Rmu_sc0000493.1_g000033

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000493.1
OG0000421
Physical Location & Seq
Forward (+)
174779 .. 175279
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000493.1_g000033.1.cds

Sequence Viewer

Length: 501 bp
atgagttatggtgcctatacacaagcacaaacagcaagtgatggtggaaagaagaggaaaacagctgttagttcagttgaaaaggccttccaaaactcagctagggagcgatgcgatagtgaggttgcaaggatgtactacaccggtggcttatctttcaacctagctagaaatccacactatcggaactcctacattcgtgcttctacccttccaggctacattccaccaggctacaatgctctaaggaccacacttcttgcaaaagaaaggaaaaatattgagcgtcatttagagccaatcaagattacatggaaagacaaaggtgtgagtctttgtagtgatggttggtctgatgcacaaagaagaccattgattaatgtgatagccacttgtgagagtggtccgatgatgttgagggctataaactgtgagggggaattcaaggatcatgcattgattgcagacttgattatagattccatcaaggaagtgggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

166

Amino Acids

18.5

Weight (kDa)

9.19

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 3 cut(s) 80, 160, 445
AjnI CCWGG 2 cut(s) 214, 229
AluBI AGCT 3 cut(s) 65, 101, 167
AluI AGCT 3 cut(s) 65, 101, 167
AlwI GGATC 1 cut(s) 456
AoxI GGCC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 440
AseI ATTAAT 1 cut(s) 378
AsiGI ACCGGT 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 249, 404
AvaII GGWCC 2 cut(s) 249, 404
BanI GGYRCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 373
BccI CCATC 3 cut(s) 35, 338, 491
BciT130I CCWGG 2 cut(s) 216, 231
BfaI CTAG 3 cut(s) 102, 164, 168
Bme1390I CCNGG 2 cut(s) 216, 231
Bme18I GGWCC 2 cut(s) 249, 404
BmgT120I GGNCC 2 cut(s) 249, 404
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 216, 231
BmsI GCATC 2 cut(s) 101, 346
BpiI GAAGAC 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 143
BseBI CCWGG 2 cut(s) 216, 231
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 143
BsiSI CCGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 448
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 216, 231
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 461
BstDEI CTNAG 2 cut(s) 97, 245
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 32, 461
BstNI CCWGG 2 cut(s) 216, 231
BstSCI CCNGG 2 cut(s) 214, 229
BstV2I GAAGAC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 249, 404
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 143
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 2 cut(s) 312, 452
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 97, 245
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 249, 404
EcoRI GAATTC 1 cut(s) 440
EcoRII CCWGG 2 cut(s) 214, 229
EcoT22I ATGCAT 1 cut(s) 457
FaeI CATG 2 cut(s) 315, 455
FaiI YATR 6 cut(s) 9, 18, 313, 425, 453, 476
FatI CATG 2 cut(s) 311, 451
FokI GGATG 1 cut(s) 145
FspBI CTAG 3 cut(s) 102, 164, 168
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 275
Hin1II CATG 2 cut(s) 315, 455
HinfI GANTC 2 cut(s) 331, 479
HpaII CCGG 1 cut(s) 144
Hpy188I TCNGA 3 cut(s) 186, 355, 408
Hpy188III TCNNGA 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 97, 221
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 5 cut(s) 128, 263, 359, 455, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 461
HpyF3I CTNAG 2 cut(s) 97, 245
Hsp92II CATG 2 cut(s) 315, 455
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 157, 201, 216, 228, 243
LweI GCATC 2 cut(s) 101, 346
MaeI CTAG 3 cut(s) 102, 164, 168
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 2 cut(s) 64, 378
MluCI AATT 1 cut(s) 440
MlyI GAGTC 1 cut(s) 340
MnlI CCTC 4 cut(s) 48, 115, 411, 427
Mph1103I ATGCAT 1 cut(s) 457
MseI TTAA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 216, 231
MvaI CCWGG 2 cut(s) 216, 231
MwoI GCNNNNNNNGC 2 cut(s) 32, 461
NdeII GATC 1 cut(s) 448
NlaIII CATG 2 cut(s) 315, 455
NlaIV GGNNCC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 457
PceI AGGCCT 1 cut(s) 86
PfeI GAWTC 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 143
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 214, 229
PspGI CCWGG 2 cut(s) 214, 229
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 249, 404
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 249, 404
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 216, 231
SetI ASST 6 cut(s) 67, 103, 126, 165, 169, 328
SfaNI GCATC 2 cut(s) 101, 346
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 2 cut(s) 249, 404
Sse9I AATT 1 cut(s) 440
SseBI AGGCCT 1 cut(s) 86
SspI AATATT 1 cut(s) 280
SspMI CTAG 3 cut(s) 102, 164, 168
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 214, 229
TaaI ACNGT 1 cut(s) 431
TasI AATT 1 cut(s) 440
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 249, 404
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XspI CTAG 3 cut(s) 102, 164, 168
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.