Rh5BG136400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000421
Physical Location & Seq
Forward (+)
13601806 .. 13602920
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG136400.1

Sequence Viewer

Length: 270 bp
ATGGGACGATGGGTTGAAGCTCGGTGGGTTGAAGGGTTGAAGCTTGAAGAGTTGAAGACCAGGAAGATGAGTGATGCAAATGTAACAGCAATAGATTCATCTACTAATGAGGGTGAACCCAGTGGAGGTGTGGGAGATAATAATAAGCTTGCTTTCTTTCCTTGTGGGTGTCCTTATCATATCCACCTGTTGGTGGAGATGGTGAAGTTGGCCTCTGAGGTTCAAGGGAGTGAGGCGAAAGGGTGCCTGCTGCGTTGGGTGCATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

5.87

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08267
fragaria_vesca FvH4_2g14331 FvH4_2g16371 FvH4_2g26163 FvH4_3g42540 FvH4_4g02102 FvH4_4g12491 FvH4_4g35171 FvH4_5g06632 FvH4_5g06632 FvH4_5g06632 FvH4_5g08811 FvH4_5g08812 FvH4_5g23531 FvH4_6g10272 FvH4_6g40844 FvH4_7g16803 FvH4_7g16804
malus_domestica MD11G1099500.v1.1 MD17G1176800.v1.1
pyrus_communis pycom05g07840 pycom06g08730 pycom07g12010 pycom07g12020 pycom10g07270 pycom11g17470 pycom12g10610 pycom12g14240 pycom13g22040 pycom15g02440
rosa_chinensis RchiOBHm_Chr1g0371321 RchiOBHm_Chr2g0102701 RchiOBHm_Chr3g0465681 RchiOBHm_Chr4g0420941 RchiOBHm_Chr4g0434271 RchiOBHm_Chr4g0442721 RchiOBHm_Chr6g0262081 RchiOBHm_Chr6g0278171 RchiOBHm_Chr6g0294991 RchiOBHm_Chr6g0295001 RchiOBHm_Chr7g0205361 RchiOBHm_Chr7g0205371 RchiOBHm_Chr7g0223471
rosa_laevigata RLG00000005266
rosa_multiflora Rmu_sc0000493.1_g000033 Rmu_sc0000493.1_g000034 Rmu_sc0000507.1_g000007 Rmu_sc0000843.1_g000001 Rmu_sc0001075.1_g000033 Rmu_sc0002077.1_g000007 Rmu_sc0002077.1_g000008 Rmu_sc0002329.1_g000029 Rmu_sc0002539.1_g000077 Rmu_sc0002655.1_g000006 Rmu_sc0003127.1_g000020 Rmu_sc0003765.1_g000054 Rmu_sc0004368.1_g000023 Rmu_sc0004753.1_g000022 Rmu_sc0005297.1_g000014 Rmu_sc0007633.1_g000010 Rmu_sc0008164.1_g000005 Rmu_sc0008191.1_g000003 Rmu_sc0017900.1_g000005 Rmu_sc0022727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079920 Rroxscaffold_3G00255890 Rroxscaffold_4G00295340 Rroxscaffold_4G00296360 Rroxscaffold_4G00299640 Rroxscaffold_6G00388210
rosa_rugosa Rorug02G0466700 Rorug04G0123200 Rorug05G0074800 Rorug07G0202900
rosa_samantha Rh1DG134700 Rh3CG159000 Rh4AG331000 Rh5AG521100 Rh5BG136400 Rh5DG127300 Rh5DG383100 Rh5DG386100 Rh5DG458000 Rh6CG450400 Rh7CG233800 Rh7DG407100
rosa_wichuraiana Rw1G004960 Rw1G005730 Rw1G006360 Rw1G017400 Rw2G013190 Rw2G022210 Rw2G029640 Rw5G020910 Rw5G036930 Rw6G016200 Rw7G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 190
AfiI CCNNNNNNNGG 3 cut(s) 125, 190, 193
AgsI TTSAA 6 cut(s) 17, 32, 40, 47, 55, 224
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 3 cut(s) 20, 43, 148
AluI AGCT 3 cut(s) 20, 43, 148
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 125, 214
BanI GGYRCC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 3, 193
BciT130I CCWGG 1 cut(s) 61
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 190, 193
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 125, 190, 193
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 125, 190, 193
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 212
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 150, 248
BstDEI CTNAG 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 150, 248
CviJI RGCY 4 cut(s) 20, 43, 148, 212
CviKI_1 RGCY 4 cut(s) 20, 43, 148, 212
DdeI CTNAG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 59
FaiI YATR 3 cut(s) 180, 264, 266
FaqI GGGAC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 212
HindIII AAGCTT 2 cut(s) 41, 146
HinfI GANTC 1 cut(s) 95
HphI GGTGA 2 cut(s) 125, 214
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 77, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 216
LpnPI CCDG 5 cut(s) 46, 73, 133, 200, 260
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 3 cut(s) 59, 67, 76
MnlI CCTC 5 cut(s) 103, 119, 211, 223, 226
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeI CATATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 245
SatI GCNGC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 61
SetI ASST 6 cut(s) 22, 45, 130, 150, 189, 222
SfaNI GCATC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 59
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.