Rh6CG025200

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2294636 .. 2296950
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG025200.1

Sequence Viewer

Length: 537 bp
ATGACGTGTGCTGGAAGTGAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGGACGCAATTTGATTGAGGTTAAAAAATACATTCAGAGGTTAATTGCCTGCATGTTCAATGTTATTCTGCATCTGCAGAGTCCACTAATCTTCTATGAGAGACTCAATCAGAGTAAAGATGATAGTGATCCAGATCCAGGAACAGTCATTCTTATAAGGATTTATGAAGAGCTAAGACATCAAAAAGAGGTCTTTGGTCCACACTGTTACCACTTTTTAGCTTATTACATACGGGTTTATTCAGGATATGGCCCCCGCAAAACAGGCATCAAAAGGGAAATAGATGAAGCTCTAAGACCAGGTGTATATGCGCTGATAGATGTTTGCTCACCTGATGATCTTCAACGTTTTCATACCTCATTTGGAGAGGGTCCTTGCAGAAACACTTTGGCAACCTTGAAGCACGATTACGAACTCAATTTCCAGTACCAGGGAAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

178

Amino Acids

20.28

Weight (kDa)

6.06

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 42 - 177 1.4e-19 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AciI CCGC 1 cut(s) 349
AclI AACGTT 1 cut(s) 439
AclWI GGATC 2 cut(s) 215, 221
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 230, 523
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 4 cut(s) 42, 151, 437, 493
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 3 cut(s) 229, 391, 522
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 3 cut(s) 265, 314, 383
AluI AGCT 3 cut(s) 265, 314, 383
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 2 cut(s) 215, 221
AoxI GGCC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 3 cut(s) 290, 344, 464
AsuHPI GGTGA 1 cut(s) 414
AvaII GGWCC 2 cut(s) 290, 464
BarI GAAGNNNNNNTAC 2 cut(s) 485, 517
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 3 cut(s) 231, 393, 524
BcoDI GTCTC 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 167
Bme1390I CCNGG 3 cut(s) 231, 393, 524
Bme18I GGWCC 2 cut(s) 290, 464
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 3 cut(s) 290, 344, 464
BmiI GGNNCC 2 cut(s) 346, 465
BmrFI CCNGG 3 cut(s) 231, 393, 524
BmsI GCATC 3 cut(s) 59, 172, 369
BsaBI GATNNNNATC 2 cut(s) 219, 225
BsaJI CCNNGG 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 523
Bse1I ACTGG 1 cut(s) 517
Bse8I GATNNNNATC 2 cut(s) 219, 225
BseBI CCWGG 3 cut(s) 231, 393, 524
BseDI CCNNGG 1 cut(s) 523
BseJI GATNNNNATC 2 cut(s) 219, 225
BseLI CCNNNNNNNGG 2 cut(s) 230, 523
BseNI ACTGG 1 cut(s) 517
BshFI GGCC 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 230, 523
BsmAI GTCTC 1 cut(s) 187
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 220, 226, 430
BspACI CCGC 1 cut(s) 349
BspANI GGCC 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 346, 465
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 2 cut(s) 215, 221
BspQI GCTCTTC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 3 cut(s) 220, 226, 430
Bst2UI CCWGG 3 cut(s) 231, 393, 524
Bst4CI ACNGT 2 cut(s) 238, 299
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 266, 386
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 223, 229, 433
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 220, 226, 430
BstMWI GCNNNNNNNGC 2 cut(s) 63, 357
BstNI CCWGG 3 cut(s) 231, 393, 524
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 229, 391, 522
BstSFI CTRYAG 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 345
BtrI CACGTC 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 290, 344, 464
CseI GACGC 1 cut(s) 105
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 1 cut(s) 520
CviAII CATG 1 cut(s) 145
CviJI RGCY 4 cut(s) 265, 314, 345, 383
CviKI_1 RGCY 4 cut(s) 265, 314, 345, 383
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 2 cut(s) 266, 386
DpnI GATC 3 cut(s) 222, 228, 432
DpnII GATC 3 cut(s) 220, 226, 430
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 290, 464
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 229, 391, 522
FaeI CATG 1 cut(s) 148
FaiI YATR 9 cut(s) 146, 189, 248, 258, 323, 342, 400, 402, 447
FatI CATG 1 cut(s) 144
FauI CCCGC 1 cut(s) 356
GlaI GCGC 1 cut(s) 405
HaeIII GGCC 1 cut(s) 345
HgaI GACGC 1 cut(s) 105
HhaI GCGC 1 cut(s) 406
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HinfI GANTC 2 cut(s) 172, 195
HphI GGTGA 1 cut(s) 414
Hpy166II GTNNAC 2 cut(s) 176, 293
Hpy188I TCNGA 2 cut(s) 129, 204
Hpy188III TCNNGA 4 cut(s) 80, 93, 224, 336
Hpy8I GTNNAC 2 cut(s) 176, 293
HpyCH4III ACNGT 2 cut(s) 238, 299
HpyCH4IV ACGT 2 cut(s) 5, 439
HpyCH4V TGCA 5 cut(s) 50, 144, 163, 169, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 357
HpyF3I CTNAG 2 cut(s) 266, 386
HpySE526I ACGT 2 cut(s) 5, 439
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 3 cut(s) 220, 226, 430
LguI GCTCTTC 1 cut(s) 255
LweI GCATC 3 cut(s) 59, 172, 369
MabI ACCWGGT 1 cut(s) 391
MaeII ACGT 2 cut(s) 5, 439
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 222, 228, 432
MboI GATC 3 cut(s) 220, 226, 430
MboII GAAGA 5 cut(s) 30, 32, 175, 272, 425
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 226
MluCI AATT 5 cut(s) 42, 83, 100, 135, 511
MlyI GAGTC 2 cut(s) 181, 189
MnlI CCTC 6 cut(s) 20, 103, 123, 274, 454, 460
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 2 cut(s) 114, 134
MspR9I CCNGG 3 cut(s) 231, 393, 524
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 3 cut(s) 231, 393, 524
MwoI GCNNNNNNNGC 2 cut(s) 63, 357
NdeII GATC 3 cut(s) 220, 226, 430
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 346, 465
NspI RCATGY 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 229
PleI GAGTC 2 cut(s) 180, 189
PpsI GAGTC 2 cut(s) 180, 189
PpuMI RGGWCCY 1 cut(s) 464
PsiI TTATAA 1 cut(s) 248
Psp1406I AACGTT 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 229, 391, 522
PspGI CCWGG 3 cut(s) 229, 391, 522
PspN4I GGNNCC 2 cut(s) 346, 465
PspPI GGNCC 3 cut(s) 290, 344, 464
PspPPI RGGWCCY 1 cut(s) 464
PstI CTGCAG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 114, 134
Sau3AI GATC 3 cut(s) 220, 226, 430
Sau96I GGNCC 3 cut(s) 290, 344, 464
SchI GAGTC 2 cut(s) 181, 189
ScrFI CCNGG 3 cut(s) 231, 393, 524
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 3 cut(s) 59, 172, 369
SfcI CTRYAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 290, 464
Sse9I AATT 5 cut(s) 42, 83, 100, 135, 511
SsiI CCGC 1 cut(s) 349
StyD4I CCNGG 3 cut(s) 229, 391, 522
TaaI ACNGT 2 cut(s) 238, 299
TaiI ACGT 2 cut(s) 8, 442
TasI AATT 5 cut(s) 42, 83, 100, 135, 511
Tru1I TTAA 2 cut(s) 114, 134
Tru9I TTAA 2 cut(s) 114, 134
TscAI CASTG 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 273, 393, 434
TspRI CASTG 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 290, 464
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.