FvH4_4g02102

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000421
Physical Location & Seq
Forward (+)
1941992 .. 1952094
10103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02102.t1

Sequence Viewer

Length: 1089 bp
ATGCTAACGAAAACCGATGAGATCACATCGGGAAGAGGTCGCCGCATTCCACCCGTTCATCTCCTAAGCACCCACCTCATTGTTGGTCGGTCGCGTGTCTTCCTCACAGAGACAGCGAGGAGATTTGTTCCTTACCTATCTTTTGGCTTTGCTTATTTGCTCGGCACAGAAACATCACATTGTTCAATTCGCCTAACGCCCGCTGCTAGGCGCGTGACTAAAGAGATCCAAAACCCGCGGCTAGGCGGGTTTACAGGGATCATAAGTGTTGACAGGTTAGGAGTTCCGGTGACGTCCATCCTTTTGGTCATCGCCTCATCGGTGGCAATAGAATTATTGGAAAGAGATCGATTTGTGGAAGCATTTACGCAGACTGGGTTAATATGGGGAGTGGATTGTCATGTTGGAGGGATTGAGCTCCAGGTGACCATTGCAAACAGTAGAGGGCTTTATGGATACCATTGCATCCTTCTCTTCAACTCTAGGTCCACCTTCCTCGACCAAAATGAACTGACACAATTCCGGTCGTGGGTGGCGGTGATGGCTCCAGGTCTAGAAGGATATGTGACGTCCTCTCTGTGCTCTTCTCTTCACCGAATCGATTCCCAGACGAAGAAGACGCTCACCTTTCGCCACCCATTCTCACCATTCGCCAGTCGCGCCAATCAGCCACCCAGTCGATCTGGTCACCGATCTGACCTCTTCTCTCTACTGTCCGCCATCGCCAGTCGCCAGTCGCCAGTCGCCAATCCGCCAGTCGCCACCCCGCCAGTCGCCAGTCCGCCGGTTGTAAGGATGAGCTCAAGTGCTGCTTCAACTGAACCTAGTGTTGAGTCGAATGAGCCAGAAAAAATCAGCGCTCCTCTTTGGAAATATGTCACTAAAGAGCCAGTGATTGATGTTGATGGGACAGTGGCCCTTCCACTCTCGGCCTCTCCTCTGCTGTCTCCAAGTCTCTCCAACCCTCTCAAGCTCATAGCATCCACGCTCCTTCACTGTTTTTCCGGTCTCAACCGTCTCCTCTGCCTTGATGCTCGGTTCAAGAACTCTGCCTCCTCAATCTCTAGTACGGCCTCCTGCTTCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

39.29

Weight (kDa)

9.5

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 296, 572
AccII CGCG 4 cut(s) 94, 213, 238, 660
AclWI GGATC 2 cut(s) 220, 266
AcyI GRCGYC 2 cut(s) 293, 569
AfaI GTAC 1 cut(s) 1069
AfeI AGCGCT 1 cut(s) 859
AfiI CCNNNNNNNGG 3 cut(s) 207, 242, 529
AgsI TTSAA 4 cut(s) 186, 478, 816, 1042
AjnI CCWGG 2 cut(s) 420, 547
AloI GAACNNNNNNTCC 2 cut(s) 1037, 1069
AluBI AGCT 3 cut(s) 418, 801, 973
AluI AGCT 3 cut(s) 418, 801, 973
Alw21I GWGCWC 3 cut(s) 420, 584, 803
Alw26I GTCTC 5 cut(s) 104, 951, 959, 1013, 1022
AlwI GGATC 2 cut(s) 220, 266
Aor51HI AGCGCT 1 cut(s) 859
AoxI GGCC 3 cut(s) 915, 930, 1071
ApeKI GCWGC 2 cut(s) 203, 809
Asp700I GAANNNNTTC 1 cut(s) 601
AspLEI GCGC 3 cut(s) 213, 662, 860
AspS9I GGNCC 2 cut(s) 486, 916
AsuHPI GGTGA 7 cut(s) 301, 436, 550, 584, 616, 636, 680
AvaII GGWCC 1 cut(s) 486
BanII GRGCYC 2 cut(s) 420, 803
BbsI GAAGAC 2 cut(s) 91, 623
Bbv12I GWGCWC 3 cut(s) 420, 584, 803
BbvI GCAGC 2 cut(s) 190, 796
BccI CCATC 4 cut(s) 305, 535, 728, 899
BceAI ACGGC 1 cut(s) 1086
BciT130I CCWGG 2 cut(s) 422, 549
BciVI GTATCC 1 cut(s) 449
BcoDI GTCTC 5 cut(s) 104, 951, 959, 1013, 1022
BfaI CTAG 6 cut(s) 207, 242, 483, 554, 825, 1065
BfoI RGCGCY 1 cut(s) 861
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 4 cut(s) 43, 204, 239, 810
BlsI GCNGC 4 cut(s) 44, 205, 240, 811
Bme1390I CCNGG 2 cut(s) 422, 549
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 2 cut(s) 486, 916
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 2 cut(s) 422, 549
BmrI ACTGGG 2 cut(s) 384, 669
BmsI GCATC 3 cut(s) 474, 989, 1021
BmuI ACTGGG 2 cut(s) 384, 669
BpiI GAAGAC 2 cut(s) 91, 623
BpmI CTGGAG 2 cut(s) 404, 531
Bpu10I CCTNAGC 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 787, 953
Bsa29I ATCGAT 2 cut(s) 349, 600
BsaHI GRCGYC 2 cut(s) 293, 569
BsaI GGTCTC 1 cut(s) 1013
BsaJI CCNNGG 1 cut(s) 236
BsaWI WCCGGW 3 cut(s) 286, 522, 1004
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 1037, 1067
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 242, 529
Bse118I RCCGGY 1 cut(s) 784
Bse3DI GCAATG 2 cut(s) 429, 460
BseBI CCWGG 2 cut(s) 422, 549
BseCI ATCGAT 2 cut(s) 349, 600
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 4 cut(s) 297, 465, 801, 980
BseLI CCNNNNNNNGG 3 cut(s) 207, 242, 529
BseMI GCAATG 2 cut(s) 429, 460
BseRI GAGGAG 5 cut(s) 133, 852, 927, 1010, 1045
BseXI GCAGC 2 cut(s) 190, 796
Bsh1236I CGCG 4 cut(s) 94, 213, 238, 660
Bsh1285I CGRYCG 2 cut(s) 92, 527
BshFI GGCC 3 cut(s) 917, 932, 1073
BshVI ATCGAT 2 cut(s) 349, 600
BsiEI CGRYCG 2 cut(s) 92, 527
BsiHKAI GWGCWC 3 cut(s) 420, 584, 803
BsiSI CCGG 4 cut(s) 287, 523, 785, 1005
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 3 cut(s) 207, 242, 529
BsmAI GTCTC 5 cut(s) 104, 951, 959, 1013, 1022
BsmBI CGTCTC 1 cut(s) 1022
BsmFI GGGAC 1 cut(s) 922
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 3 cut(s) 917, 932, 1073
Bso31I GGTCTC 1 cut(s) 1013
Bsp1286I GDGCHC 3 cut(s) 420, 584, 803
Bsp143I GATC 6 cut(s) 21, 225, 258, 346, 680, 692
BspANI GGCC 3 cut(s) 917, 932, 1073
BspDI ATCGAT 2 cut(s) 349, 600
BspFNI CGCG 4 cut(s) 94, 213, 238, 660
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 2 cut(s) 220, 266
BspQI GCTCTTC 1 cut(s) 589
BspTNI GGTCTC 1 cut(s) 1013
BsrDI GCAATG 2 cut(s) 429, 460
BsrFI RCCGGY 1 cut(s) 784
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 6 cut(s) 21, 225, 258, 346, 680, 692
BssNI GRCGYC 2 cut(s) 293, 569
Bst2UI CCWGG 2 cut(s) 422, 549
Bst4CI ACNGT 5 cut(s) 440, 714, 913, 998, 1016
Bst6I CTCTTC 5 cut(s) 28, 479, 589, 594, 707
BstACI GRCGYC 2 cut(s) 293, 569
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 236
BstEII GGTNACC 2 cut(s) 424, 686
BstF5I GGATG 4 cut(s) 297, 465, 801, 980
BstFNI CGCG 4 cut(s) 94, 213, 238, 660
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 3 cut(s) 213, 662, 860
BstKTI GATC 6 cut(s) 24, 228, 261, 349, 683, 695
BstMAI GTCTC 5 cut(s) 104, 951, 959, 1013, 1022
BstMBI GATC 6 cut(s) 21, 225, 258, 346, 680, 692
BstMCI CGRYCG 2 cut(s) 92, 527
BstMWI GCNNNNNNNGC 2 cut(s) 542, 659
BstNI CCWGG 2 cut(s) 422, 549
BstPI GGTNACC 2 cut(s) 424, 686
BstSCI CCNGG 2 cut(s) 420, 547
BstUI CGCG 4 cut(s) 94, 213, 238, 660
BstV1I GCAGC 2 cut(s) 190, 796
BstV2I GAAGAC 2 cut(s) 91, 623
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 225
Bsu15I ATCGAT 2 cut(s) 349, 600
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 3 cut(s) 917, 932, 1073
BsuTUI ATCGAT 2 cut(s) 349, 600
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 2 cut(s) 295, 706
BtsCI GGATG 4 cut(s) 297, 465, 801, 980
BtsIMutI CAGTG 3 cut(s) 897, 918, 994
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 3 cut(s) 213, 662, 860
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 486, 916
Cfr42I CCGCGG 1 cut(s) 239
ClaI ATCGAT 2 cut(s) 349, 600
CseI GACGC 1 cut(s) 628
Csp6I GTAC 1 cut(s) 1068
CviAII CATG 1 cut(s) 401
CviQI GTAC 1 cut(s) 1068
DdeI CTNAG 1 cut(s) 65
DpnI GATC 6 cut(s) 23, 227, 260, 348, 682, 694
DpnII GATC 6 cut(s) 21, 225, 258, 346, 680, 692
Eam1104I CTCTTC 5 cut(s) 28, 479, 589, 594, 707
EarI CTCTTC 5 cut(s) 28, 479, 589, 594, 707
EciI GGCGGA 3 cut(s) 706, 741, 771
Ecl136II GAGCTC 2 cut(s) 418, 801
Eco24I GRGCYC 2 cut(s) 420, 803
Eco31I GGTCTC 1 cut(s) 1013
Eco47I GGWCC 1 cut(s) 486
Eco47III AGCGCT 1 cut(s) 859
Eco53kI GAGCTC 2 cut(s) 418, 801
Eco91I GGTNACC 2 cut(s) 424, 686
EcoICRI GAGCTC 2 cut(s) 418, 801
EcoO65I GGTNACC 2 cut(s) 424, 686
EcoRII CCWGG 2 cut(s) 420, 547
EcoT38I GRGCYC 2 cut(s) 420, 803
Esp3I CGTCTC 1 cut(s) 1022
FaeI CATG 1 cut(s) 404
FaiI YATR 8 cut(s) 263, 385, 402, 453, 564, 876, 977, 1087
FalI AAGNNNNNCTT 2 cut(s) 796, 828
FaqI GGGAC 1 cut(s) 922
FatI CATG 1 cut(s) 400
FauI CCCGC 4 cut(s) 208, 239, 243, 774
Fnu4HI GCNGC 4 cut(s) 43, 204, 239, 810
FokI GGATG 4 cut(s) 284, 452, 808, 967
FriOI GRGCYC 2 cut(s) 420, 803
Fsp4HI GCNGC 4 cut(s) 43, 204, 239, 810
FspBI CTAG 6 cut(s) 207, 242, 483, 554, 825, 1065
GlaI GCGC 3 cut(s) 212, 661, 859
GluI GCNGC 4 cut(s) 43, 204, 239, 810
GsuI CTGGAG 2 cut(s) 404, 531
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 3 cut(s) 917, 932, 1073
HapII CCGG 4 cut(s) 287, 523, 785, 1005
HgaI GACGC 1 cut(s) 628
HhaI GCGC 3 cut(s) 213, 662, 860
Hin1I GRCGYC 2 cut(s) 293, 569
Hin1II CATG 1 cut(s) 404
Hin6I GCGC 3 cut(s) 211, 660, 858
HinP1I GCGC 3 cut(s) 211, 660, 858
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 3 cut(s) 597, 602, 833
HpaII CCGG 4 cut(s) 287, 523, 785, 1005
HphI GGTGA 7 cut(s) 301, 436, 550, 584, 616, 636, 680
Hpy166II GTNNAC 3 cut(s) 252, 271, 489
Hpy188I TCNGA 1 cut(s) 697
Hpy188III TCNNGA 3 cut(s) 30, 554, 1042
Hpy8I GTNNAC 3 cut(s) 252, 271, 489
HpyAV CCTTC 5 cut(s) 479, 502, 551, 929, 1001
HpyCH4III ACNGT 5 cut(s) 440, 714, 913, 998, 1016
HpyCH4IV ACGT 2 cut(s) 293, 569
HpyCH4V TGCA 2 cut(s) 434, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 659
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 2 cut(s) 293, 569
Hsp92I GRCGYC 2 cut(s) 293, 569
Hsp92II CATG 1 cut(s) 404
HspAI GCGC 3 cut(s) 211, 660, 858
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 6 cut(s) 21, 225, 258, 346, 680, 692
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 4 cut(s) 423, 550, 865, 993
Lsp1109I GCAGC 2 cut(s) 190, 796
LweI GCATC 3 cut(s) 474, 989, 1021
MaeI CTAG 6 cut(s) 207, 242, 483, 554, 825, 1065
MaeII ACGT 2 cut(s) 293, 569
MaeIII GTNAC 6 cut(s) 214, 289, 424, 565, 686, 877
MalI GATC 6 cut(s) 23, 227, 260, 348, 682, 694
MboI GATC 6 cut(s) 21, 225, 258, 346, 680, 692
MboII GAAGA 8 cut(s) 45, 91, 466, 576, 581, 625, 628, 694
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 3 cut(s) 420, 584, 803
MluCI AATT 3 cut(s) 186, 332, 518
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 2 cut(s) 385, 984
MroXI GAANNNNTTC 1 cut(s) 601
MseI TTAA 1 cut(s) 380
MspA1I CMGCKG 2 cut(s) 203, 238
MspI CCGG 4 cut(s) 287, 523, 785, 1005
MspR9I CCNGG 2 cut(s) 422, 549
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 2 cut(s) 422, 549
MvnI CGCG 4 cut(s) 94, 213, 238, 660
MwoI GCNNNNNNNGC 2 cut(s) 542, 659
NdeII GATC 6 cut(s) 21, 225, 258, 346, 680, 692
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 2 cut(s) 141, 908
NmuCI GTSAC 6 cut(s) 214, 289, 424, 565, 686, 877
PciSI GCTCTTC 1 cut(s) 589
PctI GAATGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 2 cut(s) 597, 602
PkrI GCNGC 4 cut(s) 44, 205, 240, 811
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
Psp124BI GAGCTC 2 cut(s) 420, 803
Psp6I CCWGG 2 cut(s) 420, 547
PspEI GGTNACC 2 cut(s) 424, 686
PspGI CCWGG 2 cut(s) 420, 547
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 2 cut(s) 486, 916
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 1 cut(s) 1069
RsaNI GTAC 1 cut(s) 1068
SacI GAGCTC 2 cut(s) 420, 803
SacII CCGCGG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 589
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 4 cut(s) 43, 204, 239, 810
Sau3AI GATC 6 cut(s) 21, 225, 258, 346, 680, 692
Sau96I GGNCC 2 cut(s) 486, 916
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 2 cut(s) 422, 549
SduI GDGCHC 3 cut(s) 420, 584, 803
SfaNI GCATC 3 cut(s) 474, 989, 1021
Sfr303I CCGCGG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 802, 968
SmoI CTYRAG 2 cut(s) 802, 968
Sse9I AATT 3 cut(s) 186, 332, 518
SspMI CTAG 6 cut(s) 207, 242, 483, 554, 825, 1065
SstI GAGCTC 2 cut(s) 420, 803
StyD4I CCNGG 2 cut(s) 420, 547
TaaI ACNGT 5 cut(s) 440, 714, 913, 998, 1016
TaiI ACGT 2 cut(s) 296, 572
TaqI TCGA 5 cut(s) 349, 498, 600, 679, 836
TaqII GACCGA 1 cut(s) 78
TasI AATT 3 cut(s) 186, 332, 518
TauI GCSGC 2 cut(s) 45, 241
TfiI GAWTC 2 cut(s) 597, 602
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 3 cut(s) 897, 918, 1001
TseFI GTSAC 6 cut(s) 214, 289, 424, 565, 686, 877
TseI GCWGC 2 cut(s) 203, 809
Tsp45I GTSAC 6 cut(s) 214, 289, 424, 565, 686, 877
TspDTI ATGAA 2 cut(s) 47, 522
TspRI CASTG 3 cut(s) 897, 918, 1001
VpaK11BI GGWCC 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 6 cut(s) 207, 242, 483, 554, 825, 1065
ZraI GACGTC 2 cut(s) 294, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.