Rw1G017400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000421
Physical Location & Seq
Reverse (-)
38525229 .. 38527138
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017400.1

Sequence Viewer

Length: 1437 bp
ATGATAAAGCACCATTGTGGAAATTTAGAATGCAAGGAGAGACTAATGAATGCAGCTCCTAGACAAGTTCCTCTACCATCATCAGGACAGCAAGGGGGGAGTTCTGGCACAAGTAGCTATGGGATGAGTTATCATGCCTATACACAAGCACAAACAGCAAGTGATGGTGGAAAGAAGAGGAAAATAGTTGCTGGTTCAGTTAAAAAGGCCTTCCAAAACTCAGCTAGGGAGCAATGCGATAGTGAGGTTGCAAGGATGTACTACACCGGTGGCTTATCTTTCAACCTAGCTAGAAATCCACACTATCGGAACTCCTACACTCGTGCTTCTACCCTTCCAGGCTACATTCCACCAGGCTACAATGCTCTAAGGACCACACTTCTTGCAAAAGAAAGGAAAAATATTGAGCATCATTTAGAGCCAATCAAGATTACATGGAAAGACAAAGGTGTGAGTCTTTGTAGTGATGGTTGGTCTGATGCACAAAGAAGACCATTTATTAATGTGATAGCCACTTGTGAGAGTGGTCCGATGATGTTGAGGGCTATAAACTGTGAGGGGGAATTCAAGGATCATGCATTGATTGCAGACTTGATTATAGATTCCATCAAGGAAGTGGGTTGGGAAAATGTTGTGCAAGTGATTACCGACAATGCTCCTGTTTGTTCTAAGGCCGGTGCCTTGATAGCAATGATGTTTAATGAACATTGCAATTTGAATTTGCTTTCGGTTGCTCCCACAAGGTTTGCATCTACGTTAATCATGCTAAAGAGGTTTAGGCAAATCAAAAATGGTTTGCAACATATGATCATCAGTCCAAAGTGGGATGATTACAAAGAAGATGATGTTAGGAAGGCTGCTTCTGTGAAACAGAAATTATTAGATGAGTTGCTATGGGATGACATTGATTACATCATTTCTTTTACTGAGCCTATCTATGAGATGATCAGGAGAGCAGACACTGATAGGCCTTCTCTTCATTTGGTGTATGAATGGTGGGATAGTATGATTGAGCAAGTGAAGAAAGCTATCTATAGGAAAGAAAGGAAGCAACCTCACGAAGAGTCTCCATTTTGGGATGCGGTGTATAAGGTTCTAATGGCTAGTTGGTCCAAGAGCAATACTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAATTCGGAATGGCTTAGTGAAGATACTAATCGTGTTGCTCCCCACAAAGATTTAGAGATTACAAGGGAGAGGAAAAATTGTATCTTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCCAATTTTTCTATGTGCATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATAGGTTTATTATGGAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCACCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

478

Amino Acids

54.48

Weight (kDa)

8.49

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 118 - 233 4.1e-31 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 677, 1396
AciI CCGC 1 cut(s) 1082
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 5 cut(s) 22, 563, 718, 1159, 1289
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 83
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 5 cut(s) 283, 568, 718, 1153, 1423
AjnI CCWGG 2 cut(s) 337, 352
AleI CACNNNNGTG 1 cut(s) 15
AluBI AGCT 6 cut(s) 56, 117, 224, 290, 1028, 1391
AluI AGCT 6 cut(s) 56, 117, 224, 290, 1028, 1391
Alw26I GTCTC 2 cut(s) 34, 1071
AlwI GGATC 1 cut(s) 579
AlwNI CAGNNNCTG 1 cut(s) 962
AoxI GGCC 3 cut(s) 207, 672, 968
ApeKI GCWGC 2 cut(s) 53, 857
ApoI RAATTY 5 cut(s) 22, 563, 718, 1159, 1289
AseI ATTAAT 1 cut(s) 501
AsiGI ACCGGT 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 372, 527, 1110
AvaII GGWCC 3 cut(s) 372, 527, 1110
BanI GGYRCC 2 cut(s) 677, 1396
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 496
BbvI GCAGC 2 cut(s) 65, 844
BccI CCATC 5 cut(s) 85, 158, 461, 614, 1408
BciT130I CCWGG 2 cut(s) 339, 354
BclI TGATCA 2 cut(s) 807, 945
BcoDI GTCTC 2 cut(s) 34, 1071
BfaI CTAG 6 cut(s) 60, 225, 287, 291, 1104, 1430
BfmI CTRYAG 1 cut(s) 1033
BisI GCNGC 2 cut(s) 54, 858
BlsI GCNGC 2 cut(s) 55, 859
Bme1390I CCNGG 2 cut(s) 339, 354
Bme18I GGWCC 3 cut(s) 372, 527, 1110
BmgT120I GGNCC 3 cut(s) 372, 527, 1110
BmiI GGNNCC 3 cut(s) 679, 1362, 1398
BmrFI CCNGG 2 cut(s) 339, 354
BmsI GCATC 5 cut(s) 418, 469, 758, 1069, 1324
BpiI GAAGAC 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 1185
BsaJI CCNNGG 1 cut(s) 1384
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 1389, 1419
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 2 cut(s) 266, 674
Bse3DI GCAATG 3 cut(s) 239, 696, 706
Bse8I GATNNNNATC 1 cut(s) 1185
BseBI CCWGG 2 cut(s) 339, 354
BseDI CCNNGG 1 cut(s) 1384
BseGI GGATG 5 cut(s) 129, 261, 832, 904, 1084
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 3 cut(s) 239, 696, 706
BseMII CTCAG 2 cut(s) 234, 918
BseXI GCAGC 2 cut(s) 65, 844
BshFI GGCC 3 cut(s) 209, 674, 970
BshNI GGYRCC 2 cut(s) 677, 1396
BshTI ACCGGT 1 cut(s) 266
BsiSI CCGG 2 cut(s) 267, 675
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 34, 1071
BsmI GAATGC 2 cut(s) 35, 55
BsnI GGCC 3 cut(s) 209, 674, 970
Bsp143I GATC 4 cut(s) 571, 807, 945, 1267
Bsp19I CCATGG 1 cut(s) 1384
BspACI CCGC 1 cut(s) 1082
BspANI GGCC 3 cut(s) 209, 674, 970
BspCNI CTCAG 2 cut(s) 233, 919
BspLI GGNNCC 3 cut(s) 679, 1362, 1398
BspPI GGATC 1 cut(s) 579
BspT107I GGYRCC 2 cut(s) 677, 1396
BsrDI GCAATG 3 cut(s) 239, 696, 706
BsrFI RCCGGY 2 cut(s) 266, 674
BssAI RCCGGY 2 cut(s) 266, 674
BssECI CCNNGG 1 cut(s) 1384
BssMI GATC 4 cut(s) 571, 807, 945, 1267
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 1384
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 339, 354
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 3 cut(s) 170, 981, 1056
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 1313
BstDEI CTNAG 5 cut(s) 220, 368, 669, 927, 1172
BstDSI CCRYGG 1 cut(s) 1384
BstF5I GGATG 5 cut(s) 129, 261, 832, 904, 1084
BstKTI GATC 4 cut(s) 574, 810, 948, 1270
BstMAI GTCTC 2 cut(s) 34, 1071
BstMBI GATC 4 cut(s) 571, 807, 945, 1267
BstMWI GCNNNNNNNGC 4 cut(s) 114, 155, 584, 686
BstNI CCWGG 2 cut(s) 339, 354
BstNSI RCATGY 1 cut(s) 1315
BstSCI CCNGG 2 cut(s) 337, 352
BstSFI CTRYAG 1 cut(s) 1033
BstV1I GCAGC 2 cut(s) 65, 844
BstV2I GAAGAC 1 cut(s) 496
BsuRI GGCC 3 cut(s) 209, 674, 970
BtgI CCRYGG 1 cut(s) 1384
BtsCI GGATG 5 cut(s) 129, 261, 832, 904, 1084
BtsIMutI CAGTG 1 cut(s) 960
Cac8I GCNNGC 1 cut(s) 1313
CaiI CAGNNNCTG 1 cut(s) 962
Cfr10I RCCGGY 2 cut(s) 266, 674
Cfr13I GGNCC 3 cut(s) 372, 527, 1110
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 266
CspCI CAANNNNNGTGG 4 cut(s) 364, 399, 727, 762
CviAII CATG 7 cut(s) 134, 435, 575, 763, 1312, 1371, 1385
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 5 cut(s) 220, 368, 669, 927, 1172
DpnI GATC 4 cut(s) 573, 809, 947, 1269
DpnII GATC 4 cut(s) 571, 807, 945, 1267
Eam1104I CTCTTC 3 cut(s) 170, 981, 1056
EarI CTCTTC 3 cut(s) 170, 981, 1056
Eco130I CCWWGG 1 cut(s) 1384
Eco147I AGGCCT 2 cut(s) 209, 970
Eco47I GGWCC 3 cut(s) 372, 527, 1110
EcoRI GAATTC 2 cut(s) 563, 1159
EcoRII CCWGG 2 cut(s) 337, 352
EcoT14I CCWWGG 1 cut(s) 1384
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 1384
FaeI CATG 7 cut(s) 137, 438, 578, 766, 1315, 1374, 1388
FatI CATG 7 cut(s) 133, 434, 574, 762, 1311, 1370, 1384
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 2 cut(s) 807, 945
Fnu4HI GCNGC 2 cut(s) 54, 858
FokI GGATG 5 cut(s) 136, 268, 839, 911, 1091
Fsp4HI GCNGC 2 cut(s) 54, 858
FspBI CTAG 6 cut(s) 60, 225, 287, 291, 1104, 1430
GluI GCNGC 2 cut(s) 54, 858
HaeIII GGCC 3 cut(s) 209, 674, 970
HapII CCGG 2 cut(s) 267, 675
Hin1II CATG 7 cut(s) 137, 438, 578, 766, 1315, 1374, 1388
HincII GTYRAC 1 cut(s) 1282
HindII GTYRAC 1 cut(s) 1282
HinfI GANTC 4 cut(s) 454, 602, 1064, 1153
HpaI GTTAAC 1 cut(s) 1282
HpaII CCGG 2 cut(s) 267, 675
Hpy166II GTNNAC 1 cut(s) 1282
Hpy188I TCNGA 5 cut(s) 309, 478, 531, 1158, 1165
Hpy188III TCNNGA 4 cut(s) 84, 427, 949, 1058
Hpy8I GTNNAC 1 cut(s) 1282
HpyAV CCTTC 7 cut(s) 220, 344, 847, 981, 1266, 1336, 1429
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 155, 584, 686
HpyF3I CTNAG 5 cut(s) 220, 368, 669, 927, 1172
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 7 cut(s) 137, 438, 578, 766, 1315, 1374, 1388
Ksp22I TGATCA 2 cut(s) 807, 945
KspAI GTTAAC 1 cut(s) 1282
Kzo9I GATC 4 cut(s) 571, 807, 945, 1267
LmnI GCTCC 7 cut(s) 61, 229, 661, 739, 1201, 1360, 1388
Lsp1109I GCAGC 2 cut(s) 65, 844
LweI GCATC 5 cut(s) 418, 469, 758, 1069, 1324
MaeI CTAG 6 cut(s) 60, 225, 287, 291, 1104, 1430
MaeII ACGT 1 cut(s) 755
MalI GATC 4 cut(s) 573, 809, 947, 1269
MboI GATC 4 cut(s) 571, 807, 945, 1267
MboII GAAGA 8 cut(s) 187, 501, 851, 968, 1033, 1073, 1190, 1274
MfeI CAATTG 1 cut(s) 1132
MlyI GAGTC 2 cut(s) 463, 1073
MnlI CCTC 8 cut(s) 81, 171, 238, 534, 550, 765, 1065, 1221
Mph1103I ATGCAT 1 cut(s) 580
MseI TTAA 6 cut(s) 201, 501, 699, 758, 1281, 1435
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 267, 675
MspR9I CCNGG 2 cut(s) 339, 354
MunI CAATTG 1 cut(s) 1132
Mva1269I GAATGC 2 cut(s) 35, 55
MvaI CCWGG 2 cut(s) 339, 354
MwoI GCNNNNNNNGC 4 cut(s) 114, 155, 584, 686
NcoI CCATGG 1 cut(s) 1384
NdeI CATATG 1 cut(s) 804
NdeII GATC 4 cut(s) 571, 807, 945, 1267
NlaIII CATG 7 cut(s) 137, 438, 578, 766, 1315, 1374, 1388
NlaIV GGNNCC 3 cut(s) 679, 1362, 1398
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 1 cut(s) 1315
OliI CACNNNNGTG 1 cut(s) 15
PaeI GCATGC 1 cut(s) 1315
PceI AGGCCT 2 cut(s) 209, 970
PctI GAATGC 2 cut(s) 35, 55
PfeI GAWTC 2 cut(s) 602, 1153
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 2 cut(s) 55, 859
PleI GAGTC 2 cut(s) 462, 1072
PpsI GAGTC 2 cut(s) 462, 1072
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 337, 352
PspGI CCWGG 2 cut(s) 337, 352
PspN4I GGNNCC 3 cut(s) 679, 1362, 1398
PspPI GGNCC 3 cut(s) 372, 527, 1110
PstNI CAGNNNCTG 1 cut(s) 962
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 6 cut(s) 201, 501, 699, 758, 1281, 1435
SatI GCNGC 2 cut(s) 54, 858
Sau3AI GATC 4 cut(s) 571, 807, 945, 1267
Sau96I GGNCC 3 cut(s) 372, 527, 1110
SchI GAGTC 2 cut(s) 463, 1073
ScrFI CCNGG 2 cut(s) 339, 354
SfaNI GCATC 5 cut(s) 418, 469, 758, 1069, 1324
SfcI CTRYAG 1 cut(s) 1033
SgrAI CRCCGGYG 1 cut(s) 266
SinI GGWCC 3 cut(s) 372, 527, 1110
SmiMI CAYNNNNRTG 1 cut(s) 15
SphI GCATGC 1 cut(s) 1315
SseBI AGGCCT 2 cut(s) 209, 970
SsiI CCGC 1 cut(s) 1082
SspI AATATT 1 cut(s) 403
SspMI CTAG 6 cut(s) 60, 225, 287, 291, 1104, 1430
StuI AGGCCT 2 cut(s) 209, 970
StyD4I CCNGG 2 cut(s) 337, 352
StyI CCWWGG 1 cut(s) 1384
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 758
TaqI TCGA 1 cut(s) 1270
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 602, 1153
Tru1I TTAA 6 cut(s) 201, 501, 699, 758, 1281, 1435
Tru9I TTAA 6 cut(s) 201, 501, 699, 758, 1281, 1435
TscAI CASTG 1 cut(s) 967
TseI GCWGC 2 cut(s) 53, 857
TspDTI ATGAA 7 cut(s) 62, 717, 968, 1005, 1137, 1275, 1355
TspRI CASTG 1 cut(s) 967
VpaK11BI GGWCC 3 cut(s) 372, 527, 1110
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 5 cut(s) 22, 563, 718, 1159, 1289
XceI RCATGY 1 cut(s) 1315
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XspI CTAG 6 cut(s) 60, 225, 287, 291, 1104, 1430
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.