MD10G1117400.v1.1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000376
Physical Location & Seq
Forward (+)
19505474 .. 19506403
930 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1117400.v1.1.491

Sequence Viewer

Length: 255 bp
ATGAAATTTACAGCTTGCCGGAGTTTACTTAATCTTTTGTGCCACATGCCAAAAGGTCATTTGACTTCAAAATCAATTTCACTTTATGTGTCTTCTATTCTCAACCTTGAAAGGCTTCTTGTTGGCGGCTTATTAGATTGTCAGAATGCTTTGAACTCACATCATTATCACGAGCTCTTCAGATTGTTTGTGTCTTGTCATAAGGCCTTAAAACATGTAATTCTGGCTTGTGAAGAGGAGACAGTAGCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

85

Amino Acids

9.45

Weight (kDa)

8.35

Isoelectric Point (pI)

64.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 3 cut(s) 69, 110, 154
AluBI AGCT 3 cut(s) 14, 175, 248
AluI AGCT 3 cut(s) 14, 175, 248
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 182, 228
BstC8I GCNNGC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 233
BstNSI RCATGY 2 cut(s) 49, 218
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 16
CviAII CATG 2 cut(s) 46, 215
CviJI RGCY 7 cut(s) 14, 115, 129, 175, 206, 227, 248
CviKI_1 RGCY 7 cut(s) 14, 115, 129, 175, 206, 227, 248
Eam1104I CTCTTC 2 cut(s) 182, 228
EarI CTCTTC 2 cut(s) 182, 228
Ecl136II GAGCTC 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 2 cut(s) 49, 218
FaiI YATR 4 cut(s) 47, 87, 201, 216
FatI CATG 2 cut(s) 45, 214
Fnu4HI GCNGC 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 19
Hin1II CATG 2 cut(s) 49, 218
HpaII CCGG 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 144, 182
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 244
Hsp92II CATG 2 cut(s) 49, 218
LguI GCTCTTC 1 cut(s) 182
LpnPI CCDG 2 cut(s) 32, 209
MaeI CTAG 1 cut(s) 249
MboII GAAGA 3 cut(s) 84, 169, 245
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 5, 75, 219
MnlI CCTC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 3 cut(s) 30, 209, 253
MspI CCGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 49, 218
NspI RCATGY 2 cut(s) 49, 218
PceI AGGCCT 1 cut(s) 206
PciI ACATGT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 182
PctI GAATGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 128
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 3 cut(s) 30, 209, 253
SatI GCNGC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 16, 58, 108, 177, 250
Sse9I AATT 3 cut(s) 5, 75, 219
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 177
StuI AGGCCT 1 cut(s) 206
TaaI ACNGT 1 cut(s) 244
TasI AATT 3 cut(s) 5, 75, 219
TauI GCSGC 1 cut(s) 129
Tru1I TTAA 3 cut(s) 30, 209, 253
Tru9I TTAA 3 cut(s) 30, 209, 253
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 5
XceI RCATGY 2 cut(s) 49, 218
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.