Rh6CG023500

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2127960 .. 2129115
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG023500.1

Sequence Viewer

Length: 819 bp
ATGGCCGATTCTGGAGCTAACCCTAAACAGAGACAACCCAAGAAGAACAAGAAGAAGAGAAAGCAGAGCGGACCCGAAGAATCCGAAAGGCCGCCCAAAACTAACCGCACTACTTCATCAGAGAACGAGAATGAACCACAAGACCAAAACTTTGAAGTTGGAAAAGCTGAAAAACCCAAACAAGGAGGTGCATGGAGGAACCTGGAGTTAATTCTTTCAATCCAGAACAGAGAGCTTGATCTTCACAAGAAGGTGGAACTAGCTCATGGTTTTGTGATGTCGAGAGGGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGCGGTGAACATGTCACGTTTAATAATATTTGTCAGTGATTGGGTCCAATCATTGTTGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCTGAAGTTATATACACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTCTGAAATTAAATGTTTCTTTAACTTTCTCACGGAACCTTTTACGCTCTATATGTTGGATTGCAAGAAGTGCACTGTCCTCATTGAACAAAACATTTATTGGTGAAGGGTTACAATTGTACACTAATGTGCTTGATTGTATTTCTTTGGTATTTTCATCCCAAGAAGGCTTCTCAAATGAAAATTTAGACATGTGGATTTCACCTGTAAGTTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCTCTTGTTAGTGGCAATGAGGGTGTATTTGTTTCCAATTCTTGTGCTTGGTTCTTGAGCCATTTGCCAGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

272

Amino Acids

30.64

Weight (kDa)

6.04

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 4 cut(s) 69, 92, 106, 326
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 476, 676, 728
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 3 cut(s) 333, 441, 684
AgsI TTSAA 4 cut(s) 155, 219, 475, 580
AjnI CCWGG 2 cut(s) 201, 808
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 6 cut(s) 17, 167, 235, 263, 428, 743
AluI AGCT 6 cut(s) 17, 167, 235, 263, 428, 743
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 25, 498
Alw44I GTGCAC 1 cut(s) 564
AoxI GGCC 2 cut(s) 3, 89
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 3 cut(s) 476, 676, 728
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspS9I GGNCC 2 cut(s) 71, 367
AsuHPI GGTGA 3 cut(s) 340, 608, 687
AvaII GGWCC 2 cut(s) 71, 367
BaeGI GKGCMC 1 cut(s) 568
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 315
BciT130I CCWGG 2 cut(s) 203, 810
BcoDI GTCTC 2 cut(s) 25, 498
BfaI CTAG 1 cut(s) 260
BisI GCNGC 2 cut(s) 92, 304
BlsI GCNGC 2 cut(s) 93, 305
Bme1390I CCNGG 2 cut(s) 203, 810
Bme18I GGWCC 2 cut(s) 71, 367
BmgT120I GGNCC 2 cut(s) 71, 367
BmiI GGNNCC 4 cut(s) 73, 200, 368, 530
BmrFI CCNGG 2 cut(s) 203, 810
BmsI GCATC 2 cut(s) 430, 449
BpmI CTGGAG 2 cut(s) 33, 224
BpuEI CTTGAG 1 cut(s) 817
BsaAI YACGTR 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 718
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 2 cut(s) 203, 810
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 1 cut(s) 650
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 763
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 1 cut(s) 315
BseYI CCCAGC 1 cut(s) 462
BshFI GGCC 2 cut(s) 5, 91
BsiHKAI GWGCWC 1 cut(s) 568
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 25, 498
BsnI GGCC 2 cut(s) 5, 91
Bsp1286I GDGCHC 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 4 cut(s) 69, 92, 106, 326
BspANI GGCC 2 cut(s) 5, 91
BspLI GGNNCC 4 cut(s) 73, 200, 368, 530
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 763
BsrGI TGTACA 1 cut(s) 612
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 2 cut(s) 203, 810
Bst4CI ACNGT 2 cut(s) 570, 737
Bst6I CTCTTC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 444
BstF5I GGATG 1 cut(s) 650
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 25, 498
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 2 cut(s) 203, 810
BstNSI RCATGY 2 cut(s) 337, 688
BstSCI CCNGG 2 cut(s) 201, 808
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 1 cut(s) 315
BsuRI GGCC 2 cut(s) 5, 91
BtsCI GGATG 1 cut(s) 650
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 4 cut(s) 313, 364, 566, 742
Cfr13I GGNCC 2 cut(s) 71, 367
Csp6I GTAC 1 cut(s) 613
CviAII CATG 4 cut(s) 192, 266, 334, 685
CviQI GTAC 1 cut(s) 613
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 71, 367
Eco57I CTGAAG 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 201, 808
EcoT14I CCWWGG 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 4 cut(s) 195, 269, 337, 688
FaiI YATR 8 cut(s) 193, 267, 335, 437, 439, 545, 547, 686
FatI CATG 4 cut(s) 191, 265, 333, 684
Fnu4HI GCNGC 2 cut(s) 92, 304
FokI GGATG 1 cut(s) 637
Fsp4HI GCNGC 2 cut(s) 92, 304
FspBI CTAG 1 cut(s) 260
GluI GCNGC 2 cut(s) 92, 304
GsaI CCCAGC 1 cut(s) 466
GsuI CTGGAG 2 cut(s) 33, 224
HaeIII GGCC 2 cut(s) 5, 91
Hin1II CATG 4 cut(s) 195, 269, 337, 688
HinfI GANTC 3 cut(s) 8, 80, 491
HphI GGTGA 3 cut(s) 340, 608, 687
Hpy166II GTNNAC 3 cut(s) 331, 566, 615
Hpy188I TCNGA 4 cut(s) 85, 121, 388, 498
Hpy188III TCNNGA 5 cut(s) 12, 223, 282, 713, 796
Hpy8I GTNNAC 3 cut(s) 331, 566, 615
HpyAV CCTTC 6 cut(s) 244, 283, 290, 383, 593, 653
HpyCH4III ACNGT 2 cut(s) 570, 737
HpyCH4IV ACGT 2 cut(s) 340, 443
HpyCH4V TGCA 3 cut(s) 191, 557, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpySE526I ACGT 2 cut(s) 340, 443
Hsp92II CATG 4 cut(s) 195, 269, 337, 688
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 188, 215, 236, 448, 711, 795
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 2 cut(s) 430, 449
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 340, 443
MaeIII GTNAC 2 cut(s) 336, 603
MalI GATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 69
MboI GATC 1 cut(s) 238
MboII GAAGA 6 cut(s) 55, 64, 67, 89, 233, 305
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 7 cut(s) 210, 476, 500, 608, 676, 728, 778
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 2 cut(s) 139, 530
MnlI CCTC 8 cut(s) 179, 189, 278, 293, 307, 481, 583, 754
MseI TTAA 6 cut(s) 209, 344, 455, 503, 515, 817
MslI CAYNNNNRTG 1 cut(s) 620
MspR9I CCNGG 2 cut(s) 203, 810
MunI CAATTG 1 cut(s) 608
MvaI CCWGG 2 cut(s) 203, 810
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeII GATC 1 cut(s) 238
NlaIII CATG 4 cut(s) 195, 269, 337, 688
NlaIV GGNNCC 4 cut(s) 73, 200, 368, 530
NmuCI GTSAC 1 cut(s) 336
NspI RCATGY 2 cut(s) 337, 688
OliI CACNNNNGTG 1 cut(s) 620
PciI ACATGT 2 cut(s) 333, 684
PfeI GAWTC 2 cut(s) 8, 80
PkrI GCNGC 2 cut(s) 93, 305
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Ppu21I YACGTR 1 cut(s) 444
PscI ACATGT 2 cut(s) 333, 684
Psp6I CCWGG 2 cut(s) 201, 808
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 2 cut(s) 201, 808
PspN4I GGNNCC 4 cut(s) 73, 200, 368, 530
PspPI GGNCC 2 cut(s) 71, 367
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 6 cut(s) 209, 344, 455, 503, 515, 817
SatI GCNGC 2 cut(s) 92, 304
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 71, 367
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 203, 810
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 2 cut(s) 430, 449
SinI GGWCC 2 cut(s) 71, 367
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 7 cut(s) 210, 476, 500, 608, 676, 728, 778
SsiI CCGC 4 cut(s) 69, 92, 106, 326
SspI AATATT 1 cut(s) 351
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 201, 808
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 2 cut(s) 570, 737
TaiI ACGT 2 cut(s) 343, 446
TaqI TCGA 1 cut(s) 281
TasI AATT 7 cut(s) 210, 476, 500, 608, 676, 728, 778
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 2 cut(s) 8, 80
Tru1I TTAA 6 cut(s) 209, 344, 455, 503, 515, 817
Tru9I TTAA 6 cut(s) 209, 344, 455, 503, 515, 817
TscAI CASTG 4 cut(s) 313, 364, 573, 742
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 4 cut(s) 105, 147, 639, 687
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 4 cut(s) 313, 364, 573, 742
VneI GTGCAC 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 71, 367
XapI RAATTY 3 cut(s) 476, 676, 728
XceI RCATGY 2 cut(s) 337, 688
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.