FvH4_4g12491

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000421
Physical Location & Seq
Forward (+)
16170145 .. 16170570
426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12491.t1

Sequence Viewer

Length: 426 bp
ATGGATGATTATTCATCGGCCGAAGCTTTGGAGAATAAGTTTCATTTTGAGCCTTTAATTTGGTGGGTTGCCTATGGACCTTCTACACCATATTTGCAAAGTTTGGCTTTCAAGTTGTTTAATCAACCTTGCTCATCTTCTTGCTGCGAAAGAAATTGGAGCACATATAGTTTTATACAAGGTTTGAAGAGGAACAAGTTGCAACCAAAAAGAGCTCAAGATTTGGTTTATGTGCATACAAATCTTCGACTTTTAGCAAGAAAGGATTCTAACTATCACAAGGACAAAGACTCAATGTGGGATCTTGGAGGAGATGGTCATGAATCCATGGAACCCGCCAATATTGATGTGCTTGAGTTGGCAACTTTATCTCTTGATGAGCCGGCATTGGAGAGGATGCTAGTTGATTATGAGATGAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

142

Amino Acids

16.34

Weight (kDa)

5.14

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 2 - 82 2.9e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 18
AgsI TTSAA 2 cut(s) 112, 187
AluBI AGCT 2 cut(s) 26, 215
AluI AGCT 2 cut(s) 26, 215
Alw21I GWGCWC 2 cut(s) 164, 217
AlwI GGATC 1 cut(s) 309
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 164, 217
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 308
BfaI CTAG 1 cut(s) 401
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 201, 374
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse118I RCCGGY 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 10, 402
BseRI GAGGAG 1 cut(s) 324
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 164, 217
BsiSI CCGG 1 cut(s) 383
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 164, 217
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 20
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 10, 402
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMCI CGRYCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 10, 402
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 2 cut(s) 320, 328
CviJI RGCY 6 cut(s) 20, 26, 52, 107, 215, 382
CviKI_1 RGCY 6 cut(s) 20, 26, 52, 107, 215, 382
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 215
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 323, 331
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FatI CATG 2 cut(s) 319, 327
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 2 cut(s) 17, 409
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 401
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 383
Hin1II CATG 2 cut(s) 323, 331
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 266, 290, 323
HpaII CCGG 1 cut(s) 383
Hpy188III TCNNGA 4 cut(s) 218, 320, 374, 423
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 97, 202, 235
Hsp92II CATG 2 cut(s) 323, 331
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 1 cut(s) 396
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 387
MaeI CTAG 1 cut(s) 401
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 3 cut(s) 129, 199, 236
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 164, 217
MluCI AATT 2 cut(s) 57, 154
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 3 cut(s) 183, 302, 387
MroNI GCCGGC 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 2 cut(s) 56, 120
MspI CCGG 1 cut(s) 383
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 327
NdeII GATC 1 cut(s) 301
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 2 cut(s) 323, 331
NlaIV GGNNCC 1 cut(s) 333
PagI TCATGA 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 266, 323
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 301
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 56, 120
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 2 cut(s) 164, 217
SetI ASST 5 cut(s) 28, 82, 130, 184, 217
SfaNI GCATC 1 cut(s) 387
SinI GGWCC 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 216, 353
SmoI CTYRAG 2 cut(s) 216, 353
Sse9I AATT 2 cut(s) 57, 154
SsiI CCGC 1 cut(s) 336
SspI AATATT 1 cut(s) 343
SspMI CTAG 1 cut(s) 401
SstI GAGCTC 1 cut(s) 217
StyI CCWWGG 1 cut(s) 327
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 57, 154
TfiI GAWTC 2 cut(s) 266, 323
Tru1I TTAA 2 cut(s) 56, 120
Tru9I TTAA 2 cut(s) 56, 120
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 32, 336
VpaK11BI GGWCC 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.