Rorug05G0513500

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000376
Physical Location & Seq
Reverse (-)
69853220 .. 69855106
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0513500.1

Sequence Viewer

Length: 573 bp
ATGTCGACAGTCGACCTAATAATCACCTGCAGGACTCCGTTTGGGTACAAATTGGACTCCAATTGGCTCGAGCAGAGTTGCAATCGAAATTCTCTGTGGTTTTCCATAAGTGGAGAGTTTGTGACAGTGAGTGATGGAGGAGAGTGTAGGCGTGAGAGTGAGAAAGAGGATGAGAGGCTGTTCTGTTATGTAATGTACAGTTCGGGCTCGACGGGGAAGCCGAAAGGTGTTTGTGGCACTGAACAAGGTCTTTGGAATCGGTTTCTGTGGATGCAAGAATTGTATCCACTGAATGGAGAGGAGGTTTTGTTGTTCAAGATAGCAATAAGCTTTGTTGATCACTTTCAAGAATTTCTTAACGCTATTCTTACTGGTTCTGCTTTGGTTATACCTCCTTTCAATCAACTTAAACAGAATGTGTTCTCCATTGTGGATTTTCTACAGTCTTGGCTTCTCGAGATGGGAAGATTGTGCGTGACAACACTCTCGATGCACGGTTGGATGTTGTATTCAGTATTCTGTAAAAAACTTCCTGAGATCCGCATAAGGCTTTTCAATCAGGTTGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

190

Amino Acids

21.9

Weight (kDa)

5.46

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 52 - 137 5.3e-12 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 293
AccI GTMKAC 2 cut(s) 5, 12
AciI CCGC 1 cut(s) 541
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 2 cut(s) 88, 350
AfaI GTAC 2 cut(s) 47, 197
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 4 cut(s) 316, 347, 400, 556
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
AlwI GGATC 1 cut(s) 532
Ama87I CYCGRG 2 cut(s) 68, 455
ApoI RAATTY 2 cut(s) 88, 350
Asp700I GAANNNNTTC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 68, 455
BanII GRGCYC 1 cut(s) 209
BccI CCATC 2 cut(s) 128, 454
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 1 cut(s) 337
BfmI CTRYAG 2 cut(s) 28, 440
BfuAI ACCTGC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 294
BmeT110I CYCGRG 2 cut(s) 68, 455
BmsI GCATC 2 cut(s) 261, 480
BsaXI ACNNNNNCTCC 6 cut(s) 105, 135, 288, 293, 318, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 175, 276, 507
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 2 cut(s) 153, 314
BsiHKCI CYCGRG 2 cut(s) 68, 455
BslI CCNNNNNNNGG 1 cut(s) 293
BsoBI CYCGRG 2 cut(s) 68, 455
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 2 cut(s) 337, 537
BspACI CCGC 1 cut(s) 541
BspCNI CTCAG 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 376
BssMI GATC 2 cut(s) 337, 537
Bst4CI ACNGT 5 cut(s) 10, 127, 200, 444, 497
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 175, 276, 507
BstKTI GATC 2 cut(s) 340, 540
BstMBI GATC 2 cut(s) 337, 537
BstSFI CTRYAG 2 cut(s) 28, 440
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
BsuI GTATCC 1 cut(s) 294
BtsCI GGATG 3 cut(s) 175, 276, 507
BtsIMutI CAGTG 3 cut(s) 132, 237, 287
BveI ACCTGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 46, 196
CviJI RGCY 7 cut(s) 67, 178, 207, 220, 330, 451, 550
CviKI_1 RGCY 7 cut(s) 67, 178, 207, 220, 330, 451, 550
CviQI GTAC 2 cut(s) 46, 196
DdeI CTNAG 1 cut(s) 534
DpnI GATC 2 cut(s) 339, 539
DpnII GATC 2 cut(s) 337, 537
Eco24I GRGCYC 1 cut(s) 209
Eco88I CYCGRG 2 cut(s) 68, 455
EcoT38I GRGCYC 1 cut(s) 209
FaiI YATR 5 cut(s) 107, 189, 389, 545, 571
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 2 cut(s) 5, 12
FokI GGATG 3 cut(s) 182, 283, 514
FriOI GRGCYC 1 cut(s) 209
HincII GTYRAC 2 cut(s) 6, 13
HindII GTYRAC 2 cut(s) 6, 13
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 3 cut(s) 34, 56, 256
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 6, 13
Hpy188III TCNNGA 6 cut(s) 316, 347, 455, 457, 487, 533
Hpy8I GTNNAC 2 cut(s) 6, 13
Hpy99I CGWCG 1 cut(s) 214
HpyCH4III ACNGT 5 cut(s) 10, 127, 200, 444, 497
HpyCH4V TGCA 5 cut(s) 30, 81, 274, 493, 569
HpyF3I CTNAG 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 337, 537
LpnPI CCDG 5 cut(s) 16, 40, 357, 545, 546
LweI GCATC 2 cut(s) 261, 480
MaeIII GTNAC 2 cut(s) 121, 475
MalI GATC 2 cut(s) 339, 539
MboI GATC 2 cut(s) 337, 537
MboII GAAGA 1 cut(s) 477
MfeI CAATTG 1 cut(s) 61
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 5 cut(s) 50, 61, 88, 278, 350
MlyI GAGTC 2 cut(s) 28, 50
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 6 cut(s) 131, 160, 168, 292, 295, 402
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 357, 408
MunI CAATTG 1 cut(s) 61
NdeII GATC 2 cut(s) 337, 537
NmuCI GTSAC 2 cut(s) 121, 475
PaeR7I CTCGAG 2 cut(s) 68, 455
PaqCI CACCTGC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 293
PleI GAGTC 2 cut(s) 28, 50
PpsI GAGTC 2 cut(s) 28, 50
PspXI VCTCGAGB 1 cut(s) 68
PstI CTGCAG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 537
RsaI GTAC 2 cut(s) 47, 197
RsaNI GTAC 2 cut(s) 46, 196
SalI GTCGAC 2 cut(s) 4, 11
SaqAI TTAA 2 cut(s) 357, 408
Sau3AI GATC 2 cut(s) 337, 537
SbfI CCTGCAGG 1 cut(s) 32
SchI GAGTC 2 cut(s) 28, 50
SdaI CCTGCAGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 209
SetI ASST 8 cut(s) 18, 29, 229, 250, 306, 332, 394, 564
SfaNI GCATC 2 cut(s) 261, 480
SfcI CTRYAG 2 cut(s) 28, 440
Sfr274I CTCGAG 2 cut(s) 68, 455
SlaI CTCGAG 2 cut(s) 68, 455
SmlI CTYRAG 2 cut(s) 68, 455
SmoI CTYRAG 2 cut(s) 68, 455
Sse8387I CCTGCAGG 1 cut(s) 32
Sse9I AATT 5 cut(s) 50, 61, 88, 278, 350
SsiI CCGC 1 cut(s) 541
TaaI ACNGT 5 cut(s) 10, 127, 200, 444, 497
TaqI TCGA 7 cut(s) 5, 12, 69, 85, 209, 456, 488
TasI AATT 5 cut(s) 50, 61, 88, 278, 350
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 357, 408
Tru9I TTAA 2 cut(s) 357, 408
TscAI CASTG 3 cut(s) 132, 244, 294
TseFI GTSAC 2 cut(s) 121, 475
Tsp45I GTSAC 2 cut(s) 121, 475
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 3 cut(s) 132, 244, 294
Van91I CCANNNNNTGG 1 cut(s) 293
XapI RAATTY 2 cut(s) 88, 350
XhoI CTCGAG 2 cut(s) 68, 455
XmiI GTMKAC 2 cut(s) 5, 12
XmnI GAANNNNTTC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.