Rh5AG521100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000421
Physical Location & Seq
Reverse (-)
89411239 .. 89412559
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG521100.1

Sequence Viewer

Length: 231 bp
ATGTTCGCGGCTTCTCTCCAGACGCAATCAAACTTCGTGTCGCGTCTTCTTCTACTACAGACTTCTCCGGTTCTCTCAAAGGAAACCAGCTGGAGCCTCTTCTTTCGCTTCGGAATTTCTTGCTGGTTTCAGGGGTCATTTGGAATCGTTCAAGATCCACAAAGGCAAAGGACTGTGATTAATCAAGAAATCAAAAAACACAAACTACGAGCATTAAATCATGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.84

Weight (kDa)

10.42

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 8, 43
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 114
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
AlwI GGATC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AseI ATTAAT 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 38
BclI TGATCA 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 67
Bsh1236I CGCG 2 cut(s) 8, 43
BsiSI CCGG 1 cut(s) 68
Bsp143I GATC 2 cut(s) 154, 223
BspACI CCGC 1 cut(s) 8
BspFNI CGCG 2 cut(s) 8, 43
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 149
BssMI GATC 2 cut(s) 154, 223
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 104
BstFNI CGCG 2 cut(s) 8, 43
BstKTI GATC 2 cut(s) 157, 226
BstMBI GATC 2 cut(s) 154, 223
BstSFI CTRYAG 1 cut(s) 56
BstUI CGCG 2 cut(s) 8, 43
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
CciI TCATGA 1 cut(s) 220
CseI GACGC 2 cut(s) 31, 32
CviAII CATG 1 cut(s) 221
CviJI RGCY 3 cut(s) 11, 90, 96
CviKI_1 RGCY 3 cut(s) 11, 90, 96
DpnI GATC 2 cut(s) 156, 225
DpnII GATC 2 cut(s) 154, 223
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
FaeI CATG 1 cut(s) 224
FaiI YATR 1 cut(s) 222
FatI CATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 112
HapII CCGG 1 cut(s) 68
HgaI GACGC 2 cut(s) 31, 32
Hin1II CATG 1 cut(s) 224
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 4 cut(s) 19, 152, 185, 221
HpyCH4III ACNGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 154, 223
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 32, 76, 81, 100, 109, 116
MalI GATC 2 cut(s) 156, 225
MboI GATC 2 cut(s) 154, 223
MboII GAAGA 3 cut(s) 38, 41, 91
MflI RGATCY 1 cut(s) 154
MluCI AATT 1 cut(s) 114
MnlI CCTC 1 cut(s) 107
MseI TTAA 2 cut(s) 180, 215
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 8, 43
NdeII GATC 2 cut(s) 154, 223
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 95
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 90
SaqAI TTAA 2 cut(s) 180, 215
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 154, 223
SetI ASST 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 175
TasI AATT 1 cut(s) 114
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 180, 215
Tru9I TTAA 2 cut(s) 180, 215
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.