Rmu_sc0000507.1_g000007

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000507.1
OG0000421
Physical Location & Seq
Reverse (-)
47687 .. 49997
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000507.1_g000007.1.cds

Sequence Viewer

Length: 1038 bp
atgagcagcgaaggaacacctcctattagttctagtgccgggtctgttaacgccggtgctagtagtggatctgctgatcctgaaaatgagaccattgatgataaagcaccattgtggaaatttgtgaagaagattgaaaaaatggcaggtggaggaagttggaggtggcagtgcagtttttgcaaattgcactacaacgggtcttatattagagttcgtggtcatttgttgaaagaaggaacagcgggggcggcagtttgcaacaaggttactcctcattgtccaagttggtattatagttcggaatggcttagtgaagatactaatcgtgttgctccccacaaagatttagagattacaagggagaggaaaaattgtatccttagatactttgccaatgaagatgatcgaaggaaagttaacatagaatttgccaatttttctatgtgcatgcaagagtttggaagtggagatgctatgaaggataggtttattatggagcctataacatggtgggctgtccatggagcttcggcaccatctctccaagccatagccttcaaggttctagatgagttgttgtgggatgacattgattacatcatttcttttattgagcctatctatgagatgatcaggagagtagacactgataggccttctcttcatttggtgtatgaatggtgggatagtatgattgagcaagtgaagaaagctatctataggaaagaaaggaagcaacctcatcaagagtctccatttcgggatgcggtgtatagggttctaatggctcgttggtccaagagcaatacttctctcaattgcttggcacattcattgaatccgaacccaagttacaatgagagtgcaactcaaatgtgggatgttggaggtgatgagtttgattctttggaagagactaatgttggaaggattgagattgctaacctttcacttgatgaaccacaattagagggggttttgtttaatgttgatcatgaagatgaagaccttgaggatgttgtccaagttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

345

Amino Acids

39.46

Weight (kDa)

4.94

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 1 cut(s) 645
AciI CCGC 3 cut(s) 245, 251, 770
AclWI GGATC 2 cut(s) 71, 76
AcsI RAATTY 2 cut(s) 119, 428
AgsI TTSAA 5 cut(s) 137, 232, 562, 841, 1034
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 2 cut(s) 530, 716
AluI AGCT 2 cut(s) 530, 716
Alw26I GTCTC 3 cut(s) 83, 759, 911
AlwI GGATC 2 cut(s) 71, 76
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 2 cut(s) 119, 428
AspS9I GGNCC 1 cut(s) 798
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 905
AvaII GGWCC 1 cut(s) 798
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 1014
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 547
BciVI GTATCC 1 cut(s) 389
BclI TGATCA 2 cut(s) 633, 994
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 3 cut(s) 83, 759, 911
BfaI CTAG 3 cut(s) 33, 60, 569
BfmI CTRYAG 1 cut(s) 721
BfuAI ACCTGC 1 cut(s) 137
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 2 cut(s) 7, 252
BlsI GCNGC 2 cut(s) 8, 253
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 798
BmiI GGNNCC 2 cut(s) 501, 537
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 2 cut(s) 463, 757
BpiI GAAGAC 1 cut(s) 1014
BplI GAGNNNNNCTC 2 cut(s) 856, 888
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bse118I RCCGGY 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 4 cut(s) 592, 772, 889, 1024
BseJI GATNNNNATC 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 193
BshFI GGCC 1 cut(s) 658
BshNI GGYRCC 1 cut(s) 535
BsiSI CCGG 2 cut(s) 39, 54
BsmAI GTCTC 3 cut(s) 83, 759, 911
BsnI GGCC 1 cut(s) 658
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 5 cut(s) 68, 76, 406, 633, 994
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 3 cut(s) 245, 251, 770
BspANI GGCC 1 cut(s) 658
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 2 cut(s) 501, 537
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 2 cut(s) 71, 76
BspT107I GGYRCC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 5 cut(s) 68, 76, 406, 633, 994
BssT1I CCWWGG 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 669, 909
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 311, 383
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 4 cut(s) 592, 772, 889, 1024
BstKTI GATC 5 cut(s) 71, 79, 409, 636, 997
BstMAI GTCTC 3 cut(s) 83, 759, 911
BstMBI GATC 5 cut(s) 68, 76, 406, 633, 994
BstMWI GCNNNNNNNGC 2 cut(s) 180, 251
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 721
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 658
BtgI CCRYGG 1 cut(s) 523
BtsCI GGATG 4 cut(s) 592, 772, 889, 1024
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 176, 648
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 452
CciI TCATGA 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 798
CviAII CATG 4 cut(s) 451, 510, 524, 998
DdeI CTNAG 2 cut(s) 311, 383
DpnI GATC 5 cut(s) 70, 78, 408, 635, 996
DpnII GATC 5 cut(s) 68, 76, 406, 633, 994
Eam1104I CTCTTC 2 cut(s) 669, 909
EarI CTCTTC 2 cut(s) 669, 909
Eco130I CCWWGG 1 cut(s) 523
Eco147I AGGCCT 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 4 cut(s) 454, 513, 527, 1001
FatI CATG 4 cut(s) 450, 509, 523, 997
FauI CCCGC 1 cut(s) 238
FbaI TGATCA 2 cut(s) 633, 994
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 2 cut(s) 7, 252
FokI GGATG 4 cut(s) 599, 779, 896, 1031
Fsp4HI GCNGC 2 cut(s) 7, 252
FspBI CTAG 3 cut(s) 33, 60, 569
GluI GCNGC 2 cut(s) 7, 252
HaeIII GGCC 1 cut(s) 658
HapII CCGG 2 cut(s) 39, 54
Hin1II CATG 4 cut(s) 454, 513, 527, 1001
HincII GTYRAC 2 cut(s) 49, 421
HindII GTYRAC 2 cut(s) 49, 421
HinfI GANTC 3 cut(s) 752, 841, 905
HpaI GTTAAC 2 cut(s) 49, 421
HpaII CCGG 2 cut(s) 39, 54
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 3 cut(s) 49, 421, 646
Hpy188I TCNGA 2 cut(s) 304, 846
Hpy188III TCNNGA 6 cut(s) 80, 569, 637, 749, 764, 998
Hpy8I GTNNAC 3 cut(s) 49, 421, 646
HpyAV CCTTC 7 cut(s) 5, 230, 405, 475, 568, 669, 924
HpyCH4V TGCA 7 cut(s) 174, 183, 190, 261, 450, 454, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 251
HpyF3I CTNAG 2 cut(s) 311, 383
Hsp92II CATG 4 cut(s) 454, 513, 527, 1001
Ksp22I TGATCA 2 cut(s) 633, 994
KspAI GTTAAC 2 cut(s) 49, 421
Kzo9I GATC 5 cut(s) 68, 76, 406, 633, 994
LmnI GCTCC 3 cut(s) 340, 499, 527
LpnPI CCDG 5 cut(s) 52, 67, 93, 132, 622
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 463, 757
MaeI CTAG 3 cut(s) 33, 60, 569
MaeIII GTNAC 2 cut(s) 268, 854
MalI GATC 5 cut(s) 70, 78, 408, 635, 996
MboI GATC 5 cut(s) 68, 76, 406, 633, 994
MboII GAAGA 9 cut(s) 139, 142, 329, 413, 656, 721, 926, 1013, 1019
MfeI CAATTG 1 cut(s) 820
MflI RGATCY 1 cut(s) 68
MluCI AATT 7 cut(s) 119, 185, 373, 428, 436, 820, 968
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 3 cut(s) 140, 868, 907
MnlI CCTC 9 cut(s) 30, 146, 156, 285, 360, 753, 884, 967, 1009
MseI TTAA 3 cut(s) 48, 420, 987
MslI CAYNNNNRTG 2 cut(s) 112, 1002
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 39, 54
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 820
MwoI GCNNNNNNNGC 2 cut(s) 180, 251
NciI CCSGG 1 cut(s) 40
NcoI CCATGG 1 cut(s) 523
NdeII GATC 5 cut(s) 68, 76, 406, 633, 994
NlaIII CATG 4 cut(s) 454, 513, 527, 1001
NlaIV GGNNCC 2 cut(s) 501, 537
NspI RCATGY 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 112
PaeI GCATGC 1 cut(s) 454
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 137
PceI AGGCCT 1 cut(s) 658
PfeI GAWTC 2 cut(s) 841, 905
PkrI GCNGC 2 cut(s) 8, 253
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PspN4I GGNNCC 2 cut(s) 501, 537
PspPI GGNCC 1 cut(s) 798
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
PsuI RGATCY 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 112, 1002
SaqAI TTAA 3 cut(s) 48, 420, 987
SatI GCNGC 2 cut(s) 7, 252
Sau3AI GATC 5 cut(s) 68, 76, 406, 633, 994
Sau96I GGNCC 1 cut(s) 798
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 1 cut(s) 40
SfaNI GCATC 2 cut(s) 463, 757
SfcI CTRYAG 1 cut(s) 721
SgrAI CRCCGGYG 1 cut(s) 53
SinI GGWCC 1 cut(s) 798
SmiMI CAYNNNNRTG 2 cut(s) 112, 1002
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SphI GCATGC 1 cut(s) 454
Sse9I AATT 7 cut(s) 119, 185, 373, 428, 436, 820, 968
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 3 cut(s) 245, 251, 770
SspMI CTAG 3 cut(s) 33, 60, 569
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 523
TaqI TCGA 1 cut(s) 409
TasI AATT 7 cut(s) 119, 185, 373, 428, 436, 820, 968
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 841, 905
Tru1I TTAA 3 cut(s) 48, 420, 987
Tru9I TTAA 3 cut(s) 48, 420, 987
TscAI CASTG 2 cut(s) 176, 655
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 8 cut(s) 414, 494, 656, 693, 825, 975, 1014, 1020
TspRI CASTG 2 cut(s) 176, 655
VpaK11BI GGWCC 1 cut(s) 798
XapI RAATTY 2 cut(s) 119, 428
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 3 cut(s) 33, 60, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.