Rh5DG458000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000421
Physical Location & Seq
Reverse (-)
72814535 .. 72816276
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG458000.1

Sequence Viewer

Length: 255 bp
ATGTTCAAGATTATGGACAAAAATTCTGTTGACATGAAGGTGATGAGAGGATTATGCGCTAATGGAATTCCATTTAATGTGTTGAGAAACCCCCACTTTCATGAGATGATTTCAACTATAAATAATGGACCCAGAGGTTATAAGGCTCCATCTTATGAAAAAGCAAGAACTACTTTGCTTGATGAGTGTAAACGAAGTCTGGAAAATGAATTAGCTCCTGTTAAAGATACATGGTTTACTCACGATTCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

84

Amino Acids

9.72

Weight (kDa)

8.64

Isoelectric Point (pI)

18.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AcsI RAATTY 2 cut(s) 22, 66
AgsI TTSAA 2 cut(s) 7, 114
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
ApoI RAATTY 2 cut(s) 22, 66
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 128
BccI CCATC 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 130, 147
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 130, 147
BstHHI GCGC 1 cut(s) 59
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 3 cut(s) 34, 101, 231
CviJI RGCY 2 cut(s) 146, 215
CviKI_1 RGCY 2 cut(s) 146, 215
Eco47I GGWCC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 66
FaeI CATG 3 cut(s) 37, 104, 234
FaiI YATR 8 cut(s) 14, 35, 55, 102, 119, 141, 156, 232
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FatI CATG 3 cut(s) 33, 100, 230
GlaI GCGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 37, 104, 234
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 245
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 3 cut(s) 31, 191, 237
Hpy188III TCNNGA 4 cut(s) 7, 101, 200, 242
Hpy8I GTNNAC 3 cut(s) 31, 191, 237
HpyAV CCTTC 1 cut(s) 31
Hsp92II CATG 3 cut(s) 37, 104, 234
HspAI GCGC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 151, 220
LpnPI CCDG 3 cut(s) 145, 185, 231
MluCI AATT 3 cut(s) 22, 66, 209
MnlI CCTC 2 cut(s) 41, 128
MseI TTAA 3 cut(s) 75, 222, 253
MslI CAYNNNNRTG 2 cut(s) 38, 99
NlaIII CATG 3 cut(s) 37, 104, 234
NlaIV GGNNCC 2 cut(s) 130, 147
PagI TCATGA 1 cut(s) 100
PfeI GAWTC 1 cut(s) 245
PsiI TTATAA 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 130, 147
PspPI GGNCC 1 cut(s) 128
RseI CAYNNNNRTG 2 cut(s) 38, 99
SaqAI TTAA 3 cut(s) 75, 222, 253
Sau96I GGNCC 1 cut(s) 128
SetI ASST 3 cut(s) 42, 139, 217
SgeI CNNG 9 cut(s) 19, 46, 113, 144, 177, 191, 212, 230, 243
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 2 cut(s) 38, 99
Sse9I AATT 3 cut(s) 22, 66, 209
TasI AATT 3 cut(s) 22, 66, 209
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 75, 222, 253
Tru9I TTAA 3 cut(s) 75, 222, 253
TspDTI ATGAA 4 cut(s) 50, 89, 171, 222
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 2 cut(s) 22, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.