Rmu_sc0002202.1_g000020

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000376
Physical Location & Seq
Reverse (-)
97047 .. 97805
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000020.1.cds

Sequence Viewer

Length: 759 bp
atggatcacaaattttatgtgtttctgacattaaataaatatcaatccaatcatgctgttcgtttccttgaggttgctgatctgaattttggatgtgcccaagaacagagaagtttattaaattcgtccaattatattgaagcctggaaaagtgtaaaccttgctgctaagattttgaaggaacagatgcagatcttacttgtaaatgtgaagaatggcatttgtaatggaaaagaggaagtttctgttgatgctttaaatttaaacaagtttgcttccataatttcatgttttagtgggtttttatggggcctggcatgcgttgtgatcgacacagatgggagaaatagtgatgagaaagctcagttgtcaaggtggaaacctgaaccaatctccgaactcaacctctgtataaaggtttttgaagaaatttctagtcttctactacaaatgtttattcttgacgataatcagcagcccacaactatatgtcatgcctataatcttcagaagtcgggttataatttagatttgtttggtgcagagaagattttgccggaaggcaatgatgctgacactgatattgcatgtggtggactgcaggatgaatctgcaattgcagtgacatgctcagcatcatctgacatctgtgaagactctgtaattggtagtgctcatagaagaagaccgcgcttgaaagatgcaaaagtgttgctagtgttctcactgctgttgattcatttgaactgcaatctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

252

Amino Acids

28.06

Weight (kDa)

5.15

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AccII CGCG 1 cut(s) 691
AciI CCGC 1 cut(s) 689
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 5 cut(s) 11, 85, 121, 259, 429
AcuI CTGAAG 1 cut(s) 491
AgsI TTSAA 5 cut(s) 140, 178, 425, 697, 745
AjnI CCWGG 2 cut(s) 143, 312
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 676
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 164, 475
ApoI RAATTY 5 cut(s) 11, 85, 121, 259, 429
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 100
BbsI GAAGAC 3 cut(s) 431, 660, 691
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 151, 487
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 2 cut(s) 145, 314
BfaI CTAG 2 cut(s) 435, 716
BfmI CTRYAG 1 cut(s) 599
BglII AGATCT 1 cut(s) 192
BisI GCNGC 2 cut(s) 165, 476
BlpI GCTNAGC 1 cut(s) 631
BlsI GCNGC 2 cut(s) 166, 477
Bme1390I CCNGG 2 cut(s) 145, 314
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 145, 314
BmsI GCATC 5 cut(s) 177, 241, 559, 644, 691
BpiI GAAGAC 3 cut(s) 431, 660, 691
Bpu1102I GCTNAGC 1 cut(s) 631
BpuEI CTTGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse3DI GCAATG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 2 cut(s) 145, 314
BseGI GGATG 2 cut(s) 98, 610
BseJI GATNNNNATC 1 cut(s) 191
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 377, 645
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 2 cut(s) 151, 487
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 691
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 557
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 100, 676
Bsp143I GATC 4 cut(s) 4, 79, 192, 327
Bsp1720I GCTNAGC 1 cut(s) 631
BspACI CCGC 1 cut(s) 689
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 376, 644
BspFNI CGCG 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 571
BssMI GATC 4 cut(s) 4, 79, 192, 327
Bst2UI CCWGG 2 cut(s) 145, 314
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 168, 363, 631
BstF5I GGATG 2 cut(s) 98, 610
BstFNI CGCG 1 cut(s) 691
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 4 cut(s) 7, 82, 195, 330
BstMBI GATC 4 cut(s) 4, 79, 192, 327
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 2 cut(s) 145, 314
BstNSI RCATGY 3 cut(s) 321, 591, 630
BstSCI CCNGG 2 cut(s) 143, 312
BstSFI CTRYAG 1 cut(s) 599
BstSLI GKGCMC 1 cut(s) 100
BstUI CGCG 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 151, 487
BstV2I GAAGAC 3 cut(s) 431, 660, 691
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 98, 610
BtsI GCAGTG 2 cut(s) 627, 725
BtsIMutI CAGTG 3 cut(s) 576, 627, 725
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 693
Cfr13I GGNCC 1 cut(s) 310
CviAII CATG 6 cut(s) 53, 288, 318, 494, 588, 627
CviJI RGCY 4 cut(s) 143, 312, 362, 478
CviKI_1 RGCY 4 cut(s) 143, 312, 362, 478
DdeI CTNAG 3 cut(s) 168, 363, 631
DpnI GATC 4 cut(s) 6, 81, 194, 329
DpnII GATC 4 cut(s) 4, 79, 192, 327
DraI TTTAAA 2 cut(s) 258, 264
Eco57I CTGAAG 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 143, 312
FaeI CATG 6 cut(s) 56, 291, 321, 497, 591, 630
FatI CATG 6 cut(s) 52, 287, 317, 493, 587, 626
Fnu4HI GCNGC 2 cut(s) 165, 476
FokI GGATG 2 cut(s) 105, 617
Fsp4HI GCNGC 2 cut(s) 165, 476
FspBI CTAG 2 cut(s) 435, 716
GlaI GCGC 1 cut(s) 692
GluI GCNGC 2 cut(s) 165, 476
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 557
HhaI GCGC 1 cut(s) 693
Hin1II CATG 6 cut(s) 56, 291, 321, 497, 591, 630
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HinfI GANTC 3 cut(s) 608, 656, 736
HpaII CCGG 1 cut(s) 557
Hpy166II GTNNAC 2 cut(s) 157, 596
Hpy188I TCNGA 5 cut(s) 27, 84, 397, 510, 643
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 2 cut(s) 157, 596
HpyAV CCTTC 2 cut(s) 172, 554
HpyCH4V TGCA 8 cut(s) 190, 542, 587, 601, 614, 620, 704, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 3 cut(s) 168, 363, 631
Hsp92II CATG 6 cut(s) 56, 291, 321, 497, 591, 630
HspAI GCGC 1 cut(s) 691
Kzo9I GATC 4 cut(s) 4, 79, 192, 327
LpnPI CCDG 7 cut(s) 130, 157, 299, 326, 396, 570, 587
Lsp1109I GCAGC 2 cut(s) 151, 487
LweI GCATC 5 cut(s) 177, 241, 559, 644, 691
MaeI CTAG 2 cut(s) 435, 716
MaeIII GTNAC 1 cut(s) 622
MalI GATC 4 cut(s) 6, 81, 194, 329
MboI GATC 4 cut(s) 4, 79, 192, 327
MboII GAAGA 8 cut(s) 223, 431, 437, 497, 559, 665, 693, 696
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 100, 676
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 3 cut(s) 64, 229, 416
MseI TTAA 5 cut(s) 32, 119, 257, 263, 757
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 2 cut(s) 145, 314
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 2 cut(s) 145, 314
MvnI CGCG 1 cut(s) 691
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 4 cut(s) 4, 79, 192, 327
NlaIII CATG 6 cut(s) 56, 291, 321, 497, 591, 630
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 3 cut(s) 321, 591, 630
PaeI GCATGC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 608, 736
PkrI GCNGC 2 cut(s) 166, 477
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
PsiI TTATAA 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 143, 312
PspGI CCWGG 2 cut(s) 143, 312
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 1 cut(s) 603
PsuI RGATCY 1 cut(s) 192
SaqAI TTAA 5 cut(s) 32, 119, 257, 263, 757
SatI GCNGC 2 cut(s) 165, 476
Sau3AI GATC 4 cut(s) 4, 79, 192, 327
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 2 cut(s) 145, 314
SduI GDGCHC 2 cut(s) 100, 676
SetI ASST 7 cut(s) 75, 162, 364, 377, 385, 408, 420
SfaNI GCATC 5 cut(s) 177, 241, 559, 644, 691
SfcI CTRYAG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SphI GCATGC 1 cut(s) 321
SsiI CCGC 1 cut(s) 689
SspMI CTAG 2 cut(s) 435, 716
StyD4I CCNGG 2 cut(s) 143, 312
TaqI TCGA 1 cut(s) 330
TfiI GAWTC 2 cut(s) 608, 736
Tru1I TTAA 5 cut(s) 32, 119, 257, 263, 757
Tru9I TTAA 5 cut(s) 32, 119, 257, 263, 757
TscAI CASTG 3 cut(s) 583, 627, 732
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 2 cut(s) 164, 475
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 276, 621, 728
TspRI CASTG 3 cut(s) 583, 627, 732
XapI RAATTY 5 cut(s) 11, 85, 121, 259, 429
XceI RCATGY 3 cut(s) 321, 591, 630
XspI CTAG 2 cut(s) 435, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.