Rmu_sc0002077.1_g000008

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002077.1
OG0000421
Physical Location & Seq
Reverse (-)
28085 .. 28429
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002077.1_g000008.1.cds

Sequence Viewer

Length: 345 bp
atgagtgatggaggaacacctcctattagttctagtgccgggtctgttaatgccggtactagtagtggagctggtgatgctgaaaatgagatcatagatgataaagcaccgttgtggaaatttgtgaagaagattcaaaaacggcaaggtggaggaggttggaagtggcagtgcaatttctgcaaattgtactacagcgactcttatactagagttcgtagtcatttattgaaagaaggaacagcgggggtggcaatttgcaccaaggttactcctcatgcctttattgcaatgaccaagttggcgagagaatccaaggagagattaatgaatgctgctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659

Protein Analysis

114

Amino Acids

12.28

Weight (kDa)

9.41

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 58, 191
AgsI TTSAA 2 cut(s) 137, 232
AhlI ACTAGT 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 119
AseI ATTAAT 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 86
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 2
BceAI ACGGC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 3 cut(s) 33, 60, 210
BfmI CTRYAG 1 cut(s) 193
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 264, 315
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 264, 315
BseMI GCAATG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 168, 264
BseXI GCAGC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 39, 54
BsmI GAATGC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 264, 315
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 264, 315
Bst4CI ACNGT 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 77, 180, 251, 287
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 53
Csp6I GTAC 2 cut(s) 57, 190
CviAII CATG 1 cut(s) 278
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 2 cut(s) 57, 190
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 264, 315
EcoT14I CCWWGG 2 cut(s) 264, 315
ErhI CCWWGG 2 cut(s) 264, 315
FaeI CATG 1 cut(s) 281
FaiI YATR 3 cut(s) 95, 207, 279
FatI CATG 1 cut(s) 277
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 3 cut(s) 33, 60, 210
GluI GCNGC 1 cut(s) 336
HapII CCGG 2 cut(s) 39, 54
Hin1II CATG 1 cut(s) 281
HinfI GANTC 3 cut(s) 133, 200, 311
HpaII CCGG 2 cut(s) 39, 54
HphI GGTGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 174, 183, 261, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 180, 251, 287
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 68, 343
LpnPI CCDG 3 cut(s) 52, 57, 67
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 67
MaeI CTAG 3 cut(s) 33, 60, 210
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 139, 142
MluCI AATT 4 cut(s) 119, 175, 185, 255
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 5 cut(s) 5, 30, 146, 149, 285
MseI TTAA 2 cut(s) 48, 326
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 39, 54
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 77, 180, 251, 287
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 281
OliI CACNNNNGTG 1 cut(s) 112
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 133, 311
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 326
RsaI GTAC 2 cut(s) 58, 191
RsaNI GTAC 2 cut(s) 57, 190
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 48, 326
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 40
SetI ASST 5 cut(s) 22, 73, 151, 160, 270
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 4 cut(s) 119, 175, 185, 255
SsiI CCGC 1 cut(s) 245
SspMI CTAG 3 cut(s) 33, 60, 210
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 2 cut(s) 264, 315
TaaI ACNGT 1 cut(s) 111
TasI AATT 4 cut(s) 119, 175, 185, 255
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 133, 311
Tru1I TTAA 2 cut(s) 48, 326
Tru9I TTAA 2 cut(s) 48, 326
TscAI CASTG 1 cut(s) 176
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 1 cut(s) 176
VspI ATTAAT 1 cut(s) 326
XapI RAATTY 1 cut(s) 119
XspI CTAG 3 cut(s) 33, 60, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.