Rorug05G0513900

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000376
Physical Location & Seq
Reverse (-)
69891219 .. 69892985
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0513900.1

Sequence Viewer

Length: 1767 bp
ATGTCACAGTTACGAAGAAACATGCTAGTGCACATTCCAATTGCTCATACCTTCCTTTTCTTCCTCATCTTCATTTTCTCTTCCAATGTATCTACAAATATTCATGCATGCAACCAAAGTGAGCGCAGCTCTCTCTTATCCTTTGCCCTAACTCTGTCTAATTCACCACCTTTAAATTGGACTGCAGTTAATTGTTGCCATTGGGAGGGCATAACTTGCGATCTAGATGGTTCGGTCACCCATTTGAGCTTACCCTCCAAAGAAATAAAACTCAAAGGAGGTGTATTTCCTTTGTCAATATCACTTCAAAATCTCACACATCTCACCTACTTGAATCTCTCTCACAATTTACTTTATGGCTCACTAGATCAAACTGCATTTTTCTTGTCCTTCAATAATCTTGAGATCCTAGATTTGAGCTATAACCGTCTTTTTGGAGATTTACCATTTTCTCTACCATTCACTCATATACGGACATTGGATTTGTCCAGCAATCATTTCCATGGTGCAATTCCATCTTCAACTTTCCAACAAGCTTGGAATTTGACCAGTTTTAATGTCAGCAACAATAGCTTCACCGGGCCTATACCATCCTCCTATATTTGTCTTCATTCTAATACCTTGGTTAAACGATTGGATTTTTCTTTCAATAAATTCAATGGAAAGATTTCTCCTGGATTAGGGAAGTGTTCAAATCTGAAGGTTTTTCGTGCTGGTCACAATAACCTTTCGGGATTACTTCCTGAAGATGTCTATAATGCTACCAAACTTGAAGAAATTGCATTACCTCTCAATTCACTATATGGCACCATAAGTGAGAGAATTGCTAACCTCAGCCATCTCAAAATTCTTGGCCTCAACTCTAATAAATTGAGTGGTGTGCTCCCTGCAGGTATTGGTAAGTTATCCAATCTCCAACTCATACTCCTTGACTTTAACAGTCTAGAAGGTTCTTTGCCCCCATCCTTGATGAATTGCACAAACCTTATAGAACTGCGTTTGGCATTCAACTACTTGAAAGGGGACATCACCAAGCTTAATTTTTCCAAACTCAGTCAACTTGCTAAACTTGATCTAGGGAATAATTGTCTCACTGGTGTTGTGCCAATAAGCCTTTACTCATGCAAGTTCCTTAAAGCAATTCGACTGAGTGACAACGACCTGGAAGGACAAATCCAGCCTGAGATTTTGTCATTAAAATCCTTGTCCTTCCTCTCGCTTAGTACCAATAGATTGACCAACATGACTAGAGCAATGAAATTATTTATGCGTTGCAGAAGTCTTGAATTCTTGGCCTTAGGATCTGCTTTTGTAGATGAGGAAACGCGAGCTGATTTTGGTATTGTTGATTTTAGTGGACTCCAAAATCTTCGATTTTTGGATTTGGGCTATTGTCACCTTACTGGTGAACTTCCTATATGGTTATCTAAGCTCAAGAAGCTAGGGATCTTGTATATGGACCATAATAAAATCACAGGGTCAATTCCTTGTTGGTTGGGGACTCTTCCAATGCTCTTTTATATGAACTTGGGATCCAACTTTATTTCAGGTGAATTTCCAAAGGCACTTTGTAGACTACCAAAGTTGGTATCTGCATGGACTGCAGATCAGATAGACGATAATGATCTTGAATTGCCTATCTATGGATCTCAAGGTAAATTATCGGTGCAATACACATTTTCTTGCTTTGCTCCAGAAATATACGTAGGAAATAATGCCATTAATGGGAGCATACCTTTTGAGATTGGCCAATTGCAGCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

588

Amino Acids

65.31

Weight (kDa)

7.88

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 39 - 74 1.4e-06 Leucine rich repeat N-terminal domain
LRR_8 PF13855 328 - 388 3.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 806
AccI GTMKAC 1 cut(s) 1573
AccII CGCG 1 cut(s) 1327
AclWI GGATC 6 cut(s) 400, 1309, 1454, 1527, 1540, 1654
AcoI YGGCCR 1 cut(s) 1747
AcsI RAATTY 5 cut(s) 541, 653, 846, 1286, 1553
AcuI CTGAAG 2 cut(s) 719, 765
AfaI GTAC 1 cut(s) 1225
AfiI CCNNNNNNNGG 4 cut(s) 205, 680, 1643, 1725
AjnI CCWGG 2 cut(s) 673, 1161
AjuI GAANNNNNNNTTGG 1 cut(s) 1743
AloI GAACNNNNNNTCC 2 cut(s) 1517, 1549
Alw21I GWGCWC 2 cut(s) 33, 885
Alw26I GTCTC 1 cut(s) 1094
Alw44I GTGCAC 1 cut(s) 29
AlwI GGATC 6 cut(s) 400, 1309, 1454, 1527, 1540, 1654
AlwNI CAGNNNCTG 1 cut(s) 1762
AoxI GGCC 4 cut(s) 581, 853, 1293, 1747
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 126, 1756
ApoI RAATTY 5 cut(s) 541, 653, 846, 1286, 1553
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AseI ATTAAT 1 cut(s) 1722
Asp700I GAANNNNTTC 1 cut(s) 667
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 581, 1459
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 8 cut(s) 156, 229, 316, 568, 1021, 1388, 1418, 1562
AvaII GGWCC 1 cut(s) 1459
AxyI CCTNAGG 1 cut(s) 1297
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 1749
BamHI GGATCC 1 cut(s) 1532
BanI GGYRCC 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 2 cut(s) 33, 885
BbvCI CCTCAGC 1 cut(s) 833
BbvI GCAGC 1 cut(s) 138
BccI CCATC 5 cut(s) 221, 523, 598, 846, 970
BciT130I CCWGG 2 cut(s) 675, 1163
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 1094
BfaI CTAG 8 cut(s) 26, 224, 365, 410, 944, 1076, 1248, 1442
BfmI CTRYAG 3 cut(s) 183, 888, 1602
BfuAI ACCTGC 1 cut(s) 881
BisI GCNGC 2 cut(s) 127, 1757
BlsI GCNGC 2 cut(s) 128, 1758
Bme1390I CCNGG 3 cut(s) 580, 675, 1163
Bme18I GGWCC 1 cut(s) 1459
BmgT120I GGNCC 2 cut(s) 581, 1459
BmiI GGNNCC 2 cut(s) 808, 1534
BmrFI CCNGG 3 cut(s) 580, 675, 1163
BpiI GAAGAC 1 cut(s) 599
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 1677
Bpu10I CCTNAGC 1 cut(s) 833
BpuEI CTTGAG 3 cut(s) 422, 1418, 1635
BpuMI CCSGG 1 cut(s) 580
BsaAI YACGTR 1 cut(s) 1705
BsaBI GATNNNNATC 1 cut(s) 1623
BsaJI CCNNGG 2 cut(s) 502, 621
BsaXI ACNNNNNCTCC 2 cut(s) 909, 939
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 680, 1643, 1725
Bse1I ACTGG 3 cut(s) 549, 1099, 1408
Bse21I CCTNAGG 1 cut(s) 1297
Bse3DI GCAATG 1 cut(s) 1260
Bse8I GATNNNNATC 1 cut(s) 1623
BseBI CCWGG 2 cut(s) 675, 1163
BseDI CCNNGG 2 cut(s) 502, 621
BseGI GGATG 2 cut(s) 590, 962
BseJI GATNNNNATC 1 cut(s) 1623
BseLI CCNNNNNNNGG 4 cut(s) 205, 680, 1643, 1725
BseMI GCAATG 1 cut(s) 1260
BseMII CTCAG 4 cut(s) 847, 1066, 1139, 1173
BseNI ACTGG 3 cut(s) 549, 1099, 1408
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 1327
BshFI GGCC 4 cut(s) 583, 855, 1295, 1749
BshNI GGYRCC 1 cut(s) 806
BsiHKAI GWGCWC 2 cut(s) 33, 885
BsiSI CCGG 1 cut(s) 579
BslFI GGGAC 2 cut(s) 1037, 1513
BslI CCNNNNNNNGG 4 cut(s) 205, 680, 1643, 1725
BsmAI GTCTC 1 cut(s) 1094
BsmFI GGGAC 2 cut(s) 1037, 1513
BsmI GAATGC 1 cut(s) 1004
BsnI GGCC 4 cut(s) 583, 855, 1295, 1749
Bsp1286I GDGCHC 2 cut(s) 33, 885
Bsp19I CCATGG 1 cut(s) 502
BspANI GGCC 4 cut(s) 583, 855, 1295, 1749
BspCNI CTCAG 4 cut(s) 846, 1065, 1140, 1174
BspFNI CGCG 1 cut(s) 1327
BspLI GGNNCC 2 cut(s) 808, 1534
BspMAI CTGCAG 3 cut(s) 187, 892, 1606
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 6 cut(s) 400, 1309, 1454, 1527, 1540, 1654
BspT107I GGYRCC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 1260
BsrI ACTGG 3 cut(s) 549, 1099, 1408
BssECI CCNNGG 2 cut(s) 502, 621
BssT1I CCWWGG 2 cut(s) 502, 621
Bst2UI CCWGG 2 cut(s) 675, 1163
Bst4CI ACNGT 3 cut(s) 9, 428, 941
Bst6I CTCTTC 2 cut(s) 85, 1509
BstAPI GCANNNNNTGC 2 cut(s) 216, 1601
BstBAI YACGTR 1 cut(s) 1705
BstC8I GCNNGC 2 cut(s) 109, 1329
BstDEI CTNAG 7 cut(s) 833, 1052, 1148, 1182, 1220, 1297, 1428
BstDSI CCRYGG 1 cut(s) 502
BstEII GGTNACC 1 cut(s) 235
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 2 cut(s) 590, 962
BstFNI CGCG 1 cut(s) 1327
BstHHI GCGC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 1094
BstMWI GCNNNNNNNGC 4 cut(s) 216, 570, 1438, 1601
BstNI CCWGG 2 cut(s) 675, 1163
BstNSI RCATGY 2 cut(s) 25, 111
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 3 cut(s) 578, 673, 1161
BstSFI CTRYAG 3 cut(s) 183, 888, 1602
BstSLI GKGCMC 1 cut(s) 33
BstSNI TACGTA 1 cut(s) 1705
BstUI CGCG 1 cut(s) 1327
BstV1I GCAGC 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 5 cut(s) 405, 1301, 1446, 1532, 1646
BstYI RGATCY 5 cut(s) 405, 1301, 1446, 1532, 1646
Bsu36I CCTNAGG 1 cut(s) 1297
BsuRI GGCC 4 cut(s) 583, 855, 1295, 1749
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 2 cut(s) 590, 962
BtsIMutI CAGTG 1 cut(s) 1092
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 2 cut(s) 109, 1329
CaiI CAGNNNCTG 1 cut(s) 1762
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 581, 1459
Csp6I GTAC 1 cut(s) 1224
CviAII CATG 7 cut(s) 22, 104, 108, 503, 1122, 1243, 1596
CviQI GTAC 1 cut(s) 1224
DdeI CTNAG 7 cut(s) 833, 1052, 1148, 1182, 1220, 1297, 1428
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 1747
Eam1104I CTCTTC 2 cut(s) 85, 1509
EarI CTCTTC 2 cut(s) 85, 1509
Eco105I TACGTA 1 cut(s) 1705
Eco130I CCWWGG 2 cut(s) 502, 621
Eco47I GGWCC 1 cut(s) 1459
Eco57I CTGAAG 2 cut(s) 719, 765
Eco81I CCTNAGG 1 cut(s) 1297
Eco91I GGTNACC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoO65I GGTNACC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 1286
EcoRII CCWGG 2 cut(s) 673, 1161
EcoT14I CCWWGG 2 cut(s) 502, 621
EcoT22I ATGCAT 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 502, 621
FaeI CATG 7 cut(s) 25, 107, 111, 506, 1125, 1246, 1599
FaqI GGGAC 2 cut(s) 1037, 1513
FatI CATG 7 cut(s) 21, 103, 107, 502, 1121, 1242, 1595
FblI GTMKAC 1 cut(s) 1573
Fnu4HI GCNGC 2 cut(s) 127, 1757
FokI GGATG 2 cut(s) 577, 949
Fsp4HI GCNGC 2 cut(s) 127, 1757
FspBI CTAG 8 cut(s) 26, 224, 365, 410, 944, 1076, 1248, 1442
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 127, 1757
GsuI CTGGAG 1 cut(s) 1677
HaeIII GGCC 4 cut(s) 583, 855, 1295, 1749
HapII CCGG 1 cut(s) 579
HhaI GCGC 1 cut(s) 126
Hin1II CATG 7 cut(s) 25, 107, 111, 506, 1125, 1246, 1599
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 1058
HindII GTYRAC 1 cut(s) 1058
HindIII AAGCTT 2 cut(s) 534, 1034
HinfI GANTC 3 cut(s) 334, 1359, 1501
HpaII CCGG 1 cut(s) 579
HphI GGTGA 8 cut(s) 156, 229, 316, 568, 1021, 1388, 1418, 1562
Hpy166II GTNNAC 5 cut(s) 31, 1058, 1358, 1409, 1574
Hpy188I TCNGA 2 cut(s) 699, 1611
Hpy188III TCNNGA 9 cut(s) 224, 401, 732, 743, 944, 1283, 1435, 1628, 1694
Hpy8I GTNNAC 5 cut(s) 31, 1058, 1358, 1409, 1574
HpyAV CCTTC 6 cut(s) 61, 400, 694, 941, 1160, 1219
HpyCH4III ACNGT 3 cut(s) 9, 428, 941
HpyCH4IV ACGT 1 cut(s) 1704
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 570, 1438, 1601
HpyF3I CTNAG 7 cut(s) 833, 1052, 1148, 1182, 1220, 1297, 1428
HpySE526I ACGT 1 cut(s) 1704
Hsp92II CATG 7 cut(s) 25, 107, 111, 506, 1125, 1246, 1599
HspAI GCGC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 888, 1696, 1728
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 8 cut(s) 26, 224, 365, 410, 944, 1076, 1248, 1442
MaeII ACGT 1 cut(s) 1704
MaeIII GTNAC 6 cut(s) 3, 9, 235, 716, 1151, 1394
MfeI CAATTG 2 cut(s) 39, 1751
MflI RGATCY 5 cut(s) 405, 1301, 1446, 1532, 1646
MhlI GDGCHC 2 cut(s) 33, 885
MlsI TGGCCA 1 cut(s) 1749
MluNI TGGCCA 1 cut(s) 1749
MlyI GAGTC 2 cut(s) 1353, 1495
MmeI TCCRAC 3 cut(s) 553, 940, 1560
Mox20I TGGCCA 1 cut(s) 1749
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 667
MscI TGGCCA 1 cut(s) 1749
MseI TTAA 9 cut(s) 173, 189, 555, 627, 936, 1038, 1134, 1196, 1722
MslI CAYNNNNRTG 2 cut(s) 26, 501
Msp20I TGGCCA 1 cut(s) 1749
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 3 cut(s) 580, 675, 1163
MunI CAATTG 2 cut(s) 39, 1751
Mva1269I GAATGC 1 cut(s) 1004
MvaI CCWGG 2 cut(s) 675, 1163
MvnI CGCG 1 cut(s) 1327
MwoI GCNNNNNNNGC 4 cut(s) 216, 570, 1438, 1601
NciI CCSGG 1 cut(s) 580
NcoI CCATGG 1 cut(s) 502
NlaIII CATG 7 cut(s) 25, 107, 111, 506, 1125, 1246, 1599
NlaIV GGNNCC 2 cut(s) 808, 1534
NmuCI GTSAC 5 cut(s) 3, 235, 716, 1151, 1394
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 2 cut(s) 25, 111
PaeI GCATGC 1 cut(s) 111
PctI GAATGC 1 cut(s) 1004
PdmI GAANNNNTTC 1 cut(s) 667
PfeI GAWTC 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 673
PkrI GCNGC 2 cut(s) 128, 1758
PleI GAGTC 2 cut(s) 1353, 1495
PpsI GAGTC 2 cut(s) 1353, 1495
Ppu21I YACGTR 1 cut(s) 1705
PshBI ATTAAT 1 cut(s) 1722
Psp6I CCWGG 2 cut(s) 673, 1161
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 673, 1161
PspN4I GGNNCC 2 cut(s) 808, 1534
PspPI GGNCC 2 cut(s) 581, 1459
PstI CTGCAG 3 cut(s) 187, 892, 1606
PstNI CAGNNNCTG 1 cut(s) 1762
PsuI RGATCY 5 cut(s) 405, 1301, 1446, 1532, 1646
RsaI GTAC 1 cut(s) 1225
RsaNI GTAC 1 cut(s) 1224
RseI CAYNNNNRTG 2 cut(s) 26, 501
SaqAI TTAA 9 cut(s) 173, 189, 555, 627, 936, 1038, 1134, 1196, 1722
SatI GCNGC 2 cut(s) 127, 1757
Sau96I GGNCC 2 cut(s) 581, 1459
SbfI CCTGCAGG 1 cut(s) 892
SchI GAGTC 2 cut(s) 1353, 1495
ScrFI CCNGG 3 cut(s) 580, 675, 1163
SdaI CCTGCAGG 1 cut(s) 892
SduI GDGCHC 2 cut(s) 33, 885
SfcI CTRYAG 3 cut(s) 183, 888, 1602
SinI GGWCC 1 cut(s) 1459
SmiMI CAYNNNNRTG 2 cut(s) 26, 501
SmlI CTYRAG 3 cut(s) 401, 1433, 1650
SmoI CTYRAG 3 cut(s) 401, 1433, 1650
SnaBI TACGTA 1 cut(s) 1705
SphI GCATGC 1 cut(s) 111
Sse8387I CCTGCAGG 1 cut(s) 892
SspI AATATT 1 cut(s) 100
SspMI CTAG 8 cut(s) 26, 224, 365, 410, 944, 1076, 1248, 1442
StyD4I CCNGG 3 cut(s) 578, 673, 1161
StyI CCWWGG 2 cut(s) 502, 621
TaaI ACNGT 3 cut(s) 9, 428, 941
TaiI ACGT 1 cut(s) 1707
TaqI TCGA 2 cut(s) 1144, 1372
TaqII GACCGA 1 cut(s) 223
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 9 cut(s) 173, 189, 555, 627, 936, 1038, 1134, 1196, 1722
Tru9I TTAA 9 cut(s) 173, 189, 555, 627, 936, 1038, 1134, 1196, 1722
TscAI CASTG 1 cut(s) 1099
TseFI GTSAC 5 cut(s) 3, 235, 716, 1151, 1394
TseI GCWGC 2 cut(s) 126, 1756
Tsp45I GTSAC 5 cut(s) 3, 235, 716, 1151, 1394
TspDTI ATGAA 6 cut(s) 61, 92, 599, 986, 1271, 1538
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 1 cut(s) 1099
VneI GTGCAC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 1459
VspI ATTAAT 1 cut(s) 1722
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 5 cut(s) 541, 653, 846, 1286, 1553
XbaI TCTAGA 2 cut(s) 223, 943
XceI RCATGY 2 cut(s) 25, 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 1573
XmnI GAANNNNTTC 1 cut(s) 667
XspI CTAG 8 cut(s) 26, 224, 365, 410, 944, 1076, 1248, 1442
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.