15
NciI CCSGG 1 cut(s) 241
NcoI CCATGG 1 cut(s) 508
NdeII GATC 4 cut(s) 41, 161, 269, 277
NlaIII CATG 5 cut(s) 205, 439, 498, 512, 713
NlaIV GGNNCC 1 cut(s) 522
NspI RCATGY 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 313
PaeI GCATGC 1 cut(s) 439
PagI TCATGA 1 cut(s) 709
PaqCI CACCTGC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PfeI GAWTC 1 cut(s) 617
PinAI ACCGGT 1 cut(s) 254
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 522
PsuI RGATCY 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 313, 714
SaqAI TTAA 4 cut(s) 249, 405, 699, 705
Sau3AI GATC 4 cut(s) 41, 161, 269, 277
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 448
SgrAI CRCCGGYG 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 313, 714
SmlI CTYRAG 2 cut(s) 647, 725
SmoI CTYRAG 2 cut(s) 647, 725
SphI GCATGC 1 cut(s) 439
Sse9I AATT 4 cut(s) 320, 413, 421, 680
SsiI CCGC 1 cut(s) 267
SspMI CTAG 3 cut(s) 234, 261, 555
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 508
TaqI TCGA 3 cut(s) 40, 59, 160
TasI AATT 4 cut(s) 320, 413, 421, 680
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 4 cut(s) 249, 405, 699, 705
Tru9I TTAA 4 cut(s) 249, 405, 699, 705
TspDTI ATGAA 4 cut(s) 479, 687, 726, 732
XapI RAATTY 2 cut(s) 320, 413
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 1 cut(s) 439
XspI CTAG 3 cut(s) 234, 261, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.