Rh6DG024500

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Reverse (-)
2215673 .. 2216590
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG024500.1

Sequence Viewer

Length: 618 bp
ATGACGTGTGCTGGAAGTGAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGGACGCAATTTGATTGAGGTTAAAAAATACATTCAGAGGTTAATTGCCTGCATGTTCAATGTTATTCTGCATCTGCAGAGTCCACTAATCTTCTATGAGAGACTCAATCAGAGTAAAGATGATAGTGATCCAGATCCAGGAACAGTCATTCTTATGTGTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTACGTATACCTTCAGCACTTTTTCAAGATTTCCATCTGTTAGAACATTCTAAATGTCCTGTTCCAAATGATTCTTCAACAAGTCCAAATAACCAACCATCCGACCCAGTAGCAAGTGTACATGTCTCTGGTATAGATAGGCAATACTCAATCGGCCTATATTCTACTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGGTATATATATTCATTTGGTATTAAAAATTTCATAGTAAAGACTTGCGAAGCGTGCAATAGACTATTAAGCTTAGGCCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

205

Amino Acids

22.87

Weight (kDa)

7.61

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 331
AclWI GGATC 3 cut(s) 215, 221, 309
AcsI RAATTY 3 cut(s) 83, 270, 559
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 2 cut(s) 261, 444
AfiI CCNNNNNNNGG 1 cut(s) 230
AflIII ACRYGT 2 cut(s) 5, 445
AgsI TTSAA 4 cut(s) 42, 151, 350, 402
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AluBI AGCT 1 cut(s) 603
AluI AGCT 1 cut(s) 603
Alw26I GTCTC 2 cut(s) 187, 454
AlwI GGATC 3 cut(s) 215, 221, 309
AoxI GGCC 2 cut(s) 478, 607
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 3 cut(s) 83, 270, 559
Asp700I GAANNNNTTC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 482
BccI CCATC 3 cut(s) 17, 366, 430
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 187, 454
BfmI CTRYAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 3 cut(s) 59, 172, 532
BmuI ACTGGG 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 3 cut(s) 219, 225, 357
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 267, 431
Bse8I GATNNNNATC 3 cut(s) 219, 225, 357
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 422
BseJI GATNNNNATC 3 cut(s) 219, 225, 357
BseLI CCNNNNNNNGG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 267, 431
BseXI GCAGC 1 cut(s) 482
BshFI GGCC 2 cut(s) 480, 609
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 187, 454
BsnI GGCC 2 cut(s) 480, 609
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 3 cut(s) 220, 226, 301
BspANI GGCC 2 cut(s) 480, 609
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 3 cut(s) 215, 221, 309
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 2 cut(s) 267, 431
BssMI GATC 3 cut(s) 220, 226, 301
BssNAI GTATAC 1 cut(s) 332
Bst1107I GTATAC 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 142, 281, 285, 586
BstDEI CTNAG 1 cut(s) 604
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 3 cut(s) 223, 229, 304
BstMAI GTCTC 2 cut(s) 187, 454
BstMBI GATC 3 cut(s) 220, 226, 301
BstMWI GCNNNNNNNGC 2 cut(s) 63, 585
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 4 cut(s) 148, 287, 314, 449
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 167
BstSNI TACGTA 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 482
BstX2I RGATCY 2 cut(s) 226, 301
BstYI RGATCY 2 cut(s) 226, 301
BstZ17I GTATAC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 480, 609
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 4 cut(s) 142, 281, 285, 586
CseI GACGC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 260, 443
CviAII CATG 4 cut(s) 145, 284, 311, 446
CviJI RGCY 3 cut(s) 480, 603, 609
CviKI_1 RGCY 3 cut(s) 480, 603, 609
CviQI GTAC 2 cut(s) 260, 443
DdeI CTNAG 1 cut(s) 604
DpnI GATC 3 cut(s) 222, 228, 303
DpnII GATC 3 cut(s) 220, 226, 301
Eco105I TACGTA 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 4 cut(s) 148, 287, 314, 449
FatI CATG 4 cut(s) 144, 283, 310, 445
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 1 cut(s) 496
GluI GCNGC 1 cut(s) 496
HaeIII GGCC 2 cut(s) 480, 609
HgaI GACGC 1 cut(s) 105
Hin1II CATG 4 cut(s) 148, 287, 314, 449
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 3 cut(s) 172, 195, 395
Hpy166II GTNNAC 4 cut(s) 176, 256, 332, 443
Hpy188I TCNGA 3 cut(s) 129, 204, 427
Hpy188III TCNNGA 4 cut(s) 80, 93, 224, 350
Hpy8I GTNNAC 4 cut(s) 176, 256, 332, 443
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 3 cut(s) 5, 258, 328
HpyCH4V TGCA 7 cut(s) 50, 144, 163, 169, 287, 508, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 585
HpyF3I CTNAG 1 cut(s) 604
HpySE526I ACGT 3 cut(s) 5, 258, 328
Hsp92II CATG 4 cut(s) 148, 287, 314, 449
Kzo9I GATC 3 cut(s) 220, 226, 301
Lsp1109I GCAGC 1 cut(s) 482
LweI GCATC 3 cut(s) 59, 172, 532
MaeII ACGT 3 cut(s) 5, 258, 328
MaeIII GTNAC 1 cut(s) 324
MalI GATC 3 cut(s) 222, 228, 303
MboI GATC 3 cut(s) 220, 226, 301
MboII GAAGA 4 cut(s) 30, 32, 175, 390
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 2 cut(s) 226, 301
MluCI AATT 6 cut(s) 42, 83, 100, 135, 270, 559
MlyI GAGTC 2 cut(s) 181, 189
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 3 cut(s) 20, 103, 123
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 4 cut(s) 114, 134, 555, 599
MslI CAYNNNNRTG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 63, 585
NdeII GATC 3 cut(s) 220, 226, 301
NlaIII CATG 4 cut(s) 148, 287, 314, 449
NspI RCATGY 4 cut(s) 148, 287, 314, 449
PaeI GCATGC 1 cut(s) 287
PciI ACATGT 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 395
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 2 cut(s) 180, 189
PpsI GAGTC 2 cut(s) 180, 189
Ppu21I YACGTR 1 cut(s) 329
PscI ACATGT 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PstI CTGCAG 1 cut(s) 171
PsuI RGATCY 2 cut(s) 226, 301
RsaI GTAC 2 cut(s) 261, 444
RsaNI GTAC 2 cut(s) 260, 443
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 4 cut(s) 114, 134, 555, 599
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 3 cut(s) 220, 226, 301
SchI GAGTC 2 cut(s) 181, 189
ScrFI CCNGG 1 cut(s) 231
SetI ASST 9 cut(s) 8, 36, 114, 134, 261, 331, 337, 536, 605
SfaNI GCATC 3 cut(s) 59, 172, 532
SfcI CTRYAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 329
SphI GCATGC 1 cut(s) 287
Sse9I AATT 6 cut(s) 42, 83, 100, 135, 270, 559
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 3 cut(s) 8, 261, 331
TasI AATT 6 cut(s) 42, 83, 100, 135, 270, 559
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 4 cut(s) 114, 134, 555, 599
Tru9I TTAA 4 cut(s) 114, 134, 555, 599
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 2 cut(s) 534, 553
XapI RAATTY 3 cut(s) 83, 270, 559
XceI RCATGY 4 cut(s) 148, 287, 314, 449
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.