RchiOBHm_Chr6g0245441

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000376
Physical Location & Seq
Reverse (-)
1232360 .. 1233620
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21999

Sequence Viewer

Length: 885 bp
ATGGTTGCTGGGCTTCAAGAATTATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCCAATCATGTTGTTTGTTTCCTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAAACTGGCTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTGGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACTAATCTCCGAACTCAACCTCTGTATAAAGATTTTGCCGGAAGGCAATGATGCTGACACTGATATTGCATATGGTGGACTACAGGATGAATCTACAATTGCAGTGACATGCTCAGCATCATCTGACATCTGTGAAGACTCTGTAATTGGTAGTGCTCATAGAAGAAGACCGCACTTGAAAGATGCAAATAGTGTTGCTAGTGTTCTCACTGCTGTTGATTCATTTAAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATGCTAAAAGGTGATTTCCCCAACGCAGCATTTTTACTCAGGCAGTTGTTAATCGCCTCTTCTGCTATTTTGAGGCTAAATTTGCATATTAAGAGTGCTCTCATGTTGTCATGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTAATCAGCGGACGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

294

Amino Acids

32.52

Weight (kDa)

6.7

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 629, 873
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 4 cut(s) 157, 193, 331, 799
AgsI TTSAA 7 cut(s) 17, 193, 212, 250, 337, 458, 637
AjnI CCWGG 2 cut(s) 215, 384
AluBI AGCT 2 cut(s) 154, 434
AluI AGCT 2 cut(s) 154, 434
Alw21I GWGCWC 2 cut(s) 616, 820
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 236, 746
ApoI RAATTY 4 cut(s) 157, 193, 331, 799
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 172
BbsI GAAGAC 2 cut(s) 600, 631
Bbv12I GWGCWC 2 cut(s) 616, 820
BbvI GCAGC 2 cut(s) 223, 758
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 217, 386
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 539
BglII AGATCT 1 cut(s) 264
BisI GCNGC 2 cut(s) 237, 747
BlpI GCTNAGC 2 cut(s) 150, 571
BlsI GCNGC 2 cut(s) 238, 748
Bme1390I CCNGG 2 cut(s) 217, 386
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 217, 386
BmsI GCATC 5 cut(s) 249, 313, 499, 584, 631
BpiI GAAGAC 2 cut(s) 600, 631
Bpu1102I GCTNAGC 2 cut(s) 150, 571
BpuEI CTTGAG 1 cut(s) 161
BsaBI GATNNNNATC 2 cut(s) 39, 263
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bse1I ACTGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 511
Bse8I GATNNNNATC 2 cut(s) 39, 263
BseBI CCWGG 2 cut(s) 217, 386
BseGI GGATG 2 cut(s) 170, 550
BseJI GATNNNNATC 2 cut(s) 39, 263
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 3 cut(s) 141, 585, 772
BseNI ACTGG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 2 cut(s) 223, 758
BseYI CCCAGC 1 cut(s) 8
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 616, 820
BsiSI CCGG 1 cut(s) 497
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 3 cut(s) 172, 616, 820
Bsp143I GATC 4 cut(s) 60, 76, 264, 399
Bsp1720I GCTNAGC 2 cut(s) 150, 571
BspACI CCGC 2 cut(s) 629, 873
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 3 cut(s) 142, 584, 771
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 511
BsrI ACTGG 1 cut(s) 237
BssMI GATC 4 cut(s) 60, 76, 264, 399
Bst2UI CCWGG 2 cut(s) 217, 386
Bst6I CTCTTC 1 cut(s) 784
BstC8I GCNNGC 3 cut(s) 391, 722, 853
BstDEI CTNAG 5 cut(s) 150, 240, 435, 571, 758
BstF5I GGATG 2 cut(s) 170, 550
BstKTI GATC 4 cut(s) 63, 79, 267, 402
BstMBI GATC 4 cut(s) 60, 76, 264, 399
BstMWI GCNNNNNNNGC 3 cut(s) 390, 782, 802
BstNI CCWGG 2 cut(s) 217, 386
BstNSI RCATGY 3 cut(s) 393, 570, 724
BstSCI CCNGG 2 cut(s) 215, 384
BstSFI CTRYAG 1 cut(s) 539
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 223, 758
BstV2I GAAGAC 2 cut(s) 600, 631
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 170, 550
BtsI GCAGTG 2 cut(s) 567, 666
BtsIMutI CAGTG 3 cut(s) 516, 567, 666
Cac8I GCNNGC 3 cut(s) 391, 722, 853
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 382
CviAII CATG 7 cut(s) 53, 125, 390, 567, 721, 823, 831
CviJI RGCY 8 cut(s) 13, 154, 215, 236, 384, 434, 706, 796
CviKI_1 RGCY 8 cut(s) 13, 154, 215, 236, 384, 434, 706, 796
DdeI CTNAG 5 cut(s) 150, 240, 435, 571, 758
DpnI GATC 4 cut(s) 62, 78, 266, 401
DpnII GATC 4 cut(s) 60, 76, 264, 399
DraI TTTAAA 3 cut(s) 330, 685, 699
Eam1104I CTCTTC 1 cut(s) 784
EarI CTCTTC 1 cut(s) 784
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 215, 384
FaeI CATG 7 cut(s) 56, 128, 393, 570, 724, 826, 834
FatI CATG 7 cut(s) 52, 124, 389, 566, 720, 822, 830
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 237, 747
FokI GGATG 2 cut(s) 177, 557
Fsp4HI GCNGC 2 cut(s) 237, 747
FspBI CTAG 1 cut(s) 657
GluI GCNGC 2 cut(s) 237, 747
GsaI CCCAGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 497
Hin1II CATG 7 cut(s) 56, 128, 393, 570, 724, 826, 834
HinfI GANTC 3 cut(s) 548, 596, 677
HpaII CCGG 1 cut(s) 497
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 3 cut(s) 99, 469, 583
Hpy188III TCNNGA 2 cut(s) 17, 53
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 244, 494
HpyCH4V TGCA 8 cut(s) 262, 527, 560, 644, 691, 805, 841, 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 390, 782, 802
HpyF3I CTNAG 5 cut(s) 150, 240, 435, 571, 758
Hsp92II CATG 7 cut(s) 56, 128, 393, 570, 724, 826, 834
Kzo9I GATC 4 cut(s) 60, 76, 264, 399
LpnPI CCDG 9 cut(s) 202, 218, 229, 371, 398, 510, 527, 745, 837
Lsp1109I GCAGC 2 cut(s) 223, 758
LweI GCATC 5 cut(s) 249, 313, 499, 584, 631
MaeI CTAG 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 562
MalI GATC 4 cut(s) 62, 78, 266, 401
MboI GATC 4 cut(s) 60, 76, 264, 399
MboII GAAGA 5 cut(s) 295, 605, 633, 636, 771
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 3 cut(s) 172, 616, 820
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 5 cut(s) 136, 301, 488, 786, 787
MseI TTAA 8 cut(s) 71, 104, 329, 684, 698, 770, 810, 883
MspA1I CMGCKG 1 cut(s) 873
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 217, 386
MunI CAATTG 1 cut(s) 555
MvaI CCWGG 2 cut(s) 217, 386
MwoI GCNNNNNNNGC 3 cut(s) 390, 782, 802
NdeI CATATG 1 cut(s) 529
NdeII GATC 4 cut(s) 60, 76, 264, 399
NlaIII CATG 7 cut(s) 56, 128, 393, 570, 724, 826, 834
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 562
NspI RCATGY 3 cut(s) 393, 570, 724
PaeI GCATGC 2 cut(s) 393, 724
PagI TCATGA 1 cut(s) 52
PfeI GAWTC 2 cut(s) 548, 677
PkrI GCNGC 2 cut(s) 238, 748
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
Psp6I CCWGG 2 cut(s) 215, 384
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 2 cut(s) 215, 384
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 264
SaqAI TTAA 8 cut(s) 71, 104, 329, 684, 698, 770, 810, 883
SatI GCNGC 2 cut(s) 237, 747
Sau3AI GATC 4 cut(s) 60, 76, 264, 399
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 2 cut(s) 217, 386
SduI GDGCHC 3 cut(s) 172, 616, 820
SetI ASST 6 cut(s) 147, 156, 436, 449, 480, 733
SfaNI GCATC 5 cut(s) 249, 313, 499, 584, 631
SfcI CTRYAG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 2 cut(s) 393, 724
SsiI CCGC 2 cut(s) 629, 873
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 215, 384
TaqI TCGA 1 cut(s) 402
TfiI GAWTC 2 cut(s) 548, 677
Tru1I TTAA 8 cut(s) 71, 104, 329, 684, 698, 770, 810, 883
Tru9I TTAA 8 cut(s) 71, 104, 329, 684, 698, 770, 810, 883
TscAI CASTG 3 cut(s) 523, 567, 673
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 2 cut(s) 236, 746
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 3 cut(s) 41, 561, 669
TspRI CASTG 3 cut(s) 523, 567, 673
XapI RAATTY 4 cut(s) 157, 193, 331, 799
XceI RCATGY 3 cut(s) 393, 570, 724
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.