MD10G1117300.v1.1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000376
Physical Location & Seq
Forward (+)
19504404 .. 19505472
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1117300.v1.1.491

Sequence Viewer

Length: 762 bp
ATGACTGACTGGACCAATGGGGGGTATTTTTCTTGGATCAAGCAACCTTCAGCTTCTCTTCTTGTTGTTATTCAATCCATTTCAAATATCTATTGTAAAAACTGTGCGACAGATTCTTGGTCTCTGACTTATGTAATGCATGCTATGGCTGTTAGAAGGCTTGTTGATTTGAATAGGCATATAAAGTCTTCTGAGTATGTGATGCAAAATAATAAAAATCTGGTGCAAGTCAGGTTGCTTGATGATGCTGGCTTGTCAAGGTGTCATAAAAGAATAAAAAAACTGGAAAGGCACATCTCTACCTTGAGGGAAGAGGCTACAGGTCTTACTGGTTTTATGATGGAGCACCTATCATTAGTGTCGGAATATCAACAGCCAATCTTCACTCCGGATGATACAAGCTGTAATAAAATGGTTGCCTATGAAAGTGATGAATGGGATTTCAATTTTTCTGCTTTGAACAAGAAGTCATTACCAACTGCAATTTGGTGGATTCTTTGCCACAATATTGATACCCATGTGACTAAAAAGAATTTGAAGACATTTATTTCTCTTTTAATCCAAACTTCCCTTCCTTGTGTAAGAAGCAGCTTCGGGGTGGTTAGAGAGCACAATACTCATGCTGACAGGAATAGGATGAAGAAAGTAACCTTGCACCAAATCTCATCACAATGCTTCATCGACTCCATTCTGTATGAGCAAAAGAGTATTTTGCATCGAGTTTTTGCCATGCATTGGAGAAATCGACAATACAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

254

Amino Acids

29.52

Weight (kDa)

9.24

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 735
AccIII TCCGGA 1 cut(s) 388
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 21, 735
AgsI TTSAA 6 cut(s) 74, 84, 172, 445, 460, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 3 cut(s) 53, 402, 591
AluI AGCT 3 cut(s) 53, 402, 591
Alw21I GWGCWC 2 cut(s) 348, 612
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 588
ApoI RAATTY 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 12
AvaII GGWCC 1 cut(s) 12
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BbsI GAAGAC 2 cut(s) 180, 545
Bbv12I GWGCWC 2 cut(s) 348, 612
BbvI GCAGC 1 cut(s) 600
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 1 cut(s) 589
BlsI GCNGC 1 cut(s) 590
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmsI GCATC 3 cut(s) 192, 235, 724
BpiI GAAGAC 2 cut(s) 180, 545
BpuEI CTTGAG 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 735
Bse1I ACTGG 3 cut(s) 14, 288, 334
BseAI TCCGGA 1 cut(s) 388
BseGI GGATG 2 cut(s) 397, 642
BseLI CCNNNNNNNGG 2 cut(s) 21, 735
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 3 cut(s) 14, 288, 334
BseXI GCAGC 1 cut(s) 600
BsiHKAI GWGCWC 2 cut(s) 348, 612
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 21, 735
BsmAI GTCTC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 348, 612
Bsp13I TCCGGA 1 cut(s) 388
Bsp143I GATC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 388
BspHI TCATGA 1 cut(s) 758
BspPI GGATC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 3 cut(s) 14, 288, 334
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 63, 306
BstC8I GCNNGC 2 cut(s) 141, 250
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 397, 642
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 600
BstV2I GAAGAC 2 cut(s) 180, 545
BtsCI GGATG 2 cut(s) 397, 642
Cac8I GCNNGC 2 cut(s) 141, 250
CciI TCATGA 1 cut(s) 758
Cfr13I GGNCC 1 cut(s) 12
CviAII CATG 5 cut(s) 140, 518, 620, 730, 759
CviJI RGCY 8 cut(s) 53, 149, 160, 252, 317, 376, 402, 591
CviKI_1 RGCY 8 cut(s) 53, 149, 160, 252, 317, 376, 402, 591
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 63, 306
EarI CTCTTC 2 cut(s) 63, 306
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 33
EcoT22I ATGCAT 2 cut(s) 141, 735
FaeI CATG 5 cut(s) 143, 521, 623, 733, 762
FatI CATG 5 cut(s) 139, 517, 619, 729, 758
Fnu4HI GCNGC 1 cut(s) 589
FokI GGATG 2 cut(s) 404, 649
Fsp4HI GCNGC 1 cut(s) 589
GluI GCNGC 1 cut(s) 589
HapII CCGG 1 cut(s) 389
Hin1II CATG 5 cut(s) 143, 521, 623, 733, 762
HinfI GANTC 3 cut(s) 113, 493, 683
HpaII CCGG 1 cut(s) 389
Hpy188I TCNGA 3 cut(s) 126, 193, 364
Hpy188III TCNNGA 2 cut(s) 389, 759
HpyAV CCTTC 3 cut(s) 57, 150, 581
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 7 cut(s) 139, 205, 226, 482, 655, 715, 733
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 5 cut(s) 143, 521, 623, 733, 762
Kpn2I TCCGGA 1 cut(s) 388
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 8 cut(s) 206, 217, 234, 269, 306, 315, 402, 613
Lsp1109I GCAGC 1 cut(s) 600
LweI GCATC 3 cut(s) 192, 235, 724
MaeIII GTNAC 2 cut(s) 520, 646
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 6 cut(s) 50, 180, 323, 373, 550, 652
MhlI GDGCHC 2 cut(s) 348, 612
MluCI AATT 4 cut(s) 445, 483, 532, 754
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 2 cut(s) 300, 307
Mph1103I ATGCAT 2 cut(s) 141, 735
MroI TCCGGA 1 cut(s) 388
MseI TTAA 1 cut(s) 557
MslI CAYNNNNRTG 1 cut(s) 670
MspI CCGG 1 cut(s) 389
NdeII GATC 1 cut(s) 36
NlaIII CATG 5 cut(s) 143, 521, 623, 733, 762
NmuCI GTSAC 1 cut(s) 520
NsiI ATGCAT 2 cut(s) 141, 735
NspI RCATGY 1 cut(s) 143
PaeI GCATGC 1 cut(s) 143
PagI TCATGA 1 cut(s) 758
PfeI GAWTC 2 cut(s) 113, 493
PflMI CCANNNNNTGG 1 cut(s) 735
PkrI GCNGC 1 cut(s) 590
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PspPI GGNCC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 670
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 1 cut(s) 589
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 677
SduI GDGCHC 2 cut(s) 348, 612
SfaNI GCATC 3 cut(s) 192, 235, 724
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 670
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SphI GCATGC 1 cut(s) 143
Sse9I AATT 4 cut(s) 445, 483, 532, 754
SspI AATATT 1 cut(s) 508
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 681, 718, 745
TasI AATT 4 cut(s) 445, 483, 532, 754
TfiI GAWTC 2 cut(s) 113, 493
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 5 cut(s) 438, 447, 653, 667, 747
Van91I CCANNNNNTGG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 532
XceI RCATGY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
Zsp2I ATGCAT 2 cut(s) 141, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.