Rmu_sc0008164.1_g000005

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008164.1
OG0000421
Physical Location & Seq
Forward (+)
18805 .. 19173
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008164.1_g000005.1.cds

Sequence Viewer

Length: 369 bp
atgagtgatggaggaacacctcctattagttctagtgccgggcctgttaatgccggtactagtagtggagctactgatgctgaaaatgatatcataaatgataaagcaccgttgtggaaatttgtgacgaagattcaaaaacagaaaggtcgaggaggttggaagtggcagtgcaatttctacaaattgtactacagcggctcttatactagagttcgtagtcatttattgaaagaaggaacagcgggggtggcaatttgcaccaaggttactcctcatgcctttactgcaatgaccaagttggcgagagaatccaaggagagattaataaatgcagctcctagacatgttcctctaccatcagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

122

Amino Acids

13.25

Weight (kDa)

9.74

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 245
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 58, 191
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 2 cut(s) 137, 232
AhlI ACTAGT 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 2 cut(s) 71, 338
AluI AGCT 2 cut(s) 71, 338
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 119
AseI ATTAAT 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 347
BccI CCATC 2 cut(s) 2, 367
BcnI CCSGG 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 4 cut(s) 33, 60, 210, 342
BfmI CTRYAG 1 cut(s) 193
BisI GCNGC 2 cut(s) 199, 336
BlsI GCNGC 2 cut(s) 200, 337
Bme1390I CCNGG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 264, 315
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 264, 315
BseMI GCAATG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 168, 264
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 39, 54
BsnI GGCC 1 cut(s) 43
BspACI CCGC 2 cut(s) 198, 245
BspANI GGCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 264, 315
BssT1I CCWWGG 2 cut(s) 264, 315
Bst4CI ACNGT 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 77, 251, 287
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 57, 190
CviAII CATG 2 cut(s) 278, 347
CviJI RGCY 4 cut(s) 43, 71, 201, 338
CviKI_1 RGCY 4 cut(s) 43, 71, 201, 338
CviQI GTAC 2 cut(s) 57, 190
Eco130I CCWWGG 2 cut(s) 264, 315
Eco32I GATATC 1 cut(s) 91
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 264, 315
ErhI CCWWGG 2 cut(s) 264, 315
FaeI CATG 2 cut(s) 281, 350
FaiI YATR 4 cut(s) 95, 207, 279, 348
FatI CATG 2 cut(s) 277, 346
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 199, 336
Fsp4HI GCNGC 2 cut(s) 199, 336
FspBI CTAG 4 cut(s) 33, 60, 210, 342
GluI GCNGC 2 cut(s) 199, 336
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 39, 54
Hin1II CATG 2 cut(s) 281, 350
HinfI GANTC 2 cut(s) 133, 311
HpaII CCGG 2 cut(s) 39, 54
Hpy188I TCNGA 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 174, 261, 290, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 251, 287
Hsp92II CATG 2 cut(s) 281, 350
LmnI GCTCC 2 cut(s) 68, 343
LpnPI CCDG 3 cut(s) 52, 57, 67
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 67
MaeI CTAG 4 cut(s) 33, 60, 210, 342
MaeIII GTNAC 2 cut(s) 124, 268
MboII GAAGA 1 cut(s) 142
MluCI AATT 4 cut(s) 119, 175, 185, 255
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 6 cut(s) 5, 30, 146, 149, 285, 363
MseI TTAA 2 cut(s) 48, 326
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 2 cut(s) 198, 245
MspI CCGG 2 cut(s) 39, 54
MspR9I CCNGG 1 cut(s) 40
MwoI GCNNNNNNNGC 3 cut(s) 77, 251, 287
NciI CCSGG 1 cut(s) 40
NlaIII CATG 2 cut(s) 281, 350
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 350
OliI CACNNNNGTG 1 cut(s) 112
PciI ACATGT 1 cut(s) 346
PfeI GAWTC 2 cut(s) 133, 311
PkrI GCNGC 2 cut(s) 200, 337
PscI ACATGT 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 326
PspPI GGNCC 1 cut(s) 41
RsaI GTAC 2 cut(s) 58, 191
RsaNI GTAC 2 cut(s) 57, 190
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 48, 326
SatI GCNGC 2 cut(s) 199, 336
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 40
SetI ASST 6 cut(s) 22, 73, 151, 160, 270, 340
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 4 cut(s) 119, 175, 185, 255
SsiI CCGC 2 cut(s) 198, 245
SspMI CTAG 4 cut(s) 33, 60, 210, 342
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 2 cut(s) 264, 315
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 151
TasI AATT 4 cut(s) 119, 175, 185, 255
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 133, 311
Tru1I TTAA 2 cut(s) 48, 326
Tru9I TTAA 2 cut(s) 48, 326
TscAI CASTG 1 cut(s) 176
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 1 cut(s) 176
VspI ATTAAT 1 cut(s) 326
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 350
XspI CTAG 4 cut(s) 33, 60, 210, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.