MD10G1117200.v1.1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000376
Physical Location & Seq
Forward (+)
19501118 .. 19504162
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1117200.v1.1.491

Sequence Viewer

Length: 2004 bp
ATGGCCGGCTCCGAAGCCACCCCTAAAGCGCAACGATCAAAGAACAAAAAGAGAAAGCAGAGGAGTCTTGGAGCGCTCCCAAGACCTTCCAAAACGCAGCGTATTAATCTCTCAGAGAAAGAGACTGAACCGCAAGACATGATGGAAGTTAAAGGAGCTGAAAAACACGAGCTGAGAGAACCCAGTCACGATCTCGAAGAAGCTGGTCCATGGCGGAACCTGGAGTTGGTTTTGTCAATCCAGAACAAAGAAATTGATCTTCAGAAGAAGGTGGAACTAGCTTATGGTTTAGTGATATCGAGCGTAAAAGAAGAAGGCGGCAAGAGTGACCAGGATAATCAAGCAGTGAATATGTCACGTTTAATAATTTTTGTCAATGATTGGATCCAATCATTGTTGATTTCTTCAGGAAAGAAAATTCAGAGTGTTGGAGTGAAGCATCAAGCCGAAGTTAATGACACAAATTTGGATATTAGGTGCTGGGAAATTTTCAAATTCTGCTTGGAGGAGTCTTTGAAATTGAATGTTTCTCTAAATTTCTCACGGAACCTTGTACGCTCTATTGATTTGATAGCTAGAAATGCACTGTCCTTATTGAACAAAACATCTTCACGCCCGACTTTGTCTTTCAGTAGTGAAGAGTTGCAATTGTACAATACTGTGCTTGATTGCATATCTTTGGTATTTGCATCCCATGGAGGCATGTCAGATGAAAATTTAGATCTGTGGGTTTCAACTGTAGGTGCAGTGCTTGATTTACTCCACAAATTTTACGTTGAAAATCTTGTTTGTGGCAATGGAGGTGACTTTGTTTTCCGATTTTTGTGCTTGGTGCTTGAGCCATTTGCCAAGTTTTTGAGGGCTCACCCAGCTTGGAAGAACGGGTTTCGTGATTTTATAGATAAACTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTTCAGATTGATGAAAGTAATCCTGGTTGGACAAGGAGCTTACTGAAGCTAGTTGAAGAAGTCCTATCTCATGGGCTATATCACCCAATCCACATTGATGGATTTTTGAGCTTGTGCAGTAGTGAAAAATATGCCACATCCAATTCTGGGAAGTCACAGGACTCCAAAACAACGCTCAAGAGTTATCACAGACATCTATTTGTAAACTGGAAAGAATGCTTTGGCAGTGGAAAGCATAGGAGAACTATTTCTCTTGCTCATCGATCAAAGGACACATCTGAGGGAGCTTGCCTTAATTTCTTGAAGAAGGTTTATAATATGATTATATCATTGTCCTCCAATTTAATTCAGTCATCGAAACATGATATTGTTAACGGGACACGAGTGGAAACTTTAACTTTAATAACCAATGAGGTGCTTTCTGCTGTGGGGTACCTATTGGAAATTGAATATGAGGTTATAGAGAAGGATTTGGTAAGCATGTGGCTTCTGATGCTTTCTCACTTAGCTGTTGGGCTTTCTCTGATGGATGCTCCGGATCAGTGCTCCTTATCTTTCAAGATAACTGATATTGGATGCCAATTTGTTGTTCTCTATAGTCAACTTCGCCAGGTGAATAATACTATTTTTGCATTGTGTAAAGCAATAAGGCTTCTAAGTTCACATAATGGTGATGGTGAACGGAACTATACTAGATTTGTGATTTCTTTACACGGTGAAGCTCATGCAAAATCAGTGGAAATGTTATTATGCTCACAAGAGTTTAAGATTGCAATCCAACAAGCTGTTAAGTCCATACCAGAAGGACAAGCAAGTGGGTGTATTGGTCGGTTAACAATGGATGTATCAGAATGTCTAGAGTGGATGAAAATTAGTTGTTCAAAATCTGATGAAACAGAAGTTGGCAGACAGGATGTGCAAAGTAGCGTGCAGGGTTTTAATCTGGAAGCTGAGCTTTTGGGGAGAGTGTTGTCTGAAATATATGCACTAGTGCTAGACTCACTGTTTGCCACAACTGGAAACTGTAACCTCCTTGGAGTTTCTAAAAGGACCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

668

Amino Acids

74.77

Weight (kDa)

6.49

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1260, 2002
Acc65I GGTACC 1 cut(s) 1377
AccB1I GGYRCC 1 cut(s) 1377
AccIII TCCGGA 1 cut(s) 1480
AciI CCGC 3 cut(s) 131, 214, 318
AclWI GGATC 3 cut(s) 379, 392, 1491
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 7 cut(s) 417, 463, 486, 494, 535, 715, 767
AcuI CTGAAG 4 cut(s) 245, 390, 932, 1010
AfaI GTAC 3 cut(s) 555, 653, 1379
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 226, 1092
AhlI ACTAGT 1 cut(s) 1933
AjnI CCWGG 4 cut(s) 219, 330, 967, 1554
AjuI GAANNNNNNNTTGG 6 cut(s) 209, 241, 1518, 1550, 1830, 1862
Alw21I GWGCWC 1 cut(s) 1493
Alw26I GTCTC 2 cut(s) 116, 941
AlwI GGATC 3 cut(s) 379, 392, 1491
Aor13HI TCCGGA 1 cut(s) 1480
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 7 cut(s) 417, 463, 486, 494, 535, 715, 767
ArsI GACNNNNNNTTYG 2 cut(s) 1934, 1966
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 1192
Asp718I GGTACC 1 cut(s) 1377
AspLEI GCGC 2 cut(s) 31, 76
AspS9I GGNCC 2 cut(s) 206, 1995
AsuHPI GGTGA 7 cut(s) 815, 857, 1019, 1570, 1628, 1634, 1673
AvaII GGWCC 2 cut(s) 206, 1995
BamHI GGATCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 1377
BanII GRGCYC 1 cut(s) 865
BauI CACGAG 2 cut(s) 167, 1326
Bbv12I GWGCWC 1 cut(s) 1493
BbvI GCAGC 1 cut(s) 109
BccI CCATC 4 cut(s) 136, 1037, 1465, 1613
BcgI CGANNNNNNTGC 2 cut(s) 807, 841
BciT130I CCWGG 4 cut(s) 221, 332, 969, 1556
BcoDI GTCTC 2 cut(s) 116, 941
BcuI ACTAGT 1 cut(s) 1933
BfaI CTAG 7 cut(s) 278, 576, 995, 1638, 1802, 1934, 1940
BfmI CTRYAG 2 cut(s) 738, 1540
BfoI RGCGCY 1 cut(s) 77
BglII AGATCT 1 cut(s) 721
BisI GCNGC 2 cut(s) 98, 319
BlpI GCTNAGC 1 cut(s) 1896
BlsI GCNGC 2 cut(s) 99, 320
Bme1390I CCNGG 4 cut(s) 221, 332, 969, 1556
Bme18I GGWCC 2 cut(s) 206, 1995
BmgT120I GGNCC 2 cut(s) 206, 1995
BmiI GGNNCC 5 cut(s) 10, 218, 386, 548, 1379
BmrFI CCNGG 4 cut(s) 221, 332, 969, 1556
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 7 cut(s) 448, 698, 934, 952, 1428, 1465, 1511
BmuI ACTGGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 242
Bpu1102I GCTNAGC 1 cut(s) 1896
BpuEI CTTGAG 3 cut(s) 857, 932, 1106
Bsa29I ATCGAT 1 cut(s) 1207
BsaBI GATNNNNATC 1 cut(s) 1718
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 3 cut(s) 209, 694, 1978
BsaWI WCCGGW 1 cut(s) 1480
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 1092
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 183, 1157, 1966
Bse3DI GCAATG 1 cut(s) 802
Bse8I GATNNNNATC 1 cut(s) 1718
BseAI TCCGGA 1 cut(s) 1480
BseBI CCWGG 4 cut(s) 221, 332, 969, 1556
BseCI ATCGAT 1 cut(s) 1207
BseDI CCNNGG 3 cut(s) 209, 694, 1978
BseGI GGATG 7 cut(s) 689, 1082, 1480, 1526, 1792, 1815, 1864
BseJI GATNNNNATC 1 cut(s) 1718
BseLI CCNNNNNNNGG 2 cut(s) 226, 1092
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 4 cut(s) 126, 164, 1215, 1887
BseNI ACTGG 3 cut(s) 183, 1157, 1966
BseRI GAGGAG 2 cut(s) 76, 521
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 2 cut(s) 480, 868
BsgI GTGCAG 3 cut(s) 765, 1081, 1895
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 1377
BshVI ATCGAT 1 cut(s) 1207
BsiHKAI GWGCWC 1 cut(s) 1493
BsiSI CCGG 2 cut(s) 6, 1481
BslFI GGGAC 1 cut(s) 1336
BslI CCNNNNNNNGG 2 cut(s) 226, 1092
BsmAI GTCTC 2 cut(s) 116, 941
BsmFI GGGAC 1 cut(s) 1336
BsmI GAATGC 1 cut(s) 1166
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 941
Bsp1286I GDGCHC 2 cut(s) 865, 1493
Bsp13I TCCGGA 1 cut(s) 1480
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
Bsp1720I GCTNAGC 1 cut(s) 1896
Bsp19I CCATGG 2 cut(s) 209, 694
BspACI CCGC 3 cut(s) 131, 214, 318
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 125, 165, 1216, 1888
BspDI ATCGAT 1 cut(s) 1207
BspEI TCCGGA 1 cut(s) 1480
BspLI GGNNCC 5 cut(s) 10, 218, 386, 548, 1379
BspPI GGATC 3 cut(s) 379, 392, 1491
BspT107I GGYRCC 1 cut(s) 1377
BspTNI GGTCTC 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 3 cut(s) 183, 1157, 1966
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 209, 694, 1978
BssMI GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
BssSI CACGAG 2 cut(s) 167, 1326
BssT1I CCWWGG 3 cut(s) 209, 694, 1978
Bst2BI CACGAG 2 cut(s) 167, 1326
Bst2UI CCWGG 4 cut(s) 221, 332, 969, 1556
Bst4CI ACNGT 6 cut(s) 588, 661, 739, 1661, 1950, 1970
Bst6I CTCTTC 1 cut(s) 633
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 7, 1234, 1874
BstDEI CTNAG 6 cut(s) 112, 173, 1224, 1450, 1601, 1896
BstDSI CCRYGG 2 cut(s) 209, 694
BstF5I GGATG 7 cut(s) 689, 1082, 1480, 1526, 1792, 1815, 1864
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 31, 76
BstKTI GATC 7 cut(s) 38, 193, 259, 387, 724, 1211, 1486
BstMAI GTCTC 2 cut(s) 116, 941
BstMBI GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
BstMWI GCNNNNNNNGC 4 cut(s) 581, 869, 922, 1438
BstNI CCWGG 4 cut(s) 221, 332, 969, 1556
BstNSI RCATGY 2 cut(s) 706, 1429
BstSCI CCNGG 4 cut(s) 219, 330, 967, 1554
BstSFI CTRYAG 2 cut(s) 738, 1540
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 384, 721
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstYI RGATCY 2 cut(s) 384, 721
Bsu15I ATCGAT 1 cut(s) 1207
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 1207
BtgI CCRYGG 2 cut(s) 209, 694
BtsCI GGATG 7 cut(s) 689, 1082, 1480, 1526, 1792, 1815, 1864
BtsI GCAGTG 3 cut(s) 351, 753, 1177
BtsIMutI CAGTG 7 cut(s) 351, 584, 753, 1177, 1493, 1686, 1946
Cac8I GCNNGC 3 cut(s) 7, 1234, 1874
CfoI GCGC 2 cut(s) 31, 76
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 206, 1995
ClaI ATCGAT 1 cut(s) 1207
Csp6I GTAC 3 cut(s) 554, 652, 1378
CspCI CAANNNNNGTGG 2 cut(s) 1662, 1697
CviAII CATG 8 cut(s) 139, 210, 695, 703, 1016, 1307, 1426, 1670
CviQI GTAC 3 cut(s) 554, 652, 1378
DdeI CTNAG 6 cut(s) 112, 173, 1224, 1450, 1601, 1896
DpnI GATC 7 cut(s) 37, 192, 258, 386, 723, 1210, 1485
DpnII GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 209, 694, 1978
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 941
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 206, 1995
Eco47III AGCGCT 1 cut(s) 75
Eco57I CTGAAG 4 cut(s) 245, 390, 932, 1010
EcoO109I RGGNCCY 1 cut(s) 1995
EcoRII CCWGG 4 cut(s) 219, 330, 967, 1554
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 3 cut(s) 209, 694, 1978
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 3 cut(s) 209, 694, 1978
FaeI CATG 8 cut(s) 142, 213, 698, 706, 1019, 1310, 1429, 1673
FalI AAGNNNNNCTT 2 cut(s) 1884, 1916
FaqI GGGAC 1 cut(s) 1336
FatI CATG 8 cut(s) 138, 209, 694, 702, 1015, 1306, 1425, 1669
Fnu4HI GCNGC 2 cut(s) 98, 319
FokI GGATG 7 cut(s) 676, 1069, 1487, 1533, 1799, 1822, 1871
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 2 cut(s) 98, 319
FspBI CTAG 7 cut(s) 278, 576, 995, 1638, 1802, 1934, 1940
GlaI GCGC 2 cut(s) 30, 75
GluI GCNGC 2 cut(s) 98, 319
GsaI CCCAGC 2 cut(s) 484, 872
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 6, 1481
HhaI GCGC 2 cut(s) 31, 76
Hin1II CATG 8 cut(s) 142, 213, 698, 706, 1019, 1310, 1429, 1673
Hin6I GCGC 2 cut(s) 29, 74
HinP1I GCGC 2 cut(s) 29, 74
HincII GTYRAC 3 cut(s) 1318, 1547, 1779
HindII GTYRAC 3 cut(s) 1318, 1547, 1779
HinfI GANTC 4 cut(s) 64, 509, 1106, 1943
HpaI GTTAAC 2 cut(s) 1318, 1779
HpaII CCGG 2 cut(s) 6, 1481
HphI GGTGA 7 cut(s) 815, 857, 1019, 1570, 1628, 1634, 1673
Hpy166II GTNNAC 6 cut(s) 1150, 1318, 1547, 1607, 1625, 1779
Hpy8I GTNNAC 6 cut(s) 1150, 1318, 1547, 1607, 1625, 1779
HpyAV CCTTC 6 cut(s) 96, 262, 308, 1246, 1405, 1742
HpyCH4III ACNGT 6 cut(s) 588, 661, 739, 1661, 1950, 1970
HpyCH4IV ACGT 2 cut(s) 358, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 581, 869, 922, 1438
HpyF3I CTNAG 6 cut(s) 112, 173, 1224, 1450, 1601, 1896
HpySE526I ACGT 2 cut(s) 358, 774
Hsp92II CATG 8 cut(s) 142, 213, 698, 706, 1019, 1310, 1429, 1673
HspAI GCGC 2 cut(s) 29, 74
Kpn2I TCCGGA 1 cut(s) 1480
KpnI GGTACC 1 cut(s) 1381
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
KspAI GTTAAC 2 cut(s) 1318, 1779
Kzo9I GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
LmnI GCTCC 8 cut(s) 14, 71, 81, 155, 981, 1229, 1483, 1496
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 7 cut(s) 448, 698, 934, 952, 1428, 1465, 1511
MaeI CTAG 7 cut(s) 278, 576, 995, 1638, 1802, 1934, 1940
MaeII ACGT 2 cut(s) 358, 774
MaeIII GTNAC 6 cut(s) 185, 326, 354, 803, 1098, 1970
MalI GATC 7 cut(s) 37, 192, 258, 386, 723, 1210, 1485
MboI GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 2 cut(s) 384, 721
MhlI GDGCHC 2 cut(s) 865, 1493
MlyI GAGTC 4 cut(s) 73, 518, 1100, 1937
MmeI TCCRAC 3 cut(s) 409, 953, 1747
MroI TCCGGA 1 cut(s) 1480
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1192
MslI CAYNNNNRTG 2 cut(s) 1041, 1614
MspI CCGG 2 cut(s) 6, 1481
MspR9I CCNGG 4 cut(s) 221, 332, 969, 1556
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 1166
MvaI CCWGG 4 cut(s) 221, 332, 969, 1556
MwoI GCNNNNNNNGC 4 cut(s) 581, 869, 922, 1438
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 2 cut(s) 209, 694
NdeII GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 8 cut(s) 142, 213, 698, 706, 1019, 1310, 1429, 1673
NlaIV GGNNCC 5 cut(s) 10, 218, 386, 548, 1379
NmuCI GTSAC 5 cut(s) 185, 326, 354, 803, 1098
NspI RCATGY 2 cut(s) 706, 1429
PctI GAATGC 1 cut(s) 1166
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 1192
PflFI GACNNNGTC 1 cut(s) 622
PkrI GCNGC 2 cut(s) 99, 320
PleI GAGTC 4 cut(s) 72, 517, 1100, 1937
PpsI GAGTC 4 cut(s) 72, 517, 1100, 1937
PpuMI RGGWCCY 1 cut(s) 1995
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 2 cut(s) 1260, 2002
Psp5II RGGWCCY 1 cut(s) 1995
Psp6I CCWGG 4 cut(s) 219, 330, 967, 1554
PspFI CCCAGC 2 cut(s) 480, 868
PspGI CCWGG 4 cut(s) 219, 330, 967, 1554
PspN4I GGNNCC 5 cut(s) 10, 218, 386, 548, 1379
PspPI GGNCC 2 cut(s) 206, 1995
PspPPI RGGWCCY 1 cut(s) 1995
PsuI RGATCY 2 cut(s) 384, 721
PsyI GACNNNGTC 1 cut(s) 622
RsaI GTAC 3 cut(s) 555, 653, 1379
RsaNI GTAC 3 cut(s) 554, 652, 1378
RseI CAYNNNNRTG 2 cut(s) 1041, 1614
SatI GCNGC 2 cut(s) 98, 319
Sau3AI GATC 7 cut(s) 35, 190, 256, 384, 721, 1208, 1483
Sau96I GGNCC 2 cut(s) 206, 1995
SchI GAGTC 4 cut(s) 73, 518, 1100, 1937
ScrFI CCNGG 4 cut(s) 221, 332, 969, 1556
SduI GDGCHC 2 cut(s) 865, 1493
SfaNI GCATC 7 cut(s) 448, 698, 934, 952, 1428, 1465, 1511
SfcI CTRYAG 2 cut(s) 738, 1540
SinI GGWCC 2 cut(s) 206, 1995
SmiMI CAYNNNNRTG 2 cut(s) 1041, 1614
SmlI CTYRAG 3 cut(s) 836, 911, 1121
SmoI CTYRAG 3 cut(s) 836, 911, 1121
SpeI ACTAGT 1 cut(s) 1933
SsiI CCGC 3 cut(s) 131, 214, 318
SspMI CTAG 7 cut(s) 278, 576, 995, 1638, 1802, 1934, 1940
StyD4I CCNGG 4 cut(s) 219, 330, 967, 1554
StyI CCWWGG 3 cut(s) 209, 694, 1978
TaaI ACNGT 6 cut(s) 588, 661, 739, 1661, 1950, 1970
TaiI ACGT 2 cut(s) 361, 777
TaqI TCGA 4 cut(s) 195, 299, 1207, 1301
TatI WGTACW 1 cut(s) 651
TauI GCSGC 1 cut(s) 321
TscAI CASTG 7 cut(s) 351, 591, 753, 1177, 1493, 1686, 1953
TseFI GTSAC 5 cut(s) 185, 326, 354, 803, 1098
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 5 cut(s) 185, 326, 354, 803, 1098
TspDTI ATGAA 4 cut(s) 726, 972, 1826, 1851
TspGWI ACGGA 2 cut(s) 559, 1642
TspRI CASTG 7 cut(s) 351, 591, 753, 1177, 1493, 1686, 1953
Tth111I GACNNNGTC 1 cut(s) 622
VpaK11BI GGWCC 2 cut(s) 206, 1995
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 7 cut(s) 417, 463, 486, 494, 535, 715, 767
XbaI TCTAGA 1 cut(s) 1801
XceI RCATGY 2 cut(s) 706, 1429
XmnI GAANNNNTTC 1 cut(s) 1192
XspI CTAG 7 cut(s) 278, 576, 995, 1638, 1802, 1934, 1940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.