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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 300, 399 |
| AccB1I | GGYRCC | 1 cut(s) | 852 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 340 |
| AccII | CGCG | 2 cut(s) | 11, 458 |
| AciI | CCGC | 4 cut(s) | 111, 308, 491, 1703 |
| AclWI | GGATC | 4 cut(s) | 399, 412, 461, 602 |
| AcsI | RAATTY | 3 cut(s) | 368, 736, 1280 |
| AcuI | CTGAAG | 1 cut(s) | 615 |
| AdeI | CACNNNGTG | 2 cut(s) | 1163, 1606 |
| AfaI | GTAC | 2 cut(s) | 1204, 1454 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 340, 414, 1444 |
| AflIII | ACRYGT | 3 cut(s) | 9, 550, 707 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 163 |
| AjnI | CCWGG | 2 cut(s) | 778, 793 |
| AleI | CACNNNNGTG | 1 cut(s) | 1379 |
| Alw21I | GWGCWC | 2 cut(s) | 884, 2105 |
| Alw26I | GTCTC | 7 cut(s) | 189, 211, 220, 925, 2039, 2327, 2349 |
| AlwI | GGATC | 4 cut(s) | 399, 412, 461, 602 |
| Ama87I | CYCGRG | 1 cut(s) | 666 |
| AoxI | GGCC | 3 cut(s) | 635, 968, 1131 |
| ApeKI | GCWGC | 4 cut(s) | 953, 1112, 1646, 1689 |
| ApoI | RAATTY | 3 cut(s) | 368, 736, 1280 |
| AseI | ATTAAT | 2 cut(s) | 942, 990 |
| AspLEI | GCGC | 3 cut(s) | 460, 873, 1668 |
| AspS9I | GGNCC | 4 cut(s) | 635, 968, 1132, 1272 |
| AsuHPI | GGTGA | 5 cut(s) | 236, 1013, 1498, 1651, 2285 |
| AvaI | CYCGRG | 1 cut(s) | 666 |
| AvaII | GGWCC | 1 cut(s) | 1272 |
| BamHI | GGATCC | 1 cut(s) | 404 |
| BanI | GGYRCC | 1 cut(s) | 852 |
| BbsI | GAAGAC | 2 cut(s) | 1589, 1815 |
| Bbv12I | GWGCWC | 2 cut(s) | 884, 2105 |
| BbvCI | CCTCAGC | 1 cut(s) | 2157 |
| BbvI | GCAGC | 4 cut(s) | 965, 1099, 1633, 1701 |
| BccI | CCATC | 2 cut(s) | 1477, 2249 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 720, 754 |
| BciT130I | CCWGG | 2 cut(s) | 780, 795 |
| BciVI | GTATCC | 1 cut(s) | 43 |
| BclI | TGATCA | 1 cut(s) | 1083 |
| BcoDI | GTCTC | 7 cut(s) | 189, 211, 220, 925, 2039, 2327, 2349 |
| BfaI | CTAG | 5 cut(s) | 414, 1260, 1815, 2031, 2060 |
| BfuI | GTATCC | 1 cut(s) | 43 |
| BisI | GCNGC | 4 cut(s) | 954, 1113, 1647, 1690 |
| BlsI | GCNGC | 4 cut(s) | 955, 1114, 1648, 1691 |
| Bme1390I | CCNGG | 2 cut(s) | 780, 795 |
| Bme18I | GGWCC | 1 cut(s) | 1272 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 163 |
| BmeT110I | CYCGRG | 1 cut(s) | 666 |
| BmgT120I | GGNCC | 4 cut(s) | 635, 968, 1132, 1272 |
| BmiI | GGNNCC | 4 cut(s) | 406, 854, 1802, 1992 |
| BmrFI | CCNGG | 2 cut(s) | 780, 795 |
| BmsI | GCATC | 7 cut(s) | 670, 910, 1255, 1374, 1612, 1690, 2280 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1815 |
| BpiI | GAAGAC | 2 cut(s) | 1589, 1815 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 526, 558, 802, 834, 1910, 1942 |
| BpmI | CTGGAG | 1 cut(s) | 2370 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2157 |
| BpuEI | CTTGAG | 1 cut(s) | 1000 |
| BsaI | GGTCTC | 1 cut(s) | 925 |
| BsaJI | CCNNGG | 3 cut(s) | 779, 1778, 2014 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2019, 2049 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 340, 414, 1444 |
| Bse1I | ACTGG | 2 cut(s) | 1994, 2353 |
| Bse3DI | GCAATG | 4 cut(s) | 1327, 1350, 1485, 1733 |
| BseBI | CCWGG | 2 cut(s) | 780, 795 |
| BseDI | CCNNGG | 3 cut(s) | 779, 1778, 2014 |
| BseGI | GGATG | 6 cut(s) | 286, 702, 1510, 1627, 2248, 2295 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 340, 414, 1444 |
| BseMI | GCAATG | 4 cut(s) | 1327, 1350, 1485, 1733 |
| BseMII | CTCAG | 4 cut(s) | 161, 655, 800, 2148 |
| BseNI | ACTGG | 2 cut(s) | 1994, 2353 |
| BseRI | GAGGAG | 5 cut(s) | 366, 369, 2068, 2265, 2367 |
| BseXI | GCAGC | 4 cut(s) | 965, 1099, 1633, 1701 |
| BseYI | CCCAGC | 1 cut(s) | 1115 |
| Bsh1236I | CGCG | 2 cut(s) | 11, 458 |
| BshFI | GGCC | 3 cut(s) | 637, 970, 1133 |
| BshNI | GGYRCC | 1 cut(s) | 852 |
| BsiHKAI | GWGCWC | 2 cut(s) | 884, 2105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 666 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 340, 414, 1444 |
| BsmAI | GTCTC | 7 cut(s) | 189, 211, 220, 925, 2039, 2327, 2349 |
| BsmBI | CGTCTC | 2 cut(s) | 189, 211 |
| BsnI | GGCC | 3 cut(s) | 637, 970, 1133 |
| Bso31I | GGTCTC | 1 cut(s) | 925 |
| BsoBI | CYCGRG | 1 cut(s) | 666 |
| Bsp1286I | GDGCHC | 2 cut(s) | 884, 2105 |
| Bsp1407I | TGTACA | 1 cut(s) | 1452 |
| Bsp143I | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| Bsp19I | CCATGG | 1 cut(s) | 2014 |
| BspACI | CCGC | 4 cut(s) | 111, 308, 491, 1703 |
| BspANI | GGCC | 3 cut(s) | 637, 970, 1133 |
| BspCNI | CTCAG | 4 cut(s) | 160, 654, 801, 2149 |
| BspFNI | CGCG | 2 cut(s) | 11, 458 |
| BspHI | TCATGA | 2 cut(s) | 1063, 2361 |
| BspLI | GGNNCC | 4 cut(s) | 406, 854, 1802, 1992 |
| BspPI | GGATC | 4 cut(s) | 399, 412, 461, 602 |
| BspT107I | GGYRCC | 1 cut(s) | 852 |
| BspTNI | GGTCTC | 1 cut(s) | 925 |
| BsrDI | GCAATG | 4 cut(s) | 1327, 1350, 1485, 1733 |
| BsrGI | TGTACA | 1 cut(s) | 1452 |
| BsrI | ACTGG | 2 cut(s) | 1994, 2353 |
| BssECI | CCNNGG | 3 cut(s) | 779, 1778, 2014 |
| BssMI | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| BssT1I | CCWWGG | 2 cut(s) | 1778, 2014 |
| Bst2UI | CCWGG | 2 cut(s) | 780, 795 |
| Bst4CI | ACNGT | 1 cut(s) | 2325 |
| Bst6I | CTCTTC | 5 cut(s) | 527, 611, 825, 830, 1187 |
| BstAUI | TGTACA | 1 cut(s) | 1452 |
| BstDEI | CTNAG | 5 cut(s) | 147, 641, 809, 1388, 2157 |
| BstDSI | CCRYGG | 1 cut(s) | 2014 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 412 |
| BstF5I | GGATG | 6 cut(s) | 286, 702, 1510, 1627, 2248, 2295 |
| BstFNI | CGCG | 2 cut(s) | 11, 458 |
| BstHHI | GCGC | 3 cut(s) | 460, 873, 1668 |
| BstKTI | GATC | 6 cut(s) | 407, 456, 589, 610, 673, 1086 |
| BstMAI | GTCTC | 7 cut(s) | 189, 211, 220, 925, 2039, 2327, 2349 |
| BstMBI | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 689, 879, 1265 |
| BstNI | CCWGG | 2 cut(s) | 780, 795 |
| BstNSI | RCATGY | 2 cut(s) | 554, 711 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1815 |
| BstSCI | CCNGG | 2 cut(s) | 778, 793 |
| BstUI | CGCG | 2 cut(s) | 11, 458 |
| BstV1I | GCAGC | 4 cut(s) | 965, 1099, 1633, 1701 |
| BstV2I | GAAGAC | 2 cut(s) | 1589, 1815 |
| BstX2I | RGATCY | 1 cut(s) | 404 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2001 |
| BstYI | RGATCY | 1 cut(s) | 404 |
| BsuI | GTATCC | 1 cut(s) | 43 |
| BsuRI | GGCC | 3 cut(s) | 637, 970, 1133 |
| BtgI | CCRYGG | 1 cut(s) | 2014 |
| BtsCI | GGATG | 6 cut(s) | 286, 702, 1510, 1627, 2248, 2295 |
| BtsI | GCAGTG | 1 cut(s) | 910 |
| BtsIMutI | CAGTG | 4 cut(s) | 806, 910, 1086, 2001 |
| CciI | TCATGA | 2 cut(s) | 1063, 2361 |
| CfoI | GCGC | 3 cut(s) | 460, 873, 1668 |
| Cfr13I | GGNCC | 4 cut(s) | 635, 968, 1132, 1272 |
| CsiI | ACCWGGT | 1 cut(s) | 793 |
| Csp6I | GTAC | 2 cut(s) | 1203, 1453 |
| CviQI | GTAC | 2 cut(s) | 1203, 1453 |
| DdeI | CTNAG | 5 cut(s) | 147, 641, 809, 1388, 2157 |
| DpnI | GATC | 6 cut(s) | 406, 455, 588, 609, 672, 1085 |
| DpnII | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| DraIII | CACNNNGTG | 2 cut(s) | 1163, 1606 |
| DriI | GACNNNNNGTC | 1 cut(s) | 163 |
| Eam1104I | CTCTTC | 5 cut(s) | 527, 611, 825, 830, 1187 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 163 |
| EarI | CTCTTC | 5 cut(s) | 527, 611, 825, 830, 1187 |
| Eco130I | CCWWGG | 2 cut(s) | 1778, 2014 |
| Eco31I | GGTCTC | 1 cut(s) | 925 |
| Eco47I | GGWCC | 1 cut(s) | 1272 |
| Eco57I | CTGAAG | 1 cut(s) | 615 |
| Eco88I | CYCGRG | 1 cut(s) | 666 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 412 |
| EcoRII | CCWGG | 2 cut(s) | 778, 793 |
| EcoT14I | CCWWGG | 2 cut(s) | 1778, 2014 |
| ErhI | CCWWGG | 2 cut(s) | 1778, 2014 |
| Esp3I | CGTCTC | 2 cut(s) | 189, 211 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 588, 620, 1354, 1386 |
| FauNDI | CATATG | 1 cut(s) | 757 |
| FbaI | TGATCA | 1 cut(s) | 1083 |
| Fnu4HI | GCNGC | 4 cut(s) | 954, 1113, 1647, 1690 |
| FokI | GGATG | 6 cut(s) | 293, 709, 1517, 1634, 2255, 2302 |
| Fsp4HI | GCNGC | 4 cut(s) | 954, 1113, 1647, 1690 |
| FspBI | CTAG | 5 cut(s) | 414, 1260, 1815, 2031, 2060 |
| GlaI | GCGC | 3 cut(s) | 459, 872, 1667 |
| GluI | GCNGC | 4 cut(s) | 954, 1113, 1647, 1690 |
| GsaI | CCCAGC | 1 cut(s) | 1119 |
| GsuI | CTGGAG | 1 cut(s) | 2370 |
| HaeIII | GGCC | 3 cut(s) | 637, 970, 1133 |
| HhaI | GCGC | 3 cut(s) | 460, 873, 1668 |
| Hin6I | GCGC | 3 cut(s) | 458, 871, 1666 |
| HinP1I | GCGC | 3 cut(s) | 458, 871, 1666 |
| HindIII | AAGCTT | 1 cut(s) | 648 |
| HinfI | GANTC | 5 cut(s) | 118, 241, 572, 838, 1964 |
| HphI | GGTGA | 5 cut(s) | 236, 1013, 1498, 1651, 2285 |
| Hpy166II | GTNNAC | 3 cut(s) | 915, 1171, 1418 |
| Hpy188I | TCNGA | 8 cut(s) | 49, 70, 81, 150, 157, 750, 1209, 1795 |
| Hpy8I | GTNNAC | 3 cut(s) | 915, 1171, 1418 |
| Hpy99I | CGWCG | 2 cut(s) | 184, 206 |
| HpyAV | CCTTC | 5 cut(s) | 992, 1393, 1406, 2124, 2216 |
| HpyCH4III | ACNGT | 1 cut(s) | 2325 |
| HpyCH4IV | ACGT | 1 cut(s) | 53 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 689, 879, 1265 |
| HpyF3I | CTNAG | 5 cut(s) | 147, 641, 809, 1388, 2157 |
| HpySE526I | ACGT | 1 cut(s) | 53 |
| HspAI | GCGC | 3 cut(s) | 458, 871, 1666 |
| Ksp22I | TGATCA | 1 cut(s) | 1083 |
| Kzo9I | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| Lsp1109I | GCAGC | 4 cut(s) | 965, 1099, 1633, 1701 |
| LweI | GCATC | 7 cut(s) | 670, 910, 1255, 1374, 1612, 1690, 2280 |
| MabI | ACCWGGT | 1 cut(s) | 793 |
| MaeI | CTAG | 5 cut(s) | 414, 1260, 1815, 2031, 2060 |
| MaeII | ACGT | 1 cut(s) | 53 |
| MaeIII | GTNAC | 6 cut(s) | 472, 797, 839, 1119, 1341, 2344 |
| MalI | GATC | 6 cut(s) | 406, 455, 588, 609, 672, 1085 |
| MboI | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| MfeI | CAATTG | 3 cut(s) | 1240, 1851, 2234 |
| MflI | RGATCY | 1 cut(s) | 404 |
| MhlI | GDGCHC | 2 cut(s) | 884, 2105 |
| MluI | ACGCGT | 1 cut(s) | 9 |
| MlyI | GAGTC | 1 cut(s) | 847 |
| MmeI | TCCRAC | 3 cut(s) | 216, 883, 2227 |
| MslI | CAYNNNNRTG | 5 cut(s) | 261, 1068, 1379, 1836, 2366 |
| MspA1I | CMGCKG | 1 cut(s) | 310 |
| MspR9I | CCNGG | 2 cut(s) | 780, 795 |
| MunI | CAATTG | 3 cut(s) | 1240, 1851, 2234 |
| MvaI | CCWGG | 2 cut(s) | 780, 795 |
| MvnI | CGCG | 2 cut(s) | 11, 458 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 689, 879, 1265 |
| NcoI | CCATGG | 1 cut(s) | 2014 |
| NdeI | CATATG | 1 cut(s) | 757 |
| NdeII | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| NlaIV | GGNNCC | 4 cut(s) | 406, 854, 1802, 1992 |
| NmuCI | GTSAC | 1 cut(s) | 839 |
| NspI | RCATGY | 2 cut(s) | 554, 711 |
| OliI | CACNNNNGTG | 1 cut(s) | 1379 |
| PaeR7I | CTCGAG | 1 cut(s) | 666 |
| PagI | TCATGA | 2 cut(s) | 1063, 2361 |
| PciI | ACATGT | 2 cut(s) | 550, 707 |
| PfeI | GAWTC | 4 cut(s) | 118, 241, 572, 1964 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 340 |
| PkrI | GCNGC | 4 cut(s) | 955, 1114, 1648, 1691 |
| PleI | GAGTC | 1 cut(s) | 846 |
| PpsI | GAGTC | 1 cut(s) | 846 |
| PscI | ACATGT | 2 cut(s) | 550, 707 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1815 |
| PshBI | ATTAAT | 2 cut(s) | 942, 990 |
| PsiI | TTATAA | 2 cut(s) | 300, 399 |
| Psp6I | CCWGG | 2 cut(s) | 778, 793 |
| PspFI | CCCAGC | 1 cut(s) | 1115 |
| PspGI | CCWGG | 2 cut(s) | 778, 793 |
| PspN4I | GGNNCC | 4 cut(s) | 406, 854, 1802, 1992 |
| PspPI | GGNCC | 4 cut(s) | 635, 968, 1132, 1272 |
| PsuI | RGATCY | 1 cut(s) | 404 |
| RsaI | GTAC | 2 cut(s) | 1204, 1454 |
| RsaNI | GTAC | 2 cut(s) | 1203, 1453 |
| RseI | CAYNNNNRTG | 5 cut(s) | 261, 1068, 1379, 1836, 2366 |
| SatI | GCNGC | 4 cut(s) | 954, 1113, 1647, 1690 |
| Sau3AI | GATC | 6 cut(s) | 404, 453, 586, 607, 670, 1083 |
| Sau96I | GGNCC | 4 cut(s) | 635, 968, 1132, 1272 |
| SchI | GAGTC | 1 cut(s) | 847 |
| ScrFI | CCNGG | 2 cut(s) | 780, 795 |
| SduI | GDGCHC | 2 cut(s) | 884, 2105 |
| SexAI | ACCWGGT | 1 cut(s) | 793 |
| SfaNI | GCATC | 7 cut(s) | 670, 910, 1255, 1374, 1612, 1690, 2280 |
| Sfr274I | CTCGAG | 1 cut(s) | 666 |
| SinI | GGWCC | 1 cut(s) | 1272 |
| SlaI | CTCGAG | 1 cut(s) | 666 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 261, 1068, 1379, 1836, 2366 |
| SmlI | CTYRAG | 2 cut(s) | 666, 979 |
| SmoI | CTYRAG | 2 cut(s) | 666, 979 |
| SsiI | CCGC | 4 cut(s) | 111, 308, 491, 1703 |
| SspI | AATATT | 1 cut(s) | 946 |
| SspMI | CTAG | 5 cut(s) | 414, 1260, 1815, 2031, 2060 |
| StyD4I | CCNGG | 2 cut(s) | 778, 793 |
| StyI | CCWWGG | 2 cut(s) | 1778, 2014 |
| TaaI | ACNGT | 1 cut(s) | 2325 |
| TaiI | ACGT | 1 cut(s) | 56 |
| TaqI | TCGA | 3 cut(s) | 24, 511, 667 |
| TatI | WGTACW | 2 cut(s) | 1202, 1452 |
| TfiI | GAWTC | 4 cut(s) | 118, 241, 572, 1964 |
| TscAI | CASTG | 4 cut(s) | 813, 910, 1093, 2001 |
| TseFI | GTSAC | 1 cut(s) | 839 |
| TseI | GCWGC | 4 cut(s) | 953, 1112, 1646, 1689 |
| Tsp45I | GTSAC | 1 cut(s) | 839 |
| TspGWI | ACGGA | 4 cut(s) | 168, 177, 190, 208 |
| TspRI | CASTG | 4 cut(s) | 813, 910, 1093, 2001 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 1272 |
| VspI | ATTAAT | 2 cut(s) | 942, 990 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 412 |
| XapI | RAATTY | 3 cut(s) | 368, 736, 1280 |
| XceI | RCATGY | 2 cut(s) | 554, 711 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2001 |
| XhoI | CTCGAG | 1 cut(s) | 666 |
| XspI | CTAG | 5 cut(s) | 414, 1260, 1815, 2031, 2060 |