Rh6CG020300

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Forward (+)
1925337 .. 1927320
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG020300.1

Sequence Viewer

Length: 834 bp
ATGAGCAAAAATTTGTCGATCCGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGCGACTTTCCATCCGGCAATGTTAAATTCAAATCATCACCTAATTGGCCGAATGTTTTAAGTGATTTAGAGAACATACCATTGCTTATTTCCTGCAGCAAACTCAATGTATTTGACTGTTCCTCAGCCTCAAGTTGCAAGGGACATAACTCCCAACCATCTACCATCATGAAATTTACAGCTTGTCAGAGTTTGCTTAATCTTTTGAGGTGTATGCTAAAAGGTCATTTGGACTTGAGATCATTTTCATGTTATGTGTCATCTATTCTCAACCTCAAAAGGATTGTTGTTGGCGGCTCATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTTTTCAGATTTCAAACCTCAGACACTCGAGTACTCTTTGAGGATTTATTTCCTGTTTCATGGCTTTACAAGTCAGTGCGTATGGTTGCTGCTTCAAGAGTCATTCTCAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAGTATAATCATGCTGTTCGTTTCCTTGAGATTGCTGAGCTGAACTCTGGATCTGCTCAAGAACAGAGAAGTTTATTGAATTCGTCCGATTATATTGAAGCCTGGAAAAGTAAGTCAGGCTACAATTCAGATTTGTTGGCTGCAGAGAAGATTGTGCCGGAAAACAATGATGCTGACACTAATATGTCATGTGGTGGACTGCAGGATGAATCGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

277

Amino Acids

31.58

Weight (kDa)

8.34

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AciI CCGC 2 cut(s) 22, 375
AclWI GGATC 3 cut(s) 13, 585, 673
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 4 cut(s) 10, 107, 254, 694
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 5 cut(s) 112, 437, 519, 694, 713
AjnI CCWGG 1 cut(s) 716
AluBI AGCT 3 cut(s) 263, 424, 655
AluI AGCT 3 cut(s) 263, 424, 655
AlwI GGATC 3 cut(s) 13, 585, 673
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 177, 512, 755
ApoI RAATTY 4 cut(s) 10, 107, 254, 694
AsuHPI GGTGA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 450
BbvCI CCTCAGC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 189, 499, 742
BccI CCATC 3 cut(s) 100, 247, 254
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 718
BfmI CTRYAG 3 cut(s) 175, 756, 815
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 4 cut(s) 178, 376, 513, 756
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 4 cut(s) 179, 377, 514, 757
BmcAI AGTACT 1 cut(s) 456
Bme1390I CCNGG 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 718
BmsI GCATC 1 cut(s) 775
BplI GAGNNNNNCTC 4 cut(s) 513, 545, 644, 676
Bpu10I CCTNAGC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 651
BpuEI CTTGAG 4 cut(s) 196, 337, 657, 662
BsaBI GATNNNNATC 1 cut(s) 540
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse3DI GCAATG 2 cut(s) 106, 161
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 92, 826
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 2 cut(s) 106, 161
BseMII CTCAG 3 cut(s) 219, 456, 642
BseXI GCAGC 3 cut(s) 189, 499, 742
BshFI GGCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 2 cut(s) 96, 773
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 450
Bsp143I GATC 5 cut(s) 18, 320, 561, 577, 665
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 2 cut(s) 22, 375
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 3 cut(s) 218, 455, 643
BspHI TCATGA 2 cut(s) 249, 553
BspMAI CTGCAG 3 cut(s) 179, 760, 819
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 3 cut(s) 13, 585, 673
BsrDI GCAATG 2 cut(s) 106, 161
BssMI GATC 5 cut(s) 18, 320, 561, 577, 665
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 205, 442, 651
BstF5I GGATG 2 cut(s) 92, 826
BstKTI GATC 5 cut(s) 21, 323, 564, 580, 668
BstMBI GATC 5 cut(s) 18, 320, 561, 577, 665
BstNI CCWGG 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 716
BstSFI CTRYAG 3 cut(s) 175, 756, 815
BstV1I GCAGC 3 cut(s) 189, 499, 742
BstX2I RGATCY 1 cut(s) 665
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 92, 826
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 15
CciI TCATGA 2 cut(s) 249, 553
Csp6I GTAC 1 cut(s) 455
CviAII CATG 6 cut(s) 250, 330, 483, 554, 626, 804
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 3 cut(s) 205, 442, 651
DpnI GATC 5 cut(s) 20, 322, 563, 579, 667
DpnII GATC 5 cut(s) 18, 320, 561, 577, 665
EaeI YGGCCR 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 450
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 716
FaeI CATG 6 cut(s) 253, 333, 486, 557, 629, 807
FaqI GGGAC 1 cut(s) 237
FatI CATG 6 cut(s) 249, 329, 482, 553, 625, 803
Fnu4HI GCNGC 4 cut(s) 178, 376, 513, 756
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 4 cut(s) 178, 376, 513, 756
GluI GCNGC 4 cut(s) 178, 376, 513, 756
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 96, 773
Hin1II CATG 6 cut(s) 253, 333, 486, 557, 629, 807
HinfI GANTC 2 cut(s) 522, 824
HpaII CCGG 2 cut(s) 96, 773
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 812
Hpy188I TCNGA 7 cut(s) 270, 393, 431, 445, 600, 703, 745
Hpy188III TCNNGA 5 cut(s) 250, 519, 554, 663, 674
Hpy8I GTNNAC 1 cut(s) 812
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 6 cut(s) 35, 53, 177, 219, 758, 817
HpyF3I CTNAG 3 cut(s) 205, 442, 651
Hsp92II CATG 6 cut(s) 253, 333, 486, 557, 629, 807
Kzo9I GATC 5 cut(s) 18, 320, 561, 577, 665
Lsp1109I GCAGC 3 cut(s) 189, 499, 742
LweI GCATC 1 cut(s) 775
MalI GATC 5 cut(s) 20, 322, 563, 579, 667
MboI GATC 5 cut(s) 18, 320, 561, 577, 665
MboII GAAGA 1 cut(s) 775
MflI RGATCY 1 cut(s) 665
MluCI AATT 6 cut(s) 10, 107, 124, 254, 694, 739
MlyI GAGTC 1 cut(s) 531
MnlI CCTC 7 cut(s) 33, 214, 220, 282, 365, 451, 457
MseI TTAA 5 cut(s) 105, 140, 279, 572, 605
MslI CAYNNNNRTG 2 cut(s) 328, 797
MspI CCGG 2 cut(s) 96, 773
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 718
NdeII GATC 5 cut(s) 18, 320, 561, 577, 665
NlaIII CATG 6 cut(s) 253, 333, 486, 557, 629, 807
PaeR7I CTCGAG 1 cut(s) 450
PagI TCATGA 2 cut(s) 249, 553
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 824
PkrI GCNGC 4 cut(s) 179, 377, 514, 757
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 716
PspGI CCWGG 1 cut(s) 716
PspXI VCTCGAGB 1 cut(s) 450
PstI CTGCAG 3 cut(s) 179, 760, 819
PsuI RGATCY 1 cut(s) 665
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
RseI CAYNNNNRTG 2 cut(s) 328, 797
SaqAI TTAA 5 cut(s) 105, 140, 279, 572, 605
SatI GCNGC 4 cut(s) 178, 376, 513, 756
Sau3AI GATC 5 cut(s) 18, 320, 561, 577, 665
ScaI AGTACT 1 cut(s) 456
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 1 cut(s) 718
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 3 cut(s) 175, 756, 815
Sfr274I CTCGAG 1 cut(s) 450
SlaI CTCGAG 1 cut(s) 450
SmiMI CAYNNNNRTG 2 cut(s) 328, 797
SmlI CTYRAG 5 cut(s) 211, 316, 450, 641, 672
SmoI CTYRAG 5 cut(s) 211, 316, 450, 641, 672
Sse9I AATT 6 cut(s) 10, 107, 124, 254, 694, 739
SsiI CCGC 2 cut(s) 22, 375
StyD4I CCNGG 1 cut(s) 716
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 17, 451
TasI AATT 6 cut(s) 10, 107, 124, 254, 694, 739
TatI WGTACW 1 cut(s) 454
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 1 cut(s) 824
Tru1I TTAA 5 cut(s) 105, 140, 279, 572, 605
Tru9I TTAA 5 cut(s) 105, 140, 279, 572, 605
TscAI CASTG 1 cut(s) 504
TseI GCWGC 3 cut(s) 177, 512, 755
TspDTI ATGAA 6 cut(s) 67, 266, 318, 390, 471, 542
TspRI CASTG 1 cut(s) 504
XapI RAATTY 4 cut(s) 10, 107, 254, 694
XhoI CTCGAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.