RLG00000015303

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000376
Physical Location & Seq
Forward (+)
64227042 .. 64229514
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015303

Sequence Viewer

Length: 840 bp
ATGGAGGAAGATAAGGTAGTGTGGGAGGTTCCTGCGGGGAAGGCTGCTGTGGAGGAGATTGCTCTAATGGCAATAGTTAATTCTGAGAAGACCACGGTGGCGGAGGAGACCGCCGTGGGGGAGGCTACTCCTATGAGTGTGGTTATTGTGGATCTTGGGGATGCCTCCTCTGCTGAAGCTCTTGTTAGTGGCAATGAGGGTGTATTTGTTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCACGTTTTTAAAGGCTCACACTTGGAAAGATGGATTTCGTGATTTTAGTAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACAAGAAACTTACTGAAACTTGTTGAAGATGTATTATCTCATGGGCTATATCACCCGCTCCACATTGATGGGTTTTTGAGCTTATGCAGTACTGAAAAAGACGTCGCATCCAATGATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGAGTTATCATAGACATTTATTTGATAAGGTGGAAGGAATTTTAGCTGCAAAGAATGCATCTGCTGTAGAAAGCATAGGAGTATTGTTTCACTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACTCCAAGTACCAAAATGATGGGGAAGAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAACGTCTATGATGTCTTCTGAGAGTCGTATTGTTGAAAAGAATTATTGCTCAACTAGTTTCAATCCAGGAACACGAAAGTCACTTCATGATTTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

280

Amino Acids

30.53

Weight (kDa)

5.47

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccBSI CCGCTC 1 cut(s) 418
AciI CCGC 4 cut(s) 35, 101, 111, 416
AclWI GGATC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 451, 655, 814
AfeI AGCGCT 1 cut(s) 642
AfiI CCNNNNNNNGG 2 cut(s) 117, 477
AgsI TTSAA 4 cut(s) 386, 684, 749, 775
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 2 cut(s) 352, 778
AluBI AGCT 5 cut(s) 179, 301, 441, 554, 625
AluI AGCT 5 cut(s) 179, 301, 441, 554, 625
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 159
Aor51HI AGCGCT 1 cut(s) 642
ApeKI GCWGC 2 cut(s) 44, 554
ApoI RAATTY 1 cut(s) 546
AspLEI GCGC 1 cut(s) 643
AsuHPI GGTGA 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 95, 720
BbvI GCAGC 2 cut(s) 31, 541
BccI CCATC 4 cut(s) 269, 422, 470, 658
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 354, 780
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 644
BisI GCNGC 2 cut(s) 45, 555
BlsI GCNGC 2 cut(s) 46, 556
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 354, 780
BmiI GGNNCC 2 cut(s) 30, 826
BmrFI CCNGG 2 cut(s) 354, 780
BmsI GCATC 5 cut(s) 151, 328, 337, 476, 575
BpiI GAAGAC 2 cut(s) 95, 720
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 254, 326
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 93, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 477
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 354, 780
BseDI CCNNGG 2 cut(s) 93, 114
BseGI GGATG 2 cut(s) 166, 467
BseLI CCNNNNNNNGG 2 cut(s) 117, 477
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 75, 723
BseRI GAGGAG 3 cut(s) 68, 119, 157
BseXI GCAGC 2 cut(s) 31, 541
BslI CCNNNNNNNGG 2 cut(s) 117, 477
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 568
Bso31I GGTCTC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 151, 610
BspACI CCGC 4 cut(s) 35, 101, 111, 416
BspCNI CTCAG 2 cut(s) 76, 724
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 2 cut(s) 30, 826
BspPI GGATC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 93, 114
BssMI GATC 2 cut(s) 151, 610
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 354, 780
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 665
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 2 cut(s) 325, 563
BstDEI CTNAG 2 cut(s) 84, 732
BstDSI CCRYGG 2 cut(s) 93, 114
BstF5I GGATG 2 cut(s) 166, 467
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 2 cut(s) 154, 613
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 151, 610
BstMWI GCNNNNNNNGC 8 cut(s) 41, 68, 170, 307, 316, 325, 563, 833
BstNI CCWGG 2 cut(s) 354, 780
BstSCI CCNGG 2 cut(s) 352, 778
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 31, 541
BstV2I GAAGAC 2 cut(s) 95, 720
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 3 cut(s) 341, 428, 664
BstYI RGATCY 1 cut(s) 151
BtgI CCRYGG 2 cut(s) 93, 114
BtsCI GGATG 2 cut(s) 166, 467
CciI TCATGA 1 cut(s) 799
CfoI GCGC 1 cut(s) 643
Csp6I GTAC 3 cut(s) 450, 654, 813
CviAII CATG 2 cut(s) 401, 800
CviQI GTAC 3 cut(s) 450, 654, 813
DdeI CTNAG 2 cut(s) 84, 732
DpnI GATC 2 cut(s) 153, 612
DpnII GATC 2 cut(s) 151, 610
DraI TTTAAA 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
EciI GGCGGA 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 101
Eco47III AGCGCT 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 352, 778
EcoT22I ATGCAT 1 cut(s) 568
FaeI CATG 2 cut(s) 404, 803
FaiI YATR 9 cut(s) 134, 402, 409, 445, 519, 584, 722, 801, 822
FatI CATG 2 cut(s) 400, 799
FauI CCCGC 2 cut(s) 28, 423
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 2 cut(s) 45, 555
FokI GGATG 2 cut(s) 173, 454
Fsp4HI GCNGC 2 cut(s) 45, 555
FspBI CTAG 1 cut(s) 768
GlaI GCGC 1 cut(s) 642
GluI GCNGC 2 cut(s) 45, 555
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 644
HhaI GCGC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 2 cut(s) 404, 803
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HinfI GANTC 4 cut(s) 491, 635, 646, 736
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 2 cut(s) 85, 733
Hpy188III TCNNGA 3 cut(s) 284, 334, 800
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 34, 536, 671
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 248, 462, 716
HpyCH4V TGCA 5 cut(s) 319, 328, 447, 557, 566
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 68, 170, 307, 316, 325, 563, 833
HpyF3I CTNAG 2 cut(s) 84, 732
HpySE526I ACGT 3 cut(s) 248, 462, 716
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 2 cut(s) 404, 803
HspAI GCGC 1 cut(s) 641
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 2 cut(s) 151, 610
LmnI GCTCC 3 cut(s) 306, 423, 824
LpnPI CCDG 7 cut(s) 45, 339, 347, 366, 521, 765, 792
Lsp1109I GCAGC 2 cut(s) 31, 541
LweI GCATC 5 cut(s) 151, 328, 337, 476, 575
MaeI CTAG 1 cut(s) 768
MaeII ACGT 3 cut(s) 248, 462, 716
MaeIII GTNAC 1 cut(s) 792
MalI GATC 2 cut(s) 153, 612
MbiI CCGCTC 1 cut(s) 418
MboI GATC 2 cut(s) 151, 610
MboII GAAGA 6 cut(s) 20, 100, 398, 682, 707, 720
MflI RGATCY 1 cut(s) 151
MluCI AATT 4 cut(s) 79, 215, 546, 754
MlyI GAGTC 2 cut(s) 640, 745
MmeI TCCRAC 1 cut(s) 338
Mph1103I ATGCAT 1 cut(s) 568
MseI TTAA 3 cut(s) 78, 254, 618
MslI CAYNNNNRTG 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 354, 780
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 354, 780
MwoI GCNNNNNNNGC 8 cut(s) 41, 68, 170, 307, 316, 325, 563, 833
NdeII GATC 2 cut(s) 151, 610
NlaIII CATG 2 cut(s) 404, 803
NlaIV GGNNCC 2 cut(s) 30, 826
NmuCI GTSAC 1 cut(s) 792
NsiI ATGCAT 1 cut(s) 568
PagI TCATGA 1 cut(s) 799
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 491, 635
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 2 cut(s) 46, 556
PleI GAGTC 2 cut(s) 640, 744
PpsI GAGTC 2 cut(s) 640, 744
Psp6I CCWGG 2 cut(s) 352, 778
PspGI CCWGG 2 cut(s) 352, 778
PspN4I GGNNCC 2 cut(s) 30, 826
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 3 cut(s) 451, 655, 814
RsaNI GTAC 3 cut(s) 450, 654, 813
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 3 cut(s) 78, 254, 618
SatI GCNGC 2 cut(s) 45, 555
Sau3AI GATC 2 cut(s) 151, 610
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 2 cut(s) 640, 745
ScrFI CCNGG 2 cut(s) 354, 780
SfaNI GCATC 5 cut(s) 151, 328, 337, 476, 575
SfcI CTRYAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 233, 305
SmoI CTYRAG 2 cut(s) 233, 305
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 4 cut(s) 79, 215, 546, 754
SsiI CCGC 4 cut(s) 35, 101, 111, 416
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 352, 778
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 3 cut(s) 251, 465, 719
TasI AATT 4 cut(s) 79, 215, 546, 754
TatI WGTACW 2 cut(s) 449, 812
TfiI GAWTC 2 cut(s) 491, 635
Tru1I TTAA 3 cut(s) 78, 254, 618
Tru9I TTAA 3 cut(s) 78, 254, 618
TseFI GTSAC 1 cut(s) 792
TseI GCWGC 2 cut(s) 44, 554
Tsp45I GTSAC 1 cut(s) 792
TspDTI ATGAA 2 cut(s) 693, 788
XapI RAATTY 1 cut(s) 546
XspI CTAG 1 cut(s) 768
ZraI GACGTC 1 cut(s) 463
ZrmI AGTACT 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.