Rh6AG026400

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3244688 .. 3248448
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG026400.1

Sequence Viewer

Length: 939 bp
ATGGTTATAGCGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGACATTGCATCAGATCTCATCACTTATTGATTCCAGTCTGCATGAGCAAAAATTTGTCCGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGTGACTTTCCATCCGGCAATGTTAAATTCAAACCATCACCTAATTGGCCGAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCTGCAGCAAACTCAATGTATTTGATTGTTCCTCAGCCTCAAGTTGCAAGCTTTACAAGTCGGTGCATATGGTTGCTGAGCTTCAAGGGTCATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTAGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCTAATCATGCTATTCGTTTCCTTGAGGTTGCTGAGCTGAACTCTGGATCTTCTCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAATATTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGGAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGTTTTAGTGGGTTTTTATGGGACCTAGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCTGAACTCAACAAGTCAAGCTACAATTTAGATTTGTTGGGTGCAGAGAAGATTGTGCAGGAAGACAATGATGCTGACACTGATATGGCATGTGGTGGACTGCAGGATGAATCTGCAGTTGCAGTGACGTGCAGTTGCAGTAATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

312

Amino Acids

34.93

Weight (kDa)

6.15

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 99
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 408, 496
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 4 cut(s) 98, 191, 517, 655
AcuI CTGAAG 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 139
AflII CTTAAG 1 cut(s) 223
AgsI TTSAA 7 cut(s) 196, 341, 517, 536, 574, 661, 782
AjiI CACGTC 1 cut(s) 918
AjnI CCWGG 1 cut(s) 539
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 6 cut(s) 29, 307, 337, 478, 758, 810
AluI AGCT 6 cut(s) 29, 307, 337, 478, 758, 810
AlwI GGATC 2 cut(s) 408, 496
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 4 cut(s) 98, 191, 517, 655
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 858
BbvCI CCTCAGC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 273
BccI CCATC 3 cut(s) 184, 208, 728
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 541
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 3 cut(s) 259, 890, 903
BfrI CTTAAG 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 99
BglII AGATCT 2 cut(s) 60, 588
BisI GCNGC 1 cut(s) 262
BlpI GCTNAGC 2 cut(s) 333, 474
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 541
Bme18I GGWCC 1 cut(s) 706
BmgBI CACGTC 1 cut(s) 918
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 707
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 4 cut(s) 64, 573, 637, 850
BpiI GAAGAC 1 cut(s) 858
BplI GAGNNNNNCTC 2 cut(s) 467, 499
Bpu10I CCTNAGC 1 cut(s) 289
Bpu1102I GCTNAGC 2 cut(s) 333, 474
BpuEI CTTGAG 3 cut(s) 280, 480, 485
BsaBI GATNNNNATC 2 cut(s) 363, 587
BsaXI ACNNNNNCTCC 4 cut(s) 627, 657, 730, 760
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 50, 190
Bse8I GATNNNNATC 2 cut(s) 363, 587
BseBI CCWGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 176, 901
BseJI GATNNNNATC 2 cut(s) 363, 587
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 2 cut(s) 50, 190
BseMII CTCAG 3 cut(s) 303, 324, 465
BseNI ACTGG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 273
BsgI GTGCAG 2 cut(s) 852, 866
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 6 cut(s) 60, 384, 400, 488, 588, 723
Bsp1720I GCTNAGC 2 cut(s) 333, 474
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 3 cut(s) 302, 325, 466
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 707
BspMAI CTGCAG 3 cut(s) 263, 894, 907
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 408, 496
BspTI CTTAAG 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 50, 190
BsrI ACTGG 1 cut(s) 81
BssMI GATC 6 cut(s) 60, 384, 400, 488, 588, 723
Bst2UI CCWGG 1 cut(s) 541
BstAFI CTTAAG 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 305, 715
BstDEI CTNAG 6 cut(s) 289, 333, 388, 474, 564, 759
BstF5I GGATG 2 cut(s) 176, 901
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 6 cut(s) 63, 387, 403, 491, 591, 726
BstMBI GATC 6 cut(s) 60, 384, 400, 488, 588, 723
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 2 cut(s) 717, 882
BstSCI CCNGG 1 cut(s) 539
BstSFI CTRYAG 3 cut(s) 259, 890, 903
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 3 cut(s) 60, 488, 588
BstYI RGATCY 3 cut(s) 60, 488, 588
BsuRI GGCC 1 cut(s) 214
BtrI CACGTC 1 cut(s) 918
BtsCI GGATG 2 cut(s) 176, 901
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 3 cut(s) 172, 867, 918
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 305, 715
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 706
CviAII CATG 6 cut(s) 23, 89, 377, 449, 714, 879
DdeI CTNAG 6 cut(s) 289, 333, 388, 474, 564, 759
DpnI GATC 6 cut(s) 62, 386, 402, 490, 590, 725
DpnII GATC 6 cut(s) 60, 384, 400, 488, 588, 723
DraI TTTAAA 1 cut(s) 654
EaeI YGGCCR 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 706
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 539
FaeI CATG 6 cut(s) 26, 92, 380, 452, 717, 882
FaqI GGGAC 1 cut(s) 719
FatI CATG 6 cut(s) 22, 88, 376, 448, 713, 878
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 163, 908
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 13
Hin1II CATG 6 cut(s) 26, 92, 380, 452, 717, 882
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 77, 899
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 887
Hpy188I TCNGA 3 cut(s) 60, 423, 793
Hpy188III TCNNGA 3 cut(s) 377, 486, 497
Hpy8I GTNNAC 1 cut(s) 887
HpyAV CCTTC 1 cut(s) 568
HpyCH4IV ACGT 1 cut(s) 917
HpyF3I CTNAG 6 cut(s) 289, 333, 388, 474, 564, 759
HpySE526I ACGT 1 cut(s) 917
Hsp92II CATG 6 cut(s) 26, 92, 380, 452, 717, 882
HspAI GCGC 1 cut(s) 11
Kzo9I GATC 6 cut(s) 60, 384, 400, 488, 588, 723
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 4 cut(s) 64, 573, 637, 850
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 3 cut(s) 46, 167, 913
MalI GATC 6 cut(s) 62, 386, 402, 490, 590, 725
MboI GATC 6 cut(s) 60, 384, 400, 488, 588, 723
MboII GAAGA 5 cut(s) 52, 483, 619, 850, 863
MflI RGATCY 3 cut(s) 60, 488, 588
MluCI AATT 9 cut(s) 98, 191, 208, 517, 526, 655, 678, 814, 931
MnlI CCTC 5 cut(s) 117, 298, 304, 460, 625
MseI TTAA 5 cut(s) 189, 224, 395, 428, 653
MslI CAYNNNNRTG 1 cut(s) 872
MspCI CTTAAG 1 cut(s) 223
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 541
MvaI CCWGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 324
NdeII GATC 6 cut(s) 60, 384, 400, 488, 588, 723
NlaIII CATG 6 cut(s) 26, 92, 380, 452, 717, 882
NlaIV GGNNCC 1 cut(s) 707
NmuCI GTSAC 3 cut(s) 46, 167, 913
NspI RCATGY 2 cut(s) 717, 882
PaeI GCATGC 1 cut(s) 717
PagI TCATGA 1 cut(s) 376
PfeI GAWTC 2 cut(s) 77, 899
PkrI GCNGC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 1 cut(s) 707
PspPI GGNCC 1 cut(s) 706
PspPPI RGGWCCY 1 cut(s) 706
PstI CTGCAG 3 cut(s) 263, 894, 907
PsuI RGATCY 3 cut(s) 60, 488, 588
RseI CAYNNNNRTG 1 cut(s) 872
SaqAI TTAA 5 cut(s) 189, 224, 395, 428, 653
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 6 cut(s) 60, 384, 400, 488, 588, 723
Sau96I GGNCC 1 cut(s) 706
ScrFI CCNGG 1 cut(s) 541
SfaNI GCATC 4 cut(s) 64, 573, 637, 850
SfcI CTRYAG 3 cut(s) 259, 890, 903
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 4 cut(s) 223, 295, 464, 495
SmoI CTYRAG 4 cut(s) 223, 295, 464, 495
SphI GCATGC 1 cut(s) 717
Sse9I AATT 9 cut(s) 98, 191, 208, 517, 526, 655, 678, 814, 931
SsiI CCGC 1 cut(s) 106
SspI AATATT 1 cut(s) 556
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 1 cut(s) 539
TaiI ACGT 1 cut(s) 920
TaqI TCGA 1 cut(s) 726
TasI AATT 9 cut(s) 98, 191, 208, 517, 526, 655, 678, 814, 931
TfiI GAWTC 2 cut(s) 77, 899
Tru1I TTAA 5 cut(s) 189, 224, 395, 428, 653
Tru9I TTAA 5 cut(s) 189, 224, 395, 428, 653
TscAI CASTG 3 cut(s) 172, 874, 918
TseFI GTSAC 3 cut(s) 46, 167, 913
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 3 cut(s) 46, 167, 913
TspDTI ATGAA 4 cut(s) 39, 151, 365, 912
TspRI CASTG 3 cut(s) 172, 874, 918
Vha464I CTTAAG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 706
XapI RAATTY 4 cut(s) 98, 191, 517, 655
XceI RCATGY 2 cut(s) 717, 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.