Rh6BG025200

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000376
Physical Location & Seq
Reverse (-)
3601153 .. 3601400
248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG025200.1

Sequence Viewer

Length: 248 bp
ATGGCCGATTCTGGAGCTAACCCTAAACAGAGACAACCCAAGAAGAACAAGAAGAAGAGAAAGCAGAGCGGACCCCAAGAATCTGAAAGGCCACCCAAGACTAACCGCACCAATTCATCAGAGAACGAGAATGAACCACAAGACCAAAACTTTGAAGTTGGAAAAGCTGAAAAACCCAATCAAGGTGGTCCATGGAGGAACCTGGAGTTAATTCTGTCAATCCAGAACAGAGAGCTTGATCTTCACAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

82

Amino Acids

9.4

Weight (kDa)

9.63

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 2 cut(s) 69, 106
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 17, 167, 235
AluI AGCT 3 cut(s) 17, 167, 235
Alw26I GTCTC 1 cut(s) 25
AoxI GGCC 2 cut(s) 3, 89
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspS9I GGNCC 2 cut(s) 71, 188
AvaII GGWCC 2 cut(s) 71, 188
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 71, 188
BmgT120I GGNCC 2 cut(s) 71, 188
BmiI GGNNCC 2 cut(s) 73, 200
BmrFI CCNGG 1 cut(s) 203
BpmI CTGGAG 2 cut(s) 33, 224
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 182
BshFI GGCC 2 cut(s) 5, 91
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 5, 91
Bsp143I GATC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 2 cut(s) 69, 106
BspANI GGCC 2 cut(s) 5, 91
BspLI GGNNCC 2 cut(s) 73, 200
BsrBI CCGCTC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 191
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 5, 91
BtgI CCRYGG 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 71, 188
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 5, 17, 91, 167, 235
CviKI_1 RGCY 5 cut(s) 5, 17, 91, 167, 235
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 71, 188
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 195
FaiI YATR 1 cut(s) 193
FatI CATG 1 cut(s) 191
GsuI CTGGAG 2 cut(s) 33, 224
HaeIII GGCC 2 cut(s) 5, 91
Hin1II CATG 1 cut(s) 195
HinfI GANTC 2 cut(s) 8, 80
Hpy188I TCNGA 2 cut(s) 85, 121
Hpy188III TCNNGA 2 cut(s) 12, 223
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 188, 215, 236
MalI GATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 69
MboI GATC 1 cut(s) 238
MboII GAAGA 4 cut(s) 55, 64, 67, 233
MluCI AATT 2 cut(s) 112, 210
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 1 cut(s) 189
MseI TTAA 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 191
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 2 cut(s) 73, 200
PfeI GAWTC 2 cut(s) 8, 80
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 73, 200
PspPI GGNCC 2 cut(s) 71, 188
SaqAI TTAA 1 cut(s) 209
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 71, 188
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 19, 169, 187, 204, 237
SinI GGWCC 2 cut(s) 71, 188
Sse9I AATT 2 cut(s) 112, 210
SsiI CCGC 2 cut(s) 69, 106
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 191
TasI AATT 2 cut(s) 112, 210
TfiI GAWTC 2 cut(s) 8, 80
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 105, 147
VpaK11BI GGWCC 2 cut(s) 71, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.