pycom10g07270

hAT family C-terminal dimerisation region

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
8473993 .. 8474806
814 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07270.1

Sequence Viewer

Length: 612 bp
ATGAGCGCAAGGTATTATAGTTCAGAATGGCTCCAAGAAGACCCTAGTCGGGTTGCTCCACACCGAGATGTTGAGCTTACAACTGAAAGGAAAAAGTGCTTTGAGAGATACTTTTCCAATGAGGAAATTAGAAGAAGTATCAATGTGGAGTATGCCTCTTTCTCTATGTGCTTGAATGACTTTGGAGCTATTGATTCTATGAATGATAGGTTTCATTTGGAACCAGTGATGTGGTGGATTGTCCATGGAGCTTCTACACCTAGTCTCCAATCCATAGCGTTGAAGCTACTTGGACAACCTTGTTCCTCCTCTTGTTGTGAAAGAAATTGGAGCACTTATAGTTTTATTCACTCTCTAAGAAGGAACAAGATTACACCACAAAGAGCGGAGGATTTGGTATTTGTGCATAATAATCTTCGTCTTTTATCAAGGAATAGCTCAACCTACAAAGAAGGTATTACTCAATTGTGGGATGTTGGAGGAGATGGCTTTGAAAACTTGGGTGAAGAAAGTGTCGGGATGCTTGATATTGCTAACCTTTCACTTGATGAACCGTCATTGGAGACTACTTTGATTACTGGAGGAGACATCATGAACGTGGAAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

23.23

Weight (kDa)

4.93

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 70 - 139 4.7e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 386
AciI CCGC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 4 cut(s) 175, 283, 494, 608
AluBI AGCT 5 cut(s) 76, 188, 251, 286, 438
AluI AGCT 5 cut(s) 76, 188, 251, 286, 438
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 3 cut(s) 269, 557, 579
AspLEI GCGC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 335
BccI CCATC 1 cut(s) 479
BcoDI GTCTC 3 cut(s) 269, 557, 579
BfaI CTAG 2 cut(s) 45, 261
BmiI GGNNCC 2 cut(s) 32, 222
BmsI GCATC 1 cut(s) 510
BoxI GACNNNNGTC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 600
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 224, 583
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 478, 525
BseLI CCNNNNNNNGG 1 cut(s) 49
BseNI ACTGG 2 cut(s) 224, 583
BseRI GAGGAG 3 cut(s) 298, 495, 597
BsiHKAI GWGCWC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 3 cut(s) 269, 557, 579
Bsp1286I GDGCHC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 386
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 32, 222
BsrBI CCGCTC 1 cut(s) 386
BsrI ACTGG 2 cut(s) 224, 583
BssECI CCNNGG 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 555
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 478, 525
BstHHI GCGC 1 cut(s) 8
BstMAI GTCTC 3 cut(s) 269, 557, 579
BstPAI GACNNNNGTC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 478, 525
BtsIMutI CAGTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 591
CfoI GCGC 1 cut(s) 8
CviAII CATG 2 cut(s) 245, 592
CviJI RGCY 7 cut(s) 31, 76, 188, 251, 286, 438, 489
CviKI_1 RGCY 7 cut(s) 31, 76, 188, 251, 286, 438, 489
DdeI CTNAG 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 248, 595
FaiI YATR 9 cut(s) 18, 153, 167, 200, 246, 275, 339, 408, 593
FatI CATG 2 cut(s) 244, 591
FokI GGATG 2 cut(s) 485, 532
FspBI CTAG 2 cut(s) 45, 261
GlaI GCGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 600
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 248, 595
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 515
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 517, 592
HpyAV CCTTC 2 cut(s) 354, 446
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 1 cut(s) 406
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 2 cut(s) 248, 595
HspAI GCGC 1 cut(s) 6
LmnI GCTCC 5 cut(s) 36, 61, 185, 248, 330
LpnPI CCDG 2 cut(s) 237, 564
LweI GCATC 1 cut(s) 510
MaeI CTAG 2 cut(s) 45, 261
MaeII ACGT 1 cut(s) 597
MbiI CCGCTC 1 cut(s) 386
MboII GAAGA 4 cut(s) 50, 144, 407, 518
MfeI CAATTG 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 3 cut(s) 126, 325, 464
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 7 cut(s) 115, 166, 316, 319, 382, 473, 575
MslI CAYNNNNRTG 2 cut(s) 66, 596
MunI CAATTG 1 cut(s) 464
NcoI CCATGG 1 cut(s) 244
NlaIII CATG 2 cut(s) 248, 595
NlaIV GGNNCC 2 cut(s) 32, 222
PagI TCATGA 1 cut(s) 591
PfeI GAWTC 1 cut(s) 194
PshAI GACNNNNGTC 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 32, 222
RseI CAYNNNNRTG 2 cut(s) 66, 596
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 66, 596
Sse9I AATT 3 cut(s) 126, 325, 464
SsiI CCGC 1 cut(s) 386
SspMI CTAG 2 cut(s) 45, 261
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 555
TaiI ACGT 1 cut(s) 600
TasI AATT 3 cut(s) 126, 325, 464
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 1 cut(s) 231
TspDTI ATGAA 4 cut(s) 203, 215, 564, 608
TspRI CASTG 1 cut(s) 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XspI CTAG 2 cut(s) 45, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.