Rh6CG450400

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
62756473 .. 62759825
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG450400.1

Sequence Viewer

Length: 348 bp
ATGAAAGATGTGAGAGAGGGAATTGTGTCCGCTGTTGGTCGGAATGACATTTTGACCCAAGCTTTGGAGACACCTGAGCAACCAGGCCGTGTAAGAGGTGCTGGACAATTTGTTACACACAAGGCAAAACAACAGTACAAAGGGGGGCTAATGATGAGAGAGACAGCCGCATTGGAAGATGACAATGTGATAACATCAACAGAGAAATCATATATTCCTATTCGGACAACAAATACTGTAAAAAAGTTTGAGGGAAAAGAGACTTACACTCAAGAAGAGATTGATGTACTCCGAGTAGAATGGGCAGAGCAGGTTGATGGATATATCCAAGATGAAGTACTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

5.08

Isoelectric Point (pI)

20.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 64
AciI CCGC 2 cut(s) 30, 168
AfaI GTAC 3 cut(s) 137, 288, 339
AfiI CCNNNNNNNGG 1 cut(s) 64
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 3 cut(s) 62, 155, 254
AoxI GGCC 1 cut(s) 85
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 3 cut(s) 62, 155, 254
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 3 cut(s) 62, 155, 254
BsnI GGCC 1 cut(s) 87
BspACI CCGC 2 cut(s) 30, 168
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 135, 238
Bst6I CTCTTC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 75
BstMAI GTCTC 3 cut(s) 62, 155, 254
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 87
BveI ACCTGC 1 cut(s) 301
Csp6I GTAC 3 cut(s) 136, 287, 338
CviJI RGCY 4 cut(s) 62, 87, 148, 167
CviKI_1 RGCY 4 cut(s) 62, 87, 148, 167
CviQI GTAC 3 cut(s) 136, 287, 338
DdeI CTNAG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 82
FaiI YATR 3 cut(s) 211, 213, 324
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 60
Hpy188I TCNGA 3 cut(s) 42, 225, 293
Hpy188III TCNNGA 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 135, 238
HpyF3I CTNAG 1 cut(s) 75
LpnPI CCDG 5 cut(s) 69, 87, 87, 96, 296
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 2 cut(s) 188, 287
MluCI AATT 2 cut(s) 21, 107
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 3 cut(s) 10, 89, 244
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
RsaI GTAC 3 cut(s) 137, 288, 339
RsaNI GTAC 3 cut(s) 136, 287, 338
SatI GCNGC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 84
SetI ASST 4 cut(s) 64, 76, 100, 315
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 2 cut(s) 21, 107
SsiI CCGC 2 cut(s) 30, 168
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 135, 238
TasI AATT 2 cut(s) 21, 107
TatI WGTACW 3 cut(s) 135, 286, 337
TauI GCSGC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 17, 348
Van91I CCANNNNNTGG 1 cut(s) 64
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.