RchiOBHm_Chr6g0245311

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
1164266 .. 1170030
5765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21986

Sequence Viewer

Length: 4506 bp
ATGGCCGATTCTGGAGCTAACCCTAAACAGAGACAACCCAAGAAGAACAAGAAGAAGAGAAAGCAGAGCGGACCCGAAGAATCTGAAAGGCTGCTCAAAACTAACCGCACCAACTCATCAGAGAACGAGAATGAACCAGAAGACCAAAACTTTGAAGTTGGAGAAGCTGAAAAGCCCAATCAAGGTGGTCCATGGAGGAACCTGGAGTTGATTCTGTCAATCCAGAACAGAGAGCTTGATCTTCACAAGAAGGTGGAACTAGCTCATGGTTTTGTGATGTCGAGGGTGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGCAGTGAACATGTCACGTTTAGTAATTTTTGTCAGTGATTGGGTCCAATCATTGTTGATTTCCGAAGGAAAGAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCTGAAGTTGTTTATACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTCTTAAATTAAATGTTTCTTTAACTTTCTCACGGAACCTTTTACGCTCTATATGTTGGATTGCAAGAAGTGCACTGTCCTTACTGAACAAAACATTTATTGGTGAAGGGTTACGATTGTACACTACTGTGCTTGATTGTATTTCTTTGGTATTTTCATCCCAAGAAGGCTTCTCAAATGAAAATTTAGACATGTGGATTACAACTGTAAGTTCAGTTCTTGACCTTGGACACAAATGTTACTGTGAAGCTCCTGCTAGTGGCAATGAGGGTGTATTGGTTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAGGGCTCACGCTCGGAAAGATGGATTTCGTGATTTTAGTAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGACAAGAAACATACTGAAACTTGTTGAAGATGTATTATCTCATGGGCTATATCACCCGCTCCACATTGATGGGTTTTTGAGCTTATGCAGTACTGAAAAAGACGCCACATCCAATGATGGGAAGTCAAAAGATTCTAAAACAATCAACCAGAGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCATTTGCAGTAGAAAGCATAGGAGTATTGTTTCACTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACTGCAAGTACCAAAATGATGGGGAAGAGTGAAGGTTCAAGGCTGTTAGAAGATAGTTCATTGGGTCAAACGTCTATGATGTCTTCTGAGAGTCGTATTGTTGAAAAGAATTATTGCTCAACTAGTTTCAATCCAGGAACACGAAAGTCACTTCACGATTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGTTGGATATTCATTGCACACTTAAAGCTATAAATAATGTACTTTCGGTCTTTATGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTCTCTTAATTTCTTGAAGAAGGTTTATAATATTATCATCTCATTGTCCTCAGATTTAATTCAGTTGTCAGTTACACACTCAGATAATTTTACTCTAATAGCAAATGAGGTACTTTCTGCTGTTGGCTATCTTATGGAAATTGAATATGATGTTCTAGAGAATGATCTAGTAAGCTTGTGGTTAATGATCCTCTCTTACTGGGCCATTGGGCTTTCTTTGGTGGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAACAGATATTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTGAATAATACTATCTTTGCATTGTGTAAAGCAATAAGGGTTATTAATTTACATAATAGCGATGGTGAACTGAACTATACTAGATTTGTCATTCCTTTTCATGGTGAAGCATATGCAAAAGCTGTGGAAATGCTATTATCTGCACATGAATTCAAAATTGCAATTCATAAAGCAATGAAGTCCATACCAGAAGGACAAGCAAGTCAATGTATTCGGCAGTTAACATTGGATATATCAGAATCTCTAGAGTGGATGAAAGTTAGTTGTTCGGAGGCTGATGAAAAAGAATTTTCTGAATGCCATCTAAGTAGCTTGCACAATTTTAATCTGGAAGCTGAACTTTTCGGGAGAGGGTTGTCAGAAATATATGCATTATTCCTAGAGTCATTGATTGTCACAACTGGAAACTGTAACCTTCTGGGCGCTTCTATAATGGAATTAATTAGAGTGATTTTCCCTTGCATGAGCAATCTGGTTGGACCACAGCAGGAGGATGCTGTAAACAAATTCCTATGGTCTGTCGCGGTAAAAGATTCCGACAATGTGATCACTAGAAACAAAAACAAATATATGATATTTGAAGTCTCCACTTATTGGGTAGTTTTGTTCTTCTTTCGATTGTATAGCTCCTGCCGATGCTTATATAGGCAAGCAGCAATCCTTATGCCTCCAGATTTATCAAGAAAGATGTCTGCAGAAATGGGAGATTCGTTCTCTTCATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTTTTTTCTGTTATTCAATCTGTTTCAAACATCTTTTGTAAGGACTGTGCAGCTGATTCTTGTCCTTTAACTTATCTAATGCATACTATGGCTTGTGAAAGGCTTGTAGATTTGAATAGTCGTATAAAGTCTTTTGAATATTTGATTGAAAATGGTGACAATCTGGTGCAAGTTGCGGACATCTCTTCTTTGAGGCAAGAGGCAGCAGGACTCACGGGATTTATGATGGGGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACGACTAATAATAAGATGGTTGACTATGAAAGTGATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTAGTTTGCCAAAATATTCATGCATGGTGCCCTCATGCCTCTAAAAAGGATTTGAAGAGATTCCTTTCTCTTTTAATCCATACTTCAATTCCCTATGTAAGAAGCAGCTTTGGGGTGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGGCATTGCATCAAATCTCATCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGATTTGTCTGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGCGACTTTCCATCCGGCAATGTTAAATTCAAATCATCACCTAATTGGCCAAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCTGCAACAAACTCAATGTATTTGATTGTTCCTCAGCCTCAAGTTGCAAGGGACAAAACTCCCAACCATCTACCATCATGAAATTTACAGCTTGTCAGAGTTTGCTTAATCTTTTGAGTTGCATGCCAAAAGGTCATCTGGACACGAGATCATTTTCATGTTATGTGACTTCTATTCTGAACCTCGAAAGGATTGTTGTTGGCGGCTTATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTCTTCAGATTGTTTGTGTCCTGTCGGAAGGCCTTAAGATGTATAATTACTGCTTGTGAGGAGACAGTAGCCGGTCGAACCTCAGACACTGTACTCTTTGAGGATTTATTTCCAGTTTCATGGCTTTACAAGTCAGTCCATATGGTTGCTGGGCTTCAAGAATCATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCATTAATGGATCACACATTTTATGTGTTTCTGACGTTAAATAAATATCAATCCAATCATGCTGTTCGTTTCCTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAACGTTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCCTAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTAGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCGAACTCAACCTCTGTATAAAGGTTTTTGAAGAAATTTCTAGTCTTCTACTACAAATGTTTATTCTTGACGATAATCAGCAGTCTACAACTATATGTCATGCCTATAATCTTCAGAAGTCGGGCTACAATTTAGATTTTTGGGTGCAGAGAAGATTTTGCCGGAAGGCGATGATGCTGACACTGATATGGCATGTGGTGGACTGCAGGATGAATCTGCCGTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

1501

Amino Acids

170.06

Weight (kDa)

6.05

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1584
AasI GACNNNNNNGTC 1 cut(s) 2064
Acc36I ACCTGC 1 cut(s) 3261
AccB1I GGYRCC 2 cut(s) 2895, 3069
AccB7I CCANNNNNTGG 1 cut(s) 2457
AccBSI CCGCTC 2 cut(s) 69, 991
AccI GTMKAC 1 cut(s) 4361
AccII CGCG 1 cut(s) 2387
AccIII TCCGGA 1 cut(s) 1786
AciI CCGC 6 cut(s) 69, 106, 989, 2387, 2840, 3621
AclI AACGTT 1 cut(s) 4041
AclWI GGATC 3 cut(s) 1738, 2627, 3894
AcoI YGGCCR 2 cut(s) 3, 3374
AcuI CTGAAG 6 cut(s) 450, 2640, 2934, 3215, 3658, 4373
AcyI GRCGYC 1 cut(s) 1035
AfaI GTAC 8 cut(s) 614, 1024, 1228, 1386, 1497, 1668, 2649, 3762
AfeI AGCGCT 1 cut(s) 1215
AfiI CCNNNNNNNGG 6 cut(s) 182, 752, 1050, 1964, 2457, 3301
AflII CTTAAG 2 cut(s) 3385, 3703
AflIII ACRYGT 2 cut(s) 333, 684
AhlI ACTAGT 1 cut(s) 1340
AjnI CCWGG 6 cut(s) 201, 809, 925, 1351, 1860, 4025
AjuI GAANNNNNNNTTGG 2 cut(s) 3392, 3424
AleI CACNNNNGTG 2 cut(s) 620, 3037
Alw21I GWGCWC 3 cut(s) 568, 3171, 3672
Alw26I GTCTC 5 cut(s) 25, 498, 899, 2452, 3725
Alw44I GTGCAC 1 cut(s) 564
AlwI GGATC 3 cut(s) 1738, 2627, 3894
AlwNI CAGNNNCTG 1 cut(s) 3758
Aor13HI TCCGGA 1 cut(s) 1786
Aor51HI AGCGCT 1 cut(s) 1215
AoxI GGCC 6 cut(s) 3, 1447, 1758, 3374, 3699, 4192
ApaI GGGCCC 1 cut(s) 1451
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 7 cut(s) 91, 303, 1127, 2516, 2714, 2867, 3147
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AseI ATTAAT 4 cut(s) 1835, 1908, 2303, 3881
Asp700I GAANNNNTTC 1 cut(s) 3101
AspLEI GCGC 2 cut(s) 1216, 2288
AspS9I GGNCC 8 cut(s) 71, 188, 367, 1447, 1448, 1758, 2342, 4192
AsuHPI GGTGA 8 cut(s) 298, 608, 977, 1876, 1940, 1979, 2831, 3357
AvaII GGWCC 4 cut(s) 71, 188, 367, 2342
BaeGI GKGCMC 5 cut(s) 568, 1451, 2898, 3074, 3982
BalI TGGCCA 1 cut(s) 3376
BanI GGYRCC 2 cut(s) 2895, 3069
BanII GRGCYC 3 cut(s) 826, 1451, 3672
BarI GAAGNNNNNNTAC 2 cut(s) 4385, 4417
BauI CACGAG 1 cut(s) 3562
BbsI GAAGAC 3 cut(s) 147, 1293, 4313
Bbv12I GWGCWC 3 cut(s) 568, 3171, 3672
BbvCI CCTCAGC 1 cut(s) 3451
BbvI GCAGC 7 cut(s) 78, 315, 1114, 2528, 2726, 2879, 3159
BceAI ACGGC 2 cut(s) 3279, 4480
BciT130I CCWGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
BclI TGATCA 2 cut(s) 1183, 2409
BcoDI GTCTC 5 cut(s) 25, 498, 899, 2452, 3725
BcuI ACTAGT 1 cut(s) 1340
BfmI CTRYAG 4 cut(s) 1846, 2556, 3268, 4480
BfoI RGCGCY 2 cut(s) 1217, 2289
BfrI CTTAAG 2 cut(s) 3385, 3703
BfuAI ACCTGC 1 cut(s) 3261
BglII AGATCT 1 cut(s) 4074
BisI GCNGC 8 cut(s) 92, 304, 1128, 2517, 2715, 2868, 3148, 3622
BlpI GCTNAGC 1 cut(s) 3960
BlsI GCNGC 8 cut(s) 93, 305, 1129, 2518, 2716, 2869, 3149, 3623
BmcAI AGTACT 1 cut(s) 1024
Bme1390I CCNGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
Bme18I GGWCC 4 cut(s) 71, 188, 367, 2342
BmgT120I GGNCC 8 cut(s) 71, 188, 367, 1447, 1448, 1758, 2342, 4192
BmiI GGNNCC 9 cut(s) 73, 200, 368, 530, 1398, 1449, 2897, 3071, 4193
BmrFI CCNGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
BmrI ACTGGG 1 cut(s) 1765
BmuI ACTGGG 1 cut(s) 1765
BpiI GAAGAC 3 cut(s) 147, 1293, 4313
BplI GAGNNNNNCTC 2 cut(s) 1529, 1561
BpmI CTGGAG 4 cut(s) 33, 224, 890, 2517
Bpu10I CCTNAGC 1 cut(s) 3451
Bpu1102I GCTNAGC 1 cut(s) 3960
BpuEI CTTGAG 5 cut(s) 818, 890, 1430, 3442, 3971
BsaAI YACGTR 1 cut(s) 444
BsaBI GATNNNNATC 2 cut(s) 3849, 4073
BsaHI GRCGYC 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 2 cut(s) 191, 718
BsaWI WCCGGW 1 cut(s) 1786
BsaXI ACNNNNNCTCC 2 cut(s) 4216, 4246
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 752, 1050, 1964, 2457, 3301
Bse118I RCCGGY 1 cut(s) 3740
Bse1I ACTGG 4 cut(s) 1760, 2269, 3243, 3782
Bse3DI GCAATG 6 cut(s) 763, 1468, 2043, 3020, 3206, 3352
Bse8I GATNNNNATC 2 cut(s) 3849, 4073
BseAI TCCGGA 1 cut(s) 1786
BseBI CCWGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
BseDI CCNNGG 2 cut(s) 191, 718
BseJI GATNNNNATC 2 cut(s) 3849, 4073
BseLI CCNNNNNNNGG 6 cut(s) 182, 752, 1050, 1964, 2457, 3301
BseMI GCAATG 6 cut(s) 763, 1468, 2043, 3020, 3206, 3352
BseMII CTCAG 7 cut(s) 1296, 1539, 1620, 1650, 3465, 3765, 3951
BseNI ACTGG 4 cut(s) 1760, 2269, 3243, 3782
BseRI GAGGAG 2 cut(s) 503, 3743
BseSI GKGCMC 5 cut(s) 568, 1451, 2898, 3074, 3982
BseXI GCAGC 7 cut(s) 78, 315, 1114, 2528, 2726, 2879, 3159
BseYI CCCAGC 2 cut(s) 462, 3818
BsgI GTGCAG 4 cut(s) 1989, 2733, 3015, 4442
Bsh1236I CGCG 1 cut(s) 2387
Bsh1285I CGRYCG 1 cut(s) 3745
BshFI GGCC 6 cut(s) 5, 1449, 1760, 3376, 3701, 4194
BshNI GGYRCC 2 cut(s) 2895, 3069
BsiEI CGRYCG 1 cut(s) 3745
BsiHKAI GWGCWC 3 cut(s) 568, 3171, 3672
BsiSI CCGG 4 cut(s) 1787, 3342, 3741, 4438
BslFI GGGAC 1 cut(s) 3483
BslI CCNNNNNNNGG 6 cut(s) 182, 752, 1050, 1964, 2457, 3301
BsmAI GTCTC 5 cut(s) 25, 498, 899, 2452, 3725
BsmFI GGGAC 1 cut(s) 3483
BsmI GAATGC 3 cut(s) 1141, 2165, 3646
BsnI GGCC 6 cut(s) 5, 1449, 1760, 3376, 3701, 4194
Bso31I GGTCTC 1 cut(s) 899
Bsp120I GGGCCC 1 cut(s) 1447
Bsp1286I GDGCHC 8 cut(s) 568, 826, 1451, 2898, 3074, 3171, 3672, 3982
Bsp13I TCCGGA 1 cut(s) 1786
Bsp1407I TGTACA 2 cut(s) 612, 2647
Bsp1720I GCTNAGC 1 cut(s) 3960
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 6 cut(s) 69, 106, 989, 2387, 2840, 3621
BspANI GGCC 6 cut(s) 5, 1449, 1760, 3376, 3701, 4194
BspCNI CTCAG 7 cut(s) 1297, 1540, 1619, 1649, 3464, 3764, 3952
BspEI TCCGGA 1 cut(s) 1786
BspFNI CGCG 1 cut(s) 2387
BspHI TCATGA 2 cut(s) 3495, 3862
BspLI GGNNCC 9 cut(s) 73, 200, 368, 530, 1398, 1449, 2897, 3071, 4193
BspMAI CTGCAG 3 cut(s) 2560, 3272, 4484
BspMI ACCTGC 1 cut(s) 3261
BspPI GGATC 3 cut(s) 1738, 2627, 3894
BspQI GCTCTTC 1 cut(s) 3677
BspT107I GGYRCC 2 cut(s) 2895, 3069
BspTI CTTAAG 2 cut(s) 3385, 3703
BspTNI GGTCTC 1 cut(s) 899
BsrBI CCGCTC 2 cut(s) 69, 991
BsrDI GCAATG 6 cut(s) 763, 1468, 2043, 3020, 3206, 3352
BsrFI RCCGGY 1 cut(s) 3740
BsrGI TGTACA 2 cut(s) 612, 2647
BsrI ACTGG 4 cut(s) 1760, 2269, 3243, 3782
BssAI RCCGGY 1 cut(s) 3740
BssECI CCNNGG 2 cut(s) 191, 718
BssNI GRCGYC 1 cut(s) 1035
BssSI CACGAG 1 cut(s) 3562
BssT1I CCWWGG 2 cut(s) 191, 718
Bst2BI CACGAG 1 cut(s) 3562
Bst2UI CCWGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
Bst4CI ACNGT 9 cut(s) 570, 622, 700, 737, 2273, 2711, 3228, 3736, 3760
Bst6I CTCTTC 6 cut(s) 50, 1238, 2584, 2854, 3092, 3677
BstACI GRCGYC 1 cut(s) 1035
BstAFI CTTAAG 2 cut(s) 3385, 3703
BstAPI GCANNNNNTGC 2 cut(s) 563, 1136
BstAUI TGTACA 2 cut(s) 612, 2647
BstBAI YACGTR 1 cut(s) 444
BstC8I GCNNGC 4 cut(s) 2177, 2514, 3542, 4201
BstDSI CCRYGG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 2387
BstH2I RGCGCY 2 cut(s) 1217, 2289
BstHHI GCGC 2 cut(s) 1216, 2288
BstMAI GTCTC 5 cut(s) 25, 498, 899, 2452, 3725
BstMCI CGRYCG 1 cut(s) 3745
BstMWI GCNNNNNNNGC 7 cut(s) 563, 871, 880, 1136, 1220, 1405, 4200
BstNI CCWGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
BstNSI RCATGY 5 cut(s) 337, 688, 3544, 4203, 4472
BstSCI CCNGG 6 cut(s) 201, 809, 925, 1351, 1860, 4025
BstSFI CTRYAG 4 cut(s) 1846, 2556, 3268, 4480
BstSLI GKGCMC 5 cut(s) 568, 1451, 2898, 3074, 3982
BstSNI TACGTA 1 cut(s) 444
BstUI CGCG 1 cut(s) 2387
BstV1I GCAGC 7 cut(s) 78, 315, 1114, 2528, 2726, 2879, 3159
BstV2I GAAGAC 3 cut(s) 147, 1293, 4313
BstX2I RGATCY 1 cut(s) 4074
BstXI CCANNNNNNTGG 4 cut(s) 914, 1001, 1237, 3789
BstYI RGATCY 1 cut(s) 4074
BsuRI GGCC 6 cut(s) 5, 1449, 1760, 3376, 3701, 4194
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 2 cut(s) 1938, 4460
BtsI GCAGTG 2 cut(s) 313, 333
BtsIMutI CAGTG 7 cut(s) 313, 333, 364, 566, 3233, 3756, 4457
BveI ACCTGC 1 cut(s) 3261
Cac8I GCNNGC 4 cut(s) 2177, 2514, 3542, 4201
CaiI CAGNNNCTG 1 cut(s) 3758
CciI TCATGA 2 cut(s) 3495, 3862
CfoI GCGC 2 cut(s) 1216, 2288
Cfr10I RCCGGY 1 cut(s) 3740
Cfr13I GGNCC 8 cut(s) 71, 188, 367, 1447, 1448, 1758, 2342, 4192
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 8 cut(s) 613, 1023, 1227, 1385, 1496, 1667, 2648, 3761
CspCI CAANNNNNGTGG 4 cut(s) 166, 201, 1968, 2003
CviQI GTAC 8 cut(s) 613, 1023, 1227, 1385, 1496, 1667, 2648, 3761
DraI TTTAAA 1 cut(s) 4140
DrdI GACNNNNNNGTC 1 cut(s) 2064
DseDI GACNNNNNNGTC 1 cut(s) 2064
EaeI YGGCCR 2 cut(s) 3, 3374
Eam1104I CTCTTC 6 cut(s) 50, 1238, 2584, 2854, 3092, 3677
EarI CTCTTC 6 cut(s) 50, 1238, 2584, 2854, 3092, 3677
Ecl136II GAGCTC 1 cut(s) 3670
Eco105I TACGTA 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 191, 718
Eco147I AGGCCT 1 cut(s) 3701
Eco24I GRGCYC 3 cut(s) 826, 1451, 3672
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 4 cut(s) 71, 188, 367, 2342
Eco47III AGCGCT 1 cut(s) 1215
Eco53kI GAGCTC 1 cut(s) 3670
Eco57I CTGAAG 6 cut(s) 450, 2640, 2934, 3215, 3658, 4373
EcoICRI GAGCTC 1 cut(s) 3670
EcoO109I RGGNCCY 2 cut(s) 1448, 4192
EcoRI GAATTC 2 cut(s) 2012, 4003
EcoRII CCWGG 6 cut(s) 201, 809, 925, 1351, 1860, 4025
EcoT14I CCWWGG 2 cut(s) 191, 718
EcoT22I ATGCAT 5 cut(s) 1141, 1515, 2236, 2748, 3067
EcoT38I GRGCYC 3 cut(s) 826, 1451, 3672
ErhI CCWWGG 2 cut(s) 191, 718
FalI AAGNNNNNCTT 2 cut(s) 2187, 2219
FaqI GGGAC 1 cut(s) 3483
FauI CCCGC 1 cut(s) 996
FauNDI CATATG 2 cut(s) 1975, 3810
FbaI TGATCA 2 cut(s) 1183, 2409
FblI GTMKAC 1 cut(s) 4361
Fnu4HI GCNGC 8 cut(s) 92, 304, 1128, 2517, 2715, 2868, 3148, 3622
FriOI GRGCYC 3 cut(s) 826, 1451, 3672
Fsp4HI GCNGC 8 cut(s) 92, 304, 1128, 2517, 2715, 2868, 3148, 3622
GlaI GCGC 2 cut(s) 1215, 2287
GluI GCNGC 8 cut(s) 92, 304, 1128, 2517, 2715, 2868, 3148, 3622
GsaI CCCAGC 2 cut(s) 466, 3822
GsuI CTGGAG 4 cut(s) 33, 224, 890, 2517
HaeII RGCGCY 2 cut(s) 1217, 2289
HaeIII GGCC 6 cut(s) 5, 1449, 1760, 3376, 3701, 4194
HapII CCGG 4 cut(s) 1787, 3342, 3741, 4438
HgaI GACGC 1 cut(s) 1043
HhaI GCGC 2 cut(s) 1216, 2288
Hin1I GRCGYC 1 cut(s) 1035
Hin6I GCGC 2 cut(s) 1214, 2286
HinP1I GCGC 2 cut(s) 1214, 2286
HincII GTYRAC 3 cut(s) 1853, 2085, 2968
HindII GTYRAC 3 cut(s) 1853, 2085, 2968
HindIII AAGCTT 1 cut(s) 1729
HpaI GTTAAC 1 cut(s) 2085
HpaII CCGG 4 cut(s) 1787, 3342, 3741, 4438
HphI GGTGA 8 cut(s) 298, 608, 977, 1876, 1940, 1979, 2831, 3357
HpyCH4III ACNGT 9 cut(s) 570, 622, 700, 737, 2273, 2711, 3228, 3736, 3760
HpyCH4IV ACGT 5 cut(s) 340, 443, 1289, 3911, 4041
HpyF10VI GCNNNNNNNGC 7 cut(s) 563, 871, 880, 1136, 1220, 1405, 4200
HpySE526I ACGT 5 cut(s) 340, 443, 1289, 3911, 4041
Hsp92I GRCGYC 1 cut(s) 1035
HspAI GCGC 2 cut(s) 1214, 2286
Kpn2I TCCGGA 1 cut(s) 1786
Ksp22I TGATCA 2 cut(s) 1183, 2409
KspAI GTTAAC 1 cut(s) 2085
LguI GCTCTTC 1 cut(s) 3677
LmnI GCTCC 7 cut(s) 14, 748, 870, 996, 1396, 1553, 2495
Lsp1109I GCAGC 7 cut(s) 78, 315, 1114, 2528, 2726, 2879, 3159
MaeII ACGT 5 cut(s) 340, 443, 1289, 3911, 4041
MaeIII GTNAC 9 cut(s) 336, 603, 731, 1365, 1627, 2257, 2273, 2819, 3583
MbiI CCGCTC 2 cut(s) 69, 991
MflI RGATCY 1 cut(s) 4074
MhlI GDGCHC 8 cut(s) 568, 826, 1451, 2898, 3074, 3171, 3672, 3982
MlsI TGGCCA 1 cut(s) 3376
MluNI TGGCCA 1 cut(s) 3376
MlyI GAGTC 4 cut(s) 500, 1318, 2255, 2868
MmeI TCCRAC 7 cut(s) 139, 530, 911, 1440, 2320, 2424, 3674
Mox20I TGGCCA 1 cut(s) 3376
Mph1103I ATGCAT 5 cut(s) 1141, 1515, 2236, 2748, 3067
MroI TCCGGA 1 cut(s) 1786
MroXI GAANNNNTTC 1 cut(s) 3101
MscI TGGCCA 1 cut(s) 3376
MslI CAYNNNNRTG 6 cut(s) 620, 999, 3037, 3226, 3574, 4462
Msp20I TGGCCA 1 cut(s) 3376
MspA1I CMGCKG 1 cut(s) 2717
MspCI CTTAAG 2 cut(s) 3385, 3703
MspI CCGG 4 cut(s) 1787, 3342, 3741, 4438
MspR9I CCNGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
Mva1269I GAATGC 3 cut(s) 1141, 2165, 3646
MvaI CCWGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
MvnI CGCG 1 cut(s) 2387
MwoI GCNNNNNNNGC 7 cut(s) 563, 871, 880, 1136, 1220, 1405, 4200
NcoI CCATGG 1 cut(s) 191
NdeI CATATG 2 cut(s) 1975, 3810
NlaIV GGNNCC 9 cut(s) 73, 200, 368, 530, 1398, 1449, 2897, 3071, 4193
NmuCI GTSAC 5 cut(s) 336, 1365, 2257, 2819, 3583
NsiI ATGCAT 5 cut(s) 1141, 1515, 2236, 2748, 3067
NspI RCATGY 5 cut(s) 337, 688, 3544, 4203, 4472
OliI CACNNNNGTG 2 cut(s) 620, 3037
PaeI GCATGC 2 cut(s) 3544, 4203
PagI TCATGA 2 cut(s) 3495, 3862
PceI AGGCCT 1 cut(s) 3701
PciI ACATGT 2 cut(s) 333, 684
PciSI GCTCTTC 1 cut(s) 3677
PctI GAATGC 3 cut(s) 1141, 2165, 3646
PdmI GAANNNNTTC 1 cut(s) 3101
PflMI CCANNNNNTGG 1 cut(s) 2457
PfoI TCCNGGA 1 cut(s) 1351
PkrI GCNGC 8 cut(s) 93, 305, 1129, 2518, 2716, 2869, 3149, 3623
PleI GAGTC 4 cut(s) 499, 1317, 2254, 2868
PpsI GAGTC 4 cut(s) 499, 1317, 2254, 2868
Ppu21I YACGTR 1 cut(s) 444
PscI ACATGT 2 cut(s) 333, 684
PshBI ATTAAT 4 cut(s) 1835, 1908, 2303, 3881
PsiI TTATAA 1 cut(s) 1584
Psp124BI GAGCTC 1 cut(s) 3672
Psp1406I AACGTT 1 cut(s) 4041
Psp6I CCWGG 6 cut(s) 201, 809, 925, 1351, 1860, 4025
PspFI CCCAGC 2 cut(s) 462, 3818
PspGI CCWGG 6 cut(s) 201, 809, 925, 1351, 1860, 4025
PspN4I GGNNCC 9 cut(s) 73, 200, 368, 530, 1398, 1449, 2897, 3071, 4193
PspOMI GGGCCC 1 cut(s) 1447
PspPI GGNCC 8 cut(s) 71, 188, 367, 1447, 1448, 1758, 2342, 4192
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
PstI CTGCAG 3 cut(s) 2560, 3272, 4484
PstNI CAGNNNCTG 1 cut(s) 3758
PsuI RGATCY 1 cut(s) 4074
PvuII CAGCTG 1 cut(s) 2717
RsaI GTAC 8 cut(s) 614, 1024, 1228, 1386, 1497, 1668, 2649, 3762
RsaNI GTAC 8 cut(s) 613, 1023, 1227, 1385, 1496, 1667, 2648, 3761
RseI CAYNNNNRTG 6 cut(s) 620, 999, 3037, 3226, 3574, 4462
SacI GAGCTC 1 cut(s) 3672
SapI GCTCTTC 1 cut(s) 3677
SatI GCNGC 8 cut(s) 92, 304, 1128, 2517, 2715, 2868, 3148, 3622
Sau96I GGNCC 8 cut(s) 71, 188, 367, 1447, 1448, 1758, 2342, 4192
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 4 cut(s) 500, 1318, 2255, 2868
ScrFI CCNGG 6 cut(s) 203, 811, 927, 1353, 1862, 4027
SduI GDGCHC 8 cut(s) 568, 826, 1451, 2898, 3074, 3171, 3672, 3982
SfcI CTRYAG 4 cut(s) 1846, 2556, 3268, 4480
SinI GGWCC 4 cut(s) 71, 188, 367, 2342
SmiMI CAYNNNNRTG 6 cut(s) 620, 999, 3037, 3226, 3574, 4462
SmlI CTYRAG 7 cut(s) 797, 869, 1409, 3385, 3457, 3703, 3950
SmoI CTYRAG 7 cut(s) 797, 869, 1409, 3385, 3457, 3703, 3950
SnaBI TACGTA 1 cut(s) 444
SpeI ACTAGT 1 cut(s) 1340
SphI GCATGC 2 cut(s) 3544, 4203
SseBI AGGCCT 1 cut(s) 3701
SsiI CCGC 6 cut(s) 69, 106, 989, 2387, 2840, 3621
SspI AATATT 4 cut(s) 1588, 2804, 2931, 3058
SstI GAGCTC 1 cut(s) 3672
StuI AGGCCT 1 cut(s) 3701
StyD4I CCNGG 6 cut(s) 201, 809, 925, 1351, 1860, 4025
StyI CCWWGG 2 cut(s) 191, 718
TaaI ACNGT 9 cut(s) 570, 622, 700, 737, 2273, 2711, 3228, 3736, 3760
TaiI ACGT 5 cut(s) 343, 446, 1292, 3914, 4044
TaqI TCGA 5 cut(s) 281, 2479, 3603, 3745, 4212
TaqII GACCGA 1 cut(s) 1492
TatI WGTACW 6 cut(s) 612, 1022, 1384, 1495, 2647, 3760
TauI GCSGC 1 cut(s) 3624
TscAI CASTG 7 cut(s) 313, 333, 364, 573, 3233, 3763, 4464
TseFI GTSAC 5 cut(s) 336, 1365, 2257, 2819, 3583
TseI GCWGC 7 cut(s) 91, 303, 1127, 2516, 2714, 2867, 3147
Tsp45I GTSAC 5 cut(s) 336, 1365, 2257, 2819, 3583
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 7 cut(s) 313, 333, 364, 573, 3233, 3763, 4464
Van91I CCANNNNNTGG 1 cut(s) 2457
Vha464I CTTAAG 2 cut(s) 3385, 3703
VneI GTGCAC 1 cut(s) 564
VpaK11BI GGWCC 4 cut(s) 71, 188, 367, 2342
VspI ATTAAT 4 cut(s) 1835, 1908, 2303, 3881
XbaI TCTAGA 2 cut(s) 1711, 2107
XceI RCATGY 5 cut(s) 337, 688, 3544, 4203, 4472
XcmI CCANNNNNNNNNTGG 2 cut(s) 3033, 3815
XmiI GTMKAC 1 cut(s) 4361
XmnI GAANNNNTTC 1 cut(s) 3101
ZrmI AGTACT 1 cut(s) 1024
Zsp2I ATGCAT 5 cut(s) 1141, 1515, 2236, 2748, 3067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.