RchiOBHm_Chr6g0244891

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
881879 .. 882649
771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21947

Sequence Viewer

Length: 429 bp
ATGCAAAGGACATGTTCTGACCTTTTATTATACCACATGGGAAGAAAAGTGTACATGTATAATAATTCCCTTCAGCTATTGTATGGATTCAAGTGTATATCTTTGAGTTCTTTGGACATGTTCCGACCTTTTATTTGTGTTTCAGGACGCAATTTGATTGTGGTTAAAAAATACATTCAAAGGTTGATTGCCTGCGTGTTCAATGTTATTCTGCATCTGCAGAGTTCACTAATCTTCTATGAGAGATTCACTCAGAGTAAAGATGATAGTGATCCATATCCAGGAACGGTCATTCTTATGTTTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATATCTGGCATGTAGCGCACTCGTTACGTATACCGTCAGCACTTTTTTCAAGATTTCTATCTGTTAAAACATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

142

Amino Acids

16.55

Weight (kDa)

9.62

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 382
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 53, 312
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 3 cut(s) 11, 54, 117
AgsI TTSAA 4 cut(s) 91, 179, 202, 402
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AlwI GGATC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 321
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BsaAI YACGTR 1 cut(s) 380
BsaBI GATNNNNATC 3 cut(s) 270, 276, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 318
Bse8I GATNNNNATC 3 cut(s) 270, 276, 409
BseBI CCWGG 1 cut(s) 282
BseJI GATNNNNATC 3 cut(s) 270, 276, 409
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 318
BssMI GATC 1 cut(s) 271
BssNAI GTATAC 1 cut(s) 383
Bst1107I GTATAC 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 289, 387
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 193, 332, 336
BstDEI CTNAG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 5 cut(s) 15, 58, 121, 338, 365
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 218
BstSNI TACGTA 1 cut(s) 380
BstZ17I GTATAC 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 193, 332, 336
CfoI GCGC 1 cut(s) 370
CseI GACGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 52, 311
CviAII CATG 6 cut(s) 12, 37, 55, 118, 335, 362
CviJI RGCY 1 cut(s) 76
CviKI_1 RGCY 1 cut(s) 76
CviQI GTAC 2 cut(s) 52, 311
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco105I TACGTA 1 cut(s) 380
Eco32I GATATC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 355
FaeI CATG 6 cut(s) 15, 40, 58, 121, 338, 365
FatI CATG 6 cut(s) 11, 36, 54, 117, 334, 361
FblI GTMKAC 1 cut(s) 382
GlaI GCGC 1 cut(s) 369
HgaI GACGC 1 cut(s) 156
HhaI GCGC 1 cut(s) 370
Hin1II CATG 6 cut(s) 15, 40, 58, 121, 338, 365
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 2 cut(s) 87, 246
Hpy166II GTNNAC 4 cut(s) 52, 227, 307, 383
Hpy188I TCNGA 3 cut(s) 19, 125, 255
Hpy188III TCNNGA 2 cut(s) 144, 402
Hpy8I GTNNAC 4 cut(s) 52, 227, 307, 383
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 289, 387
HpyCH4IV ACGT 2 cut(s) 309, 379
HpyCH4V TGCA 4 cut(s) 4, 214, 220, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 2 cut(s) 309, 379
Hsp92II CATG 6 cut(s) 15, 40, 58, 121, 338, 365
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 7 cut(s) 129, 205, 267, 294, 299, 312, 343
LweI GCATC 1 cut(s) 223
MaeII ACGT 2 cut(s) 309, 379
MaeIII GTNAC 1 cut(s) 375
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 2 cut(s) 54, 226
MluCI AATT 3 cut(s) 64, 151, 321
MmeI TCCRAC 1 cut(s) 148
MseI TTAA 2 cut(s) 165, 417
MslI CAYNNNNRTG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 1 cut(s) 271
NlaIII CATG 6 cut(s) 15, 40, 58, 121, 338, 365
NspI RCATGY 5 cut(s) 15, 58, 121, 338, 365
PaeI GCATGC 1 cut(s) 338
PciI ACATGT 3 cut(s) 11, 54, 117
PfeI GAWTC 2 cut(s) 87, 246
PfoI TCCNGGA 1 cut(s) 280
Ppu21I YACGTR 1 cut(s) 380
PscI ACATGT 3 cut(s) 11, 54, 117
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PstI CTGCAG 1 cut(s) 222
RsaI GTAC 2 cut(s) 53, 312
RsaNI GTAC 2 cut(s) 52, 311
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 2 cut(s) 165, 417
Sau3AI GATC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 282
SetI ASST 6 cut(s) 24, 78, 130, 185, 312, 382
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 296
SnaBI TACGTA 1 cut(s) 380
SphI GCATGC 1 cut(s) 338
Sse9I AATT 3 cut(s) 64, 151, 321
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 289, 387
TaiI ACGT 2 cut(s) 312, 382
TasI AATT 3 cut(s) 64, 151, 321
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 2 cut(s) 87, 246
Tru1I TTAA 2 cut(s) 165, 417
Tru9I TTAA 2 cut(s) 165, 417
XapI RAATTY 1 cut(s) 321
XceI RCATGY 5 cut(s) 15, 58, 121, 338, 365
XmiI GTMKAC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.