Rh6CG026000

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2311022 .. 2311737
716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG026000.1

Sequence Viewer

Length: 363 bp
ATGGCCGATTCTGGAGCGGACAACCCTAAACAGAGACAACCCAAGAAGAACAACAAGAAGAGAAAGCAGAGCGGACCCCAAGAATCTGAAAGGCCACCCAAAACTAACCGCACCAATTCACCAGAGAACGAGAATGAACCACAAGACCAAAACTTTGAAGTTGGAAAAGCTGAAAAACCCAATCAAGGTGGTCCATGGAGGAACCTGGAGTTAATTCTGCCAATCCAGAACAGAGAGCTTGATCTTCACAAGAAGGTGGAACTAGCTCATGGTTTTGTGATGTTGAGGGTGAAGGAAGAAGGAGGCAGCAGTGATGAGGATAATCAAGAGGTGAACATGTCACGTTTAATAATTTGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

120

Amino Acids

13.7

Weight (kDa)

6.75

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 17, 72
AciI CCGC 3 cut(s) 17, 72, 109
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 170, 238, 266
AluI AGCT 3 cut(s) 170, 238, 266
Alw26I GTCTC 1 cut(s) 28
AoxI GGCC 2 cut(s) 3, 92
ApeKI GCWGC 1 cut(s) 306
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspS9I GGNCC 2 cut(s) 74, 191
AsuHPI GGTGA 3 cut(s) 111, 301, 343
AvaII GGWCC 2 cut(s) 74, 191
BbvI GCAGC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 2 cut(s) 74, 191
BmgT120I GGNCC 2 cut(s) 74, 191
BmiI GGNNCC 2 cut(s) 76, 203
BmrFI CCNGG 1 cut(s) 206
BpmI CTGGAG 2 cut(s) 33, 227
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 318
BshFI GGCC 2 cut(s) 5, 94
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 5, 94
Bsp143I GATC 1 cut(s) 241
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 3 cut(s) 17, 72, 109
BspANI GGCC 2 cut(s) 5, 94
BspLI GGNNCC 2 cut(s) 76, 203
BsrBI CCGCTC 2 cut(s) 17, 72
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 194
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 5, 94
BtgI CCRYGG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 74, 191
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 3 cut(s) 195, 269, 337
CviJI RGCY 5 cut(s) 5, 94, 170, 238, 266
CviKI_1 RGCY 5 cut(s) 5, 94, 170, 238, 266
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 74, 191
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 3 cut(s) 198, 272, 340
FaiI YATR 3 cut(s) 196, 270, 338
FatI CATG 3 cut(s) 194, 268, 336
Fnu4HI GCNGC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 307
GsuI CTGGAG 2 cut(s) 33, 227
HaeIII GGCC 2 cut(s) 5, 94
Hin1II CATG 3 cut(s) 198, 272, 340
HinfI GANTC 2 cut(s) 8, 83
HphI GGTGA 3 cut(s) 111, 301, 343
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 12, 226, 326
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 3 cut(s) 247, 286, 293
HpyCH4IV ACGT 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 3 cut(s) 198, 272, 340
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 135, 191, 218, 239
Lsp1109I GCAGC 1 cut(s) 318
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 339
MalI GATC 1 cut(s) 243
MbiI CCGCTC 2 cut(s) 17, 72
MboI GATC 1 cut(s) 241
MboII GAAGA 4 cut(s) 58, 70, 236, 308
MluCI AATT 3 cut(s) 115, 213, 351
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 5 cut(s) 192, 279, 296, 310, 322
MseI TTAA 2 cut(s) 212, 347
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 194
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 198, 272, 340
NlaIV GGNNCC 2 cut(s) 76, 203
NmuCI GTSAC 1 cut(s) 339
NspI RCATGY 1 cut(s) 340
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 2 cut(s) 8, 83
PkrI GCNGC 1 cut(s) 308
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 76, 203
PspPI GGNCC 2 cut(s) 74, 191
SaqAI TTAA 2 cut(s) 212, 347
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 2 cut(s) 74, 191
ScrFI CCNGG 1 cut(s) 206
SetI ASST 8 cut(s) 172, 190, 207, 240, 258, 268, 333, 346
SinI GGWCC 2 cut(s) 74, 191
Sse9I AATT 3 cut(s) 115, 213, 351
SsiI CCGC 3 cut(s) 17, 72, 109
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 194
TaiI ACGT 1 cut(s) 346
TasI AATT 3 cut(s) 115, 213, 351
TfiI GAWTC 2 cut(s) 8, 83
Tru1I TTAA 2 cut(s) 212, 347
Tru9I TTAA 2 cut(s) 212, 347
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 74, 191
XceI RCATGY 1 cut(s) 340
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.