Rroxscaffold_4G00295340

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000421
Physical Location & Seq
Reverse (-)
15390027 .. 15393843
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295340.1

Sequence Viewer

Length: 336 bp
ATGTCTAGTAGTGCATGCAGCTTTAAGCTAAAATCAATCGGACTTCTCATCTTCTTCGATTCGCTTGGAGCTTCAATCAAACTCGCTTCGGGAGCCATGAGTGATGGAGGAACACCTCCTATTAGTTTTAGTGCCGGGTTTGTTAACGTTGGTACTAGTAGTGGAGCTGCTGATCTTGAAAATGAGATCATATATGATAAAGCACTGTTGTGGAAATTTGTGAAGAAGATTAAAAAACAGCAAGGTGGAGGATGTTGGAGGTGGCGGTGCAATTTCTGCAAATTGTACTATAACAGTTCTTATACTAGAGTTCGTGGTCATTTGTTGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

111

Amino Acids

12.16

Weight (kDa)

9.54

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AclI AACGTT 1 cut(s) 147
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 2 cut(s) 154, 287
AgsI TTSAA 3 cut(s) 75, 179, 328
AhlI ACTAGT 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 208
AluBI AGCT 4 cut(s) 21, 28, 71, 167
AluI AGCT 4 cut(s) 21, 28, 71, 167
ApeKI GCWGC 2 cut(s) 18, 167
ApoI RAATTY 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 136
BbvI GCAGC 2 cut(s) 30, 154
BccI CCATC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 3 cut(s) 6, 156, 306
BisI GCNGC 2 cut(s) 19, 168
BlsI GCNGC 2 cut(s) 20, 169
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 30, 154
BsiSI CCGG 1 cut(s) 135
Bsp143I GATC 2 cut(s) 172, 186
BspACI CCGC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 94
BssMI GATC 2 cut(s) 172, 186
Bst4CI ACNGT 2 cut(s) 207, 296
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 2 cut(s) 175, 189
BstMBI GATC 2 cut(s) 172, 186
BstMWI GCNNNNNNNGC 2 cut(s) 92, 276
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 30, 154
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 153, 286
CviAII CATG 2 cut(s) 15, 97
CviJI RGCY 5 cut(s) 21, 28, 71, 95, 167
CviKI_1 RGCY 5 cut(s) 21, 28, 71, 95, 167
CviQI GTAC 2 cut(s) 153, 286
DpnI GATC 2 cut(s) 174, 188
DpnII GATC 2 cut(s) 172, 186
FaeI CATG 2 cut(s) 18, 100
FaiI YATR 7 cut(s) 16, 98, 191, 193, 195, 291, 303
FatI CATG 2 cut(s) 14, 96
Fnu4HI GCNGC 2 cut(s) 19, 168
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 19, 168
FspBI CTAG 3 cut(s) 6, 156, 306
GluI GCNGC 2 cut(s) 19, 168
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 18, 100
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 59
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 2 cut(s) 90, 176
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 207, 296
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 14, 18, 270, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 276
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 18, 100
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 172, 186
LmnI GCTCC 3 cut(s) 68, 92, 164
LpnPI CCDG 1 cut(s) 148
Lsp1109I GCAGC 2 cut(s) 30, 154
MaeI CTAG 3 cut(s) 6, 156, 306
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 174, 188
MboI GATC 2 cut(s) 172, 186
MboII GAAGA 4 cut(s) 43, 46, 235, 238
MluCI AATT 3 cut(s) 215, 271, 281
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 101, 126, 242, 252
MseI TTAA 3 cut(s) 24, 144, 231
MslI CAYNNNNRTG 1 cut(s) 208
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 92, 276
NciI CCSGG 1 cut(s) 136
NdeII GATC 2 cut(s) 172, 186
NlaIII CATG 2 cut(s) 18, 100
NlaIV GGNNCC 1 cut(s) 94
NspI RCATGY 1 cut(s) 18
OliI CACNNNNGTG 1 cut(s) 208
PaeI GCATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 20, 169
Psp1406I AACGTT 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 94
RsaI GTAC 2 cut(s) 154, 287
RsaNI GTAC 2 cut(s) 153, 286
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 3 cut(s) 24, 144, 231
SatI GCNGC 2 cut(s) 19, 168
Sau3AI GATC 2 cut(s) 172, 186
ScrFI CCNGG 1 cut(s) 136
SetI ASST 8 cut(s) 23, 30, 73, 118, 150, 169, 247, 263
SmiMI CAYNNNNRTG 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 155
SphI GCATGC 1 cut(s) 18
Sse9I AATT 3 cut(s) 215, 271, 281
SsiI CCGC 1 cut(s) 265
SspMI CTAG 3 cut(s) 6, 156, 306
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 207, 296
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 57
TasI AATT 3 cut(s) 215, 271, 281
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 3 cut(s) 24, 144, 231
Tru9I TTAA 3 cut(s) 24, 144, 231
TscAI CASTG 1 cut(s) 210
TseI GCWGC 2 cut(s) 18, 167
TspRI CASTG 1 cut(s) 210
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 18
XspI CTAG 3 cut(s) 6, 156, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.