Rmu_sc0000493.1_g000034

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000493.1
OG0000421
Physical Location & Seq
Forward (+)
175643 .. 176338
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000493.1_g000034.1.cds

Sequence Viewer

Length: 468 bp
atggtcatcagtccaaagtgggatgattacaaagaagatgatgttaggaaggcagcttctgtgaaggaaaaattattagatgagttgctatgggatgacattcattacatcatttcttttactgagcctatctatgagatgatcaggagagcagacactgataggccttctcttcatttggtgtattatagttcggaatggcttagtgaagatactaatcgtgttgctccccacaaagatttagagattacaagggagaagaaaaattgtatccttagatactttgccaatgaagatgatcgaaggaaagttaacatagaatttgccaatttttccatgtgcatgcaagagtttggaagtggagatgctatgaaggatatgtttattatgcagcctataacatggtgggctgtccatggagcttcggcaccatctctccaagccatagccttcaaggttctaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

155

Amino Acids

18.2

Weight (kDa)

5.1

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AcsI RAATTY 1 cut(s) 320
AgsI TTSAA 1 cut(s) 454
AluBI AGCT 2 cut(s) 56, 422
AluI AGCT 2 cut(s) 56, 422
AlwNI CAGNNNCTG 2 cut(s) 59, 158
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 53, 391
ApoI RAATTY 1 cut(s) 320
BanI GGYRCC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 65, 403
BccI CCATC 1 cut(s) 439
BciVI GTATCC 1 cut(s) 281
BclI TGATCA 1 cut(s) 141
BfaI CTAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 2 cut(s) 54, 392
BlsI GCNGC 2 cut(s) 55, 393
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 28, 100
BseJI GATNNNNATC 1 cut(s) 216
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 65, 403
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 427
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 141, 298
Bsp19I CCATGG 1 cut(s) 415
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 2 cut(s) 141, 298
BssT1I CCWWGG 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 123, 203, 275
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 2 cut(s) 28, 100
BstKTI GATC 2 cut(s) 144, 301
BstMBI GATC 2 cut(s) 141, 298
BstNSI RCATGY 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 65, 403
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 415
BtsCI GGATG 2 cut(s) 28, 100
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 344
CaiI CAGNNNCTG 2 cut(s) 59, 158
CviAII CATG 4 cut(s) 337, 343, 402, 416
CviJI RGCY 9 cut(s) 56, 127, 166, 202, 394, 410, 422, 443, 449
CviKI_1 RGCY 9 cut(s) 56, 127, 166, 202, 394, 410, 422, 443, 449
DdeI CTNAG 3 cut(s) 123, 203, 275
DpnI GATC 2 cut(s) 143, 300
DpnII GATC 2 cut(s) 141, 298
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 4 cut(s) 340, 346, 405, 419
FatI CATG 4 cut(s) 336, 342, 401, 415
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 54, 392
FokI GGATG 2 cut(s) 35, 107
Fsp4HI GCNGC 2 cut(s) 54, 392
FspBI CTAG 1 cut(s) 461
GluI GCNGC 2 cut(s) 54, 392
HaeIII GGCC 1 cut(s) 166
Hin1II CATG 4 cut(s) 340, 346, 405, 419
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HpaI GTTAAC 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 6 cut(s) 43, 58, 177, 297, 367, 460
HpyCH4V TGCA 3 cut(s) 342, 346, 391
HpyF3I CTNAG 3 cut(s) 123, 203, 275
Hsp92II CATG 4 cut(s) 340, 346, 405, 419
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 141, 298
LmnI GCTCC 2 cut(s) 232, 419
LpnPI CCDG 1 cut(s) 130
Lsp1109I GCAGC 2 cut(s) 65, 403
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 461
MalI GATC 2 cut(s) 143, 300
MboI GATC 2 cut(s) 141, 298
MboII GAAGA 5 cut(s) 47, 164, 221, 271, 305
MluCI AATT 4 cut(s) 71, 265, 320, 328
MseI TTAA 2 cut(s) 312, 466
MslI CAYNNNNRTG 1 cut(s) 341
NcoI CCATGG 1 cut(s) 415
NdeII GATC 2 cut(s) 141, 298
NlaIII CATG 4 cut(s) 340, 346, 405, 419
NlaIV GGNNCC 1 cut(s) 429
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 166
PkrI GCNGC 2 cut(s) 55, 393
PspN4I GGNNCC 1 cut(s) 429
PstNI CAGNNNCTG 2 cut(s) 59, 158
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 312, 466
SatI GCNGC 2 cut(s) 54, 392
Sau3AI GATC 2 cut(s) 141, 298
SetI ASST 4 cut(s) 58, 424, 459, 466
SfaNI GCATC 1 cut(s) 355
SgeI CNNG 9 cut(s) 157, 233, 264, 349, 355, 359, 414, 428, 452
SmiMI CAYNNNNRTG 1 cut(s) 341
SphI GCATGC 1 cut(s) 346
Sse9I AATT 4 cut(s) 71, 265, 320, 328
SseBI AGGCCT 1 cut(s) 166
SspMI CTAG 1 cut(s) 461
StuI AGGCCT 1 cut(s) 166
StyI CCWWGG 1 cut(s) 415
TaqI TCGA 1 cut(s) 301
TasI AATT 4 cut(s) 71, 265, 320, 328
Tru1I TTAA 2 cut(s) 312, 466
Tru9I TTAA 2 cut(s) 312, 466
TscAI CASTG 1 cut(s) 163
TseI GCWGC 2 cut(s) 53, 391
TspDTI ATGAA 4 cut(s) 92, 164, 306, 386
TspRI CASTG 1 cut(s) 163
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 346
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.