Rh6AG029100

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3527353 .. 3528155
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG029100.1

Sequence Viewer

Length: 531 bp
ATGCTATGGCTTGTGGATTTGAATAGTCGTATAAAGTCTTTTGAATATTTGATTGAAAATGTTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAAGAGGCAGCGGGACTCACTGGATTTATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCATGCCTCTATAAAGGATTTGAAGAGATTCCTCTCTATTTTAATCCATACTTCCCTTCCCTATGTAAGAAGCAGCTTCGGGGTGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGACATTGCATCAAATCTCATCACAATGCTTTATTGATTCCAGTCTGTATGAGCAAAGAGTAAGCATCTTTCAAAGATCAAATGGTGCTTCCCCTGACCCTCACGTGATGTACATGCACACACACAAACTTGTATCTTGCAAAATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

176

Amino Acids

20.31

Weight (kDa)

7.78

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 2 cut(s) 83, 113
AcuI CTGAAG 2 cut(s) 177, 392
AcvI CACGTG 1 cut(s) 484
AfaI GTAC 1 cut(s) 491
AgsI TTSAA 5 cut(s) 22, 44, 56, 274, 452
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 2 cut(s) 327, 362
AluI AGCT 2 cut(s) 327, 362
Alw21I GWGCWC 2 cut(s) 141, 348
ApeKI GCWGC 2 cut(s) 110, 324
Asp700I GAANNNNTTC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 246
BbrPI CACGTG 1 cut(s) 484
Bbv12I GWGCWC 2 cut(s) 141, 348
BbvI GCAGC 2 cut(s) 122, 336
BccI CCATC 1 cut(s) 127
BglII AGATCT 1 cut(s) 87
BisI GCNGC 2 cut(s) 111, 325
BlsI GCNGC 2 cut(s) 112, 326
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 2 cut(s) 397, 453
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BsaAI YACGTR 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 127, 420
Bse3DI GCAATG 2 cut(s) 197, 383
BseMI GCAATG 2 cut(s) 197, 383
BseNI ACTGG 2 cut(s) 127, 420
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 2 cut(s) 122, 336
BsgI GTGCAG 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 141, 348
BslFI GGGAC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 141, 251, 348
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 3 cut(s) 87, 160, 455
BspACI CCGC 2 cut(s) 83, 113
BspLI GGNNCC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 2 cut(s) 197, 383
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 2 cut(s) 127, 420
BssMI GATC 3 cut(s) 87, 160, 455
Bst6I CTCTTC 2 cut(s) 97, 269
BstAUI TGTACA 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 484
BstKTI GATC 3 cut(s) 90, 163, 458
BstMBI GATC 3 cut(s) 87, 160, 455
BstNSI RCATGY 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 122, 336
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 490
CviAII CATG 5 cut(s) 239, 243, 254, 356, 493
CviJI RGCY 4 cut(s) 10, 327, 362, 370
CviKI_1 RGCY 4 cut(s) 10, 327, 362, 370
CviQI GTAC 1 cut(s) 490
DpnI GATC 3 cut(s) 89, 162, 457
DpnII GATC 3 cut(s) 87, 160, 455
Eam1104I CTCTTC 2 cut(s) 97, 269
EarI CTCTTC 2 cut(s) 97, 269
Eco57I CTGAAG 2 cut(s) 177, 392
Eco72I CACGTG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 5 cut(s) 242, 246, 257, 359, 496
FaqI GGGAC 1 cut(s) 129
FatI CATG 5 cut(s) 238, 242, 253, 355, 492
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 111, 325
Fsp4HI GCNGC 2 cut(s) 111, 325
GluI GCNGC 2 cut(s) 111, 325
Hin1II CATG 5 cut(s) 242, 246, 257, 359, 496
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 3 cut(s) 117, 279, 416
Hpy166II GTNNAC 2 cut(s) 64, 187
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 64, 187
HpyAV CCTTC 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 6 cut(s) 76, 209, 242, 388, 496, 519
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 5 cut(s) 242, 246, 257, 359, 496
Kzo9I GATC 3 cut(s) 87, 160, 455
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 56, 108, 352, 433, 486
Lsp1109I GCAGC 2 cut(s) 122, 336
LweI GCATC 2 cut(s) 397, 453
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 89, 162, 457
MboI GATC 3 cut(s) 87, 160, 455
MboII GAAGA 4 cut(s) 84, 170, 286, 385
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 3 cut(s) 141, 251, 348
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 7 cut(s) 93, 100, 152, 261, 268, 293, 489
Mph1103I ATGCAT 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 2 cut(s) 293, 529
MslI CAYNNNNRTG 3 cut(s) 182, 214, 403
MspA1I CMGCKG 1 cut(s) 113
NdeII GATC 3 cut(s) 87, 160, 455
NlaIII CATG 5 cut(s) 242, 246, 257, 359, 496
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 496
OliI CACNNNNGTG 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 279, 416
PkrI GCNGC 2 cut(s) 112, 326
PleI GAGTC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 484
PmlI CACGTG 1 cut(s) 484
PpsI GAGTC 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 484
PspCI CACGTG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 3 cut(s) 182, 214, 403
SaqAI TTAA 2 cut(s) 293, 529
SatI GCNGC 2 cut(s) 111, 325
Sau3AI GATC 3 cut(s) 87, 160, 455
SchI GAGTC 1 cut(s) 111
SduI GDGCHC 3 cut(s) 141, 251, 348
SetI ASST 4 cut(s) 144, 329, 364, 486
SfaNI GCATC 2 cut(s) 397, 453
SmiMI CAYNNNNRTG 3 cut(s) 182, 214, 403
SsiI CCGC 2 cut(s) 83, 113
SspI AATATT 4 cut(s) 47, 174, 235, 525
TaiI ACGT 1 cut(s) 486
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 2 cut(s) 279, 416
Tru1I TTAA 2 cut(s) 293, 529
Tru9I TTAA 2 cut(s) 293, 529
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 110, 324
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 166, 227, 372
TspRI CASTG 1 cut(s) 127
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.