Rmu_sc0005297.1_g000014

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005297.1
OG0000421
Physical Location & Seq
Forward (+)
55213 .. 55719
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005297.1_g000014.1.cds

Sequence Viewer

Length: 507 bp
atgacttttggaaaaagaaaaccaatgcttcaagtaccaatgttagaggaaaattatgaagatgtcggtgagtatgacgacaataattctgttgaagaaactcaatcaagtgctgcagatcaatcatcaagtagaaacactcaagaccaagctcaagaatcccaagaaattccaatgaattctgatgtaaagccattactcaatgaagttattatcacaggtggagcgcaaggcaaaaatccgggtggagcaaagtcttggacatgcaaacattgcaatggcaagtttgatagttcatatactcgcattcactataatttttttggtactccccctggaaaaaaattagagattcgtcaatgtcaagaattactcgccaatcgggaggaatatgagagggttcgccgaatggttatggaagctgaaaaaaaaaggagtttcttcatctttgaaaaattcaacactcttgaggcagcaaccaaaaaaatctaccgcgagtgctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

168

Amino Acids

19.31

Weight (kDa)

5.82

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 495
AciI CCGC 1 cut(s) 493
AcsI RAATTY 3 cut(s) 168, 178, 455
AfaI GTAC 2 cut(s) 36, 328
AgsI TTSAA 4 cut(s) 32, 95, 452, 460
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 2 cut(s) 152, 422
AluI AGCT 2 cut(s) 152, 422
Alw21I GWGCWC 1 cut(s) 503
ApeKI GCWGC 2 cut(s) 113, 473
ApoI RAATTY 3 cut(s) 168, 178, 455
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 2 cut(s) 100, 485
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 2 cut(s) 114, 474
BlsI GCNGC 2 cut(s) 115, 475
Bme1390I CCNGG 2 cut(s) 243, 336
BmrFI CCNGG 2 cut(s) 243, 336
BpuEI CTTGAG 3 cut(s) 126, 138, 488
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 334
Bse3DI GCAATG 2 cut(s) 271, 283
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 271, 283
BseXI GCAGC 2 cut(s) 100, 485
Bsh1236I CGCG 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 242
BsmI GAATGC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 493
BspFNI CGCG 1 cut(s) 495
BspMAI CTGCAG 1 cut(s) 118
BsrDI GCAATG 2 cut(s) 271, 283
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 273
BstFNI CGCG 1 cut(s) 495
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 241, 334
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 2 cut(s) 100, 485
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 35, 327
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 152, 193, 422
CviKI_1 RGCY 3 cut(s) 152, 193, 422
CviQI GTAC 2 cut(s) 35, 327
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 267
FaiI YATR 8 cut(s) 57, 75, 265, 298, 300, 315, 393, 416
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 114, 474
Fsp4HI GCNGC 2 cut(s) 114, 474
GlaI GCGC 1 cut(s) 228
GluI GCNGC 2 cut(s) 114, 474
HapII CCGG 1 cut(s) 242
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 158, 352
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 6 cut(s) 143, 155, 365, 383, 467, 504
HpyCH4V TGCA 3 cut(s) 116, 267, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 2 cut(s) 224, 248
LpnPI CCDG 4 cut(s) 204, 255, 321, 348
Lsp1109I GCAGC 2 cut(s) 100, 485
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 71, 107, 433
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 8 cut(s) 52, 85, 168, 178, 316, 344, 368, 455
MnlI CCTC 4 cut(s) 40, 379, 390, 463
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 243, 336
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 243
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 267
NspI RCATGY 1 cut(s) 267
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 158, 352
PkrI GCNGC 2 cut(s) 115, 475
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 2 cut(s) 36, 328
RsaNI GTAC 2 cut(s) 35, 327
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 2 cut(s) 114, 474
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 243, 336
SduI GDGCHC 1 cut(s) 503
SetI ASST 3 cut(s) 154, 223, 424
SfcI CTRYAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 3 cut(s) 141, 153, 467
SmoI CTYRAG 3 cut(s) 141, 153, 467
Sse9I AATT 8 cut(s) 52, 85, 168, 178, 316, 344, 368, 455
SsiI CCGC 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 241, 334
TasI AATT 8 cut(s) 52, 85, 168, 178, 316, 344, 368, 455
TfiI GAWTC 2 cut(s) 158, 352
TseI GCWGC 2 cut(s) 113, 473
TspDTI ATGAA 5 cut(s) 72, 191, 219, 285, 433
XapI RAATTY 3 cut(s) 168, 178, 455
XceI RCATGY 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.