Rh6AG029000

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000376
Physical Location & Seq
Reverse (-)
3524725 .. 3525940
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG029000.1

Sequence Viewer

Length: 654 bp
ATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGCGTTTTAGTGGGTTTTTATGGGGCCTAGCATGCGTTGTGATCAACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCATTCTCCAAACTCAACCTTTATGGTGTTCTGAAGTATCTGGAAGAATTAGGGAATCATTTTCCTTTGACTAATCCTACCTTATCCAAAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTTGGGAAATGCATAACTTTACAAGGGAAAAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCATAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTTTCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCGGGAAGGGTGCCCGAAGACAAGTGATGTAAAATCTCACACAGTACCTGGGGGAAACACGAATAATGTTGGCGAATGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

217

Amino Acids

24.12

Weight (kDa)

9.22

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 579
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 571
AcsI RAATTY 2 cut(s) 73, 464
AcuI CTGAAG 2 cut(s) 254, 444
AfaI GTAC 1 cut(s) 615
AgsI TTSAA 4 cut(s) 79, 200, 469, 542
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AluBI AGCT 4 cut(s) 176, 316, 473, 545
AluI AGCT 4 cut(s) 176, 316, 473, 545
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 73, 464
AspS9I GGNCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 579
BanII GRGCYC 2 cut(s) 331, 559
BbsI GAAGAC 1 cut(s) 593
BccI CCATC 2 cut(s) 146, 301
BciT130I CCWGG 1 cut(s) 618
BclI TGATCA 1 cut(s) 141
BfaI CTAG 3 cut(s) 128, 474, 560
BfmI CTRYAG 2 cut(s) 317, 534
BglII AGATCT 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 125, 581
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 4 cut(s) 55, 383, 437, 532
BpiI GAAGAC 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 579
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 331, 559, 584
Bsp143I GATC 2 cut(s) 6, 141
BspACI CCGC 1 cut(s) 571
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 125, 581
BspMAI CTGCAG 1 cut(s) 538
BspT107I GGYRCC 1 cut(s) 579
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 2 cut(s) 6, 141
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 2 cut(s) 321, 613
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 2 cut(s) 9, 144
BstMBI GATC 2 cut(s) 6, 141
BstMWI GCNNNNNNNGC 3 cut(s) 132, 371, 542
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 616
BstSFI CTRYAG 2 cut(s) 317, 534
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 614
CviAII CATG 2 cut(s) 132, 380
CviJI RGCY 8 cut(s) 126, 176, 316, 329, 444, 473, 545, 557
CviKI_1 RGCY 8 cut(s) 126, 176, 316, 329, 444, 473, 545, 557
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 8, 143
DpnII GATC 2 cut(s) 6, 141
DraI TTTAAA 1 cut(s) 72
Eco24I GRGCYC 2 cut(s) 331, 559
Eco57I CTGAAG 2 cut(s) 254, 444
EcoO109I RGGNCCY 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 2 cut(s) 331, 559
FaeI CATG 2 cut(s) 135, 383
FaiI YATR 8 cut(s) 95, 121, 133, 225, 344, 381, 404, 503
FatI CATG 2 cut(s) 131, 379
FauI CCCGC 1 cut(s) 564
FbaI TGATCA 1 cut(s) 141
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 2 cut(s) 331, 559
FspBI CTAG 3 cut(s) 128, 474, 560
GsaI CCCAGC 1 cut(s) 448
HaeIII GGCC 1 cut(s) 126
Hin1II CATG 2 cut(s) 135, 383
HinfI GANTC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 234, 424
Hpy188III TCNNGA 2 cut(s) 242, 380
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 2 cut(s) 321, 613
HpyCH4V TGCA 5 cut(s) 4, 342, 374, 523, 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 371, 542
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 135, 383
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 6, 141
LpnPI CCDG 5 cut(s) 227, 426, 430, 603, 630
LweI GCATC 4 cut(s) 55, 383, 437, 532
MaeI CTAG 3 cut(s) 128, 474, 560
MaeIII GTNAC 1 cut(s) 321
MalI GATC 2 cut(s) 8, 143
MboI GATC 2 cut(s) 6, 141
MboII GAAGA 3 cut(s) 37, 257, 598
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 331, 559, 584
MluCI AATT 4 cut(s) 73, 96, 248, 464
MnlI CCTC 2 cut(s) 43, 474
Mph1103I ATGCAT 1 cut(s) 344
MseI TTAA 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 618
MvaI CCWGG 1 cut(s) 618
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 132, 371, 542
NdeII GATC 2 cut(s) 6, 141
NlaIII CATG 2 cut(s) 135, 383
NlaIV GGNNCC 2 cut(s) 125, 581
NsiI ATGCAT 1 cut(s) 344
NspI RCATGY 1 cut(s) 135
PaeI GCATGC 1 cut(s) 135
PagI TCATGA 1 cut(s) 379
PfeI GAWTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 125, 581
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 2 cut(s) 6, 141
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 3 cut(s) 331, 559, 584
SfaNI GCATC 4 cut(s) 55, 383, 437, 532
SfcI CTRYAG 2 cut(s) 317, 534
SphI GCATGC 1 cut(s) 135
Sse9I AATT 4 cut(s) 73, 96, 248, 464
SsiI CCGC 1 cut(s) 571
SspI AATATT 1 cut(s) 452
SspMI CTAG 3 cut(s) 128, 474, 560
StyD4I CCNGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 321, 613
TaqI TCGA 2 cut(s) 549, 649
TasI AATT 4 cut(s) 73, 96, 248, 464
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 501
TspDTI ATGAA 3 cut(s) 396, 477, 490
TspRI CASTG 1 cut(s) 501
XapI RAATTY 2 cut(s) 73, 464
XceI RCATGY 1 cut(s) 135
XspI CTAG 3 cut(s) 128, 474, 560
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.