RchiOBHm_Chr7g0205371

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000421
Physical Location & Seq
Forward (+)
23036229 .. 23037036
808 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18378

Sequence Viewer

Length: 606 bp
ATGGCACATTCATTGAATCCAAGATATTATAGCATGGAATATCTTCATGGAGCTCCTAATCGTCTTCCTCCACATCAAGATAGTGAGATTTCTAAGGAAAGAAAAGAATGTCTTAAGAAATACTATGCTAATGAAGAGGAAAGACGAAGTGTGAATGAGGAGTTTGCCTCTTTTTCGGCATGCTTGGATGAATTTGCAAGTAGTGATTCTATCAATGATAGAGGTAAGATGCCACCAATGAAATGGTGGGTTGTCCATGGATCTAGTACACCAAATCTCCAAAGGTTAGCTTTAAAGCTACTAGGACAACCTTGTTCCTCCTCATGTTGTGAAAGAAATTGGAGCACCTACAAGTTTATTCACTCTTTGAGGAGGAATAGGATTACACCACAAAGAGCCGAAGATTTGGTGTTTGTGCATAATAATCTTCGGCTTTTATCAAGGAGAACTCCACAATACAAATGTGGAGAGATGTGGGATATTGGAGGGGATGATTTTGACTCAATGGATACGGTTAATGGAGGCATTCTTGAGGTTGCCAACCTCTCTCTTGATGAACCGGAATTGGAGGGTGTAATCTTTGATGATGAGGATGAAGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

201

Amino Acids

23.21

Weight (kDa)

5.12

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 62 - 143 4.5e-17 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 268
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 3 cut(s) 53, 290, 298
AluI AGCT 3 cut(s) 53, 290, 298
Alw21I GWGCWC 2 cut(s) 55, 347
AlwI GGATC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 2 cut(s) 55, 347
BciVI GTATCC 1 cut(s) 502
BfaI CTAG 2 cut(s) 264, 302
BfrI CTTAAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 502
BmsI GCATC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 3 cut(s) 193, 496, 598
BseRI GAGGAG 3 cut(s) 173, 310, 385
BsiHKAI GWGCWC 2 cut(s) 55, 347
BsiSI CCGG 1 cut(s) 560
BsmI GAATGC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 55, 347
Bsp143I GATC 1 cut(s) 260
Bsp19I CCATGG 1 cut(s) 256
BspPI GGATC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 3 cut(s) 193, 496, 598
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 1 cut(s) 260
BsuI GTATCC 1 cut(s) 502
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 3 cut(s) 193, 496, 598
Cac8I GCNNGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 267
CviAII CATG 5 cut(s) 34, 47, 180, 257, 324
CviJI RGCY 5 cut(s) 53, 290, 298, 398, 433
CviKI_1 RGCY 5 cut(s) 53, 290, 298, 398, 433
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
DraI TTTAAA 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 5 cut(s) 37, 50, 183, 260, 327
FaiI YATR 8 cut(s) 30, 35, 48, 126, 181, 258, 325, 420
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 274, 306
FatI CATG 5 cut(s) 33, 46, 179, 256, 323
FokI GGATG 2 cut(s) 200, 503
FriOI GRGCYC 1 cut(s) 55
FspBI CTAG 2 cut(s) 264, 302
HapII CCGG 1 cut(s) 560
Hin1II CATG 5 cut(s) 37, 50, 183, 260, 327
HinfI GANTC 3 cut(s) 16, 206, 500
HpaII CCGG 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 269
Hpy188III TCNNGA 3 cut(s) 77, 530, 551
Hpy8I GTNNAC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4V TGCA 2 cut(s) 197, 418
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 5 cut(s) 37, 50, 183, 260, 327
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 3 cut(s) 50, 58, 342
LpnPI CCDG 1 cut(s) 573
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 264, 302
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 5 cut(s) 35, 56, 146, 413, 419
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 55, 347
MluCI AATT 3 cut(s) 191, 337, 563
MlyI GAGTC 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 114, 293, 516
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 1 cut(s) 560
Mva1269I GAATGC 1 cut(s) 525
NcoI CCATGG 1 cut(s) 256
NdeII GATC 1 cut(s) 260
NlaIII CATG 5 cut(s) 37, 50, 183, 260, 327
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PctI GAATGC 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 16, 206
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 3 cut(s) 114, 293, 516
Sau3AI GATC 1 cut(s) 260
SchI GAGTC 1 cut(s) 494
SduI GDGCHC 2 cut(s) 55, 347
SetI ASST 9 cut(s) 55, 226, 287, 292, 300, 313, 350, 537, 546
SfaNI GCATC 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 113, 530
SmoI CTYRAG 2 cut(s) 113, 530
SphI GCATGC 1 cut(s) 183
Sse9I AATT 3 cut(s) 191, 337, 563
SspMI CTAG 2 cut(s) 264, 302
SstI GAGCTC 1 cut(s) 55
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 514
TasI AATT 3 cut(s) 191, 337, 563
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 16, 206
Tru1I TTAA 3 cut(s) 114, 293, 516
Tru9I TTAA 3 cut(s) 114, 293, 516
TspDTI ATGAA 5 cut(s) 35, 147, 204, 254, 570
Vha464I CTTAAG 1 cut(s) 113
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 2 cut(s) 240, 243
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 264, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.