Rh6DG023900

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000376
Physical Location & Seq
Reverse (-)
2136563 .. 2143533
6971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG023900.1

Sequence Viewer

Length: 3894 bp
ATGTGGATTACAACTGTAAGCTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCCCTTGTTAGTGGCAATGAGGGTGTATTTGTTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAAGGCTTACGCTTGGAAAGATGGATTTCGTGATTTTAGAAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGGAGTAATCCTGGTTGGACAAGAAACTTACTGAAGCTTGTTGAAGATGTATTATCTCATGGGCTATATCACCCGCTCCACATTGACGGGTTTTTGAGCTTATCCAGTACTGATAAAGACGTCACATCCAATGATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGGGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCATTTGCAGCAGAAAGCATAGGAGTATTGTTTCACTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACCGCAAGTACCAAAATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAACGTCTACGATGTCGTCTGAGAGTCGTATTGTTGAAAAACATTATTGCTCAACTAGTTTCAATCCAGAAACACGAAAGTCGCTTCACAATTTTTTTTTTTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGATGGATGTTCATTGCACATTTAAAGCTATAAATAATGTACTTTCGGTCTTTATGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAGGGTTTATAATATCATCATCTCATTGTCCTCCGATTTAATTCAGCTGTCAGTTACACACTCAGATAGTTTTACTCTAATAGCAAGTGAGGTACTTTCTGCCGTGGGCTATCTTTTGGAAATTGAATATGATGTTCTAGAGAATGATCTGGTAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCATTGGGGTTTCTTTGGTGGATTCTCTGGATAGATGCTCATTATTCTCCAAGATAACAGATACTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTGAATAATACTATCTTTGCATTGTGTAATGCAATAAGGGTTATTAATTTACATAATAGCGATGGCGAACTGAACTATACTAGATGTGTCATTCCTTTTCATGGTGAAGCATATGCAAAAGCCGTGGAAATGGTATTATCTGCGCATGAATTCAAAAGTGCAATCCATAAAGCAATGAAGTCCATACCAGAAGGACAAGCAACTCCTGCCGATGCTTATATAGGCAAGCTGCAATCCTTATGCCTCCAGATTTGTCAAGAAAGATGTCTGCAGAAATGGGAGATTCGTTCTCCTCATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGAATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTTCTTTCTGTTATTCAATCTGTTTCAAACATCTTTTGTAAGGACCGTGCAGCTGATTCTTGTCCTTTAACTTATGTAATGCATGCTATGGCTTGTGAAAGGCTTGTGGATTTGAATAGTGGTATAAAGTCTTTTGAATATTTGATTGAAAATGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAAGAGGCAGCAGGACTCACGGGATTTATGATGGAGCACCTCGCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACGACTAATAATAAGATGGTTAACTATGAAAGTGATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAGTATTCATGCATGGTGCCCTCATGCCTCTAAAAAGGATTTGAAGAGATTCCTTTCTCTTTTAATCCATACTTCAATTCCCCATGGAAGAAGCAGCTTTGGGGTGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGGCATTGCATCAAATCTCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGAAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAACCTTGCTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGGAAATGTGAAGAATGGAATTTCATGCGTTGTGATCAACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCGAACTCAACCTCTGGAAACTTGAACCAATCTCCGAACTCAACCTCCGGAAACTTGAACCAATCTCCGAACCAAATCCAAGCTCAGCATCATCTGACATCTGTGAAGACTCTGTAATTGGTAGTGTTCATAGAAGAAGACCGCGCTTGAAAGATGCAAATAGTGTTGTTAGTGTTCTCACTGCTGTTGATTCATTTGAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATGCTAAAAGGTGATTTCCCCAACGCAGCATTTTTACTCAGGCAGTTGTTAATCGCCTCTTCTGCTATTTTGAGGCTAAATTTGCATATTAATAGCGCTCCCATGTTGTCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCTTGTTATTGGAATCAGTTTCAGCGGACGCAAGTCAGGTGCCACACTTCTATTATTTTGTGTGTTTAGATAGTGTTCTGACGTATCTGGAAGAATTAGGGAATCATTTTCCTTTGACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTAGGATGCATAACTTTACAAGGGAAAAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCATAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTCGCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCGGGAAGGGTGCACAGTGAGGTATGACATATGTGCTGGATGTGAAAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTCTGGAATTTGTTTCAGAGTACACTAATCTTCTATGAGACATTCACTCAGAGTAAAGATGATAGTGATCCAGATCCAGGAACAGTCATTCTTATGTGTGTTGATGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTACGTATACCTTCAGCACTTTTTCAAGATTTCCATCTTTTAAAACATTCTAAATGTCCTGTTCCAAATGATTCTTCAACAAGTCCAAATAACCAACCATCCGACCCGGTAGCCAGTGTACTTGTCTCTGACTGTGCTAAGAATTACAGTAATTCTTTTGTAATTTCTAGTGAATGCGAGGGGTATGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTCTTTATTGTTTGGAGACATTGGATGCTGTTGTGGTAGCCAGGGAAGGCTTCTTTTCATGGGAAGTAGAAGAAGGAGTCAAATGTGCCTGTTCTCCCAGAAGGATTTATGAAGAGCTAAGACATCAAAAAGAGGTCTTTGGTCCACACTGTTACCACTTTTTAGCTTATTACATACGGGTTTATTCAGGATATGGCCCCTGCAAAACAGGCATCAAAAGTGTCTTATTGTGGTATGCTGTATCTGTATTCACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

1297

Amino Acids

145.85

Weight (kDa)

6.4

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 1114 - 1287 2.7e-08 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AatII GACGTC 1 cut(s) 354
Acc16I TGCGCA 1 cut(s) 1332
AccB1I GGYRCC 2 cut(s) 1971, 2770
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 2 cut(s) 608, 3424
AccII CGCG 1 cut(s) 2497
AccIII TCCGGA 1 cut(s) 2400
AciI CCGC 6 cut(s) 305, 537, 1742, 2495, 2756, 3145
AclWI GGATC 4 cut(s) 1528, 3308, 3314, 3402
AcoI YGGCCR 1 cut(s) 1083
AcuI CTGAAG 6 cut(s) 284, 1542, 1836, 2117, 3018, 3414
AcyI GRCGYC 1 cut(s) 351
AdeI CACNNNGTG 1 cut(s) 3891
AfaI GTAC 9 cut(s) 340, 544, 711, 822, 993, 1551, 3268, 3354, 3537
AfeI AGCGCT 2 cut(s) 531, 2683
AfiI CCNNNNNNNGG 3 cut(s) 366, 1289, 3323
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 7 cut(s) 125, 241, 396, 1185, 2195, 3322, 3674
AjuI GAANNNNNNNTTGG 4 cut(s) 3096, 3128, 3475, 3507
AleI CACNNNNGTG 1 cut(s) 1939
AloI GAACNNNNNNTCC 2 cut(s) 2382, 2414
Alw21I GWGCWC 3 cut(s) 1800, 2073, 3158
Alw26I GTCTC 4 cut(s) 215, 3278, 3547, 3644
Alw44I GTGCAC 1 cut(s) 3154
AlwI GGATC 4 cut(s) 1528, 3308, 3314, 3402
AlwNI CAGNNNCTG 1 cut(s) 1148
Aor13HI TCCGGA 1 cut(s) 2400
Aor51HI AGCGCT 2 cut(s) 531, 2683
AoxI GGCC 3 cut(s) 772, 1083, 3829
ApaI GGGCCC 1 cut(s) 776
ApaLI GTGCAC 1 cut(s) 3154
ApeKI GCWGC 8 cut(s) 443, 461, 1417, 1616, 1769, 2049, 2216, 2612
AseI ATTAAT 3 cut(s) 1160, 1233, 2676
Asp700I GAANNNNTTC 2 cut(s) 2003, 3204
AspLEI GCGC 4 cut(s) 532, 1333, 2499, 2684
AspS9I GGNCC 5 cut(s) 772, 773, 1609, 3776, 3830
AsuC2I CCSGG 1 cut(s) 3524
AsuHPI GGTGA 5 cut(s) 293, 1201, 1304, 1733, 2609
AvaII GGWCC 2 cut(s) 1609, 3776
BaeGI GKGCMC 3 cut(s) 776, 1976, 3158
BalI TGGCCA 1 cut(s) 1085
BanI GGYRCC 2 cut(s) 1971, 2770
BanII GRGCYC 3 cut(s) 776, 2908, 3133
BbsI GAAGAC 2 cut(s) 2466, 2497
Bbv12I GWGCWC 3 cut(s) 1800, 2073, 3158
BbvI GCAGC 8 cut(s) 430, 473, 1404, 1628, 1781, 2061, 2203, 2624
BceAI ACGGC 2 cut(s) 986, 1295
BciT130I CCWGG 7 cut(s) 127, 243, 398, 1187, 2197, 3324, 3676
BclI TGATCA 2 cut(s) 499, 2286
BcnI CCSGG 1 cut(s) 3524
BcoDI GTCTC 4 cut(s) 215, 3278, 3547, 3644
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 7 cut(s) 657, 1037, 1269, 2909, 3048, 3134, 3585
BfmI CTRYAG 4 cut(s) 1171, 1457, 2894, 3108
BfoI RGCGCY 2 cut(s) 533, 2685
BglII AGATCT 2 cut(s) 1746, 2244
BisI GCNGC 8 cut(s) 444, 462, 1418, 1617, 1770, 2050, 2217, 2613
BlpI GCTNAGC 1 cut(s) 2437
BlsI GCNGC 8 cut(s) 445, 463, 1419, 1618, 1771, 2051, 2218, 2614
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 8 cut(s) 127, 243, 398, 1187, 2197, 3324, 3524, 3676
Bme18I GGWCC 2 cut(s) 1609, 3776
BmgT120I GGNCC 5 cut(s) 772, 773, 1609, 3776, 3830
BmiI GGNNCC 5 cut(s) 723, 774, 1973, 2772, 3832
BmrFI CCNGG 8 cut(s) 127, 243, 398, 1187, 2197, 3324, 3524, 3676
BoxI GACNNNNGTC 1 cut(s) 2763
BpiI GAAGAC 2 cut(s) 2466, 2497
BplI GAGNNNNNCTC 2 cut(s) 854, 886
BpmI CTGGAG 2 cut(s) 206, 1418
Bpu1102I GCTNAGC 1 cut(s) 2437
BpuEI CTTGAG 3 cut(s) 134, 206, 755
BpuMI CCSGG 1 cut(s) 3524
BsaAI YACGTR 1 cut(s) 3422
BsaBI GATNNNNATC 4 cut(s) 2243, 3312, 3318, 3450
BsaHI GRCGYC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 6 cut(s) 34, 397, 1002, 1311, 2038, 3675
BsaWI WCCGGW 1 cut(s) 2400
BsaXI ACNNNNNCTCC 6 cut(s) 2293, 2323, 2382, 2412, 3188, 3218
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 1289, 3323
Bse1I ACTGG 5 cut(s) 336, 1153, 2142, 3360, 3531
Bse3DI GCAATG 5 cut(s) 79, 793, 1368, 1922, 2108
Bse8I GATNNNNATC 4 cut(s) 2243, 3312, 3318, 3450
BseAI TCCGGA 1 cut(s) 2400
BseBI CCWGG 7 cut(s) 127, 243, 398, 1187, 2197, 3324, 3676
BseDI CCNNGG 6 cut(s) 34, 397, 1002, 1311, 2038, 3675
BseJI GATNNNNATC 4 cut(s) 2243, 3312, 3318, 3450
BseLI CCNNNNNNNGG 3 cut(s) 366, 1289, 3323
BseMI GCAATG 5 cut(s) 79, 793, 1368, 1922, 2108
BseMII CTCAG 7 cut(s) 36, 612, 864, 975, 2451, 2638, 3308
BseNI ACTGG 5 cut(s) 336, 1153, 2142, 3360, 3531
BseRI GAGGAG 1 cut(s) 1470
BseSI GKGCMC 3 cut(s) 776, 1976, 3158
BseXI GCAGC 8 cut(s) 430, 473, 1404, 1628, 1781, 2061, 2203, 2624
BseYI CCCAGC 1 cut(s) 3018
BsgI GTGCAG 2 cut(s) 1635, 1917
Bsh1236I CGCG 1 cut(s) 2497
BshFI GGCC 3 cut(s) 774, 1085, 3831
BshNI GGYRCC 2 cut(s) 1971, 2770
BsiHKAI GWGCWC 3 cut(s) 1800, 2073, 3158
BsiSI CCGG 2 cut(s) 2401, 3524
BslI CCNNNNNNNGG 3 cut(s) 366, 1289, 3323
BsmAI GTCTC 4 cut(s) 215, 3278, 3547, 3644
BsmI GAATGC 2 cut(s) 457, 3596
BsnI GGCC 3 cut(s) 774, 1085, 3831
Bso31I GGTCTC 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 772
Bsp1286I GDGCHC 7 cut(s) 776, 1800, 1976, 2073, 2908, 3133, 3158
Bsp13I TCCGGA 1 cut(s) 2400
Bsp1407I TGTACA 1 cut(s) 1549
Bsp1720I GCTNAGC 1 cut(s) 2437
Bsp19I CCATGG 1 cut(s) 2038
BspACI CCGC 6 cut(s) 305, 537, 1742, 2495, 2756, 3145
BspANI GGCC 3 cut(s) 774, 1085, 3831
BspCNI CTCAG 7 cut(s) 35, 613, 865, 974, 2450, 2637, 3307
BspEI TCCGGA 1 cut(s) 2400
BspFNI CGCG 1 cut(s) 2497
BspHI TCATGA 1 cut(s) 2953
BspLI GGNNCC 5 cut(s) 723, 774, 1973, 2772, 3832
BspMAI CTGCAG 2 cut(s) 1461, 3112
BspPI GGATC 4 cut(s) 1528, 3308, 3314, 3402
BspQI GCTCTTC 1 cut(s) 3741
BspT107I GGYRCC 2 cut(s) 1971, 2770
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 5 cut(s) 79, 793, 1368, 1922, 2108
BsrGI TGTACA 1 cut(s) 1549
BsrI ACTGG 5 cut(s) 336, 1153, 2142, 3360, 3531
BssECI CCNNGG 6 cut(s) 34, 397, 1002, 1311, 2038, 3675
BssNAI GTATAC 1 cut(s) 3425
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 34, 2038
Bst1107I GTATAC 1 cut(s) 3425
Bst2UI CCWGG 7 cut(s) 127, 243, 398, 1187, 2197, 3324, 3676
Bst6I CTCTTC 6 cut(s) 893, 1572, 1756, 1994, 2650, 3741
BstACI GRCGYC 1 cut(s) 351
BstAPI GCANNNNNTGC 4 cut(s) 452, 1394, 2945, 3233
BstAUI TGTACA 1 cut(s) 1549
BstBAI YACGTR 1 cut(s) 3422
BstC8I GCNNGC 6 cut(s) 1415, 1650, 2588, 2719, 3374, 3378
BstDSI CCRYGG 3 cut(s) 1002, 1311, 2038
BstFNI CGCG 1 cut(s) 2497
BstH2I RGCGCY 2 cut(s) 533, 2685
BstHHI GCGC 4 cut(s) 532, 1333, 2499, 2684
BstMAI GTCTC 4 cut(s) 215, 3278, 3547, 3644
BstNI CCWGG 7 cut(s) 127, 243, 398, 1187, 2197, 3324, 3676
BstNSI RCATGY 4 cut(s) 1652, 2590, 3380, 3407
BstPAI GACNNNNGTC 1 cut(s) 2763
BstSCI CCNGG 8 cut(s) 125, 241, 396, 1185, 2195, 3322, 3522, 3674
BstSFI CTRYAG 4 cut(s) 1171, 1457, 2894, 3108
BstSLI GKGCMC 3 cut(s) 776, 1976, 3158
BstSNI TACGTA 1 cut(s) 3422
BstUI CGCG 1 cut(s) 2497
BstV1I GCAGC 8 cut(s) 430, 473, 1404, 1628, 1781, 2061, 2203, 2624
BstV2I GAAGAC 2 cut(s) 2466, 2497
BstX2I RGATCY 4 cut(s) 1746, 2244, 3319, 3394
BstXI CCANNNNNNTGG 2 cut(s) 230, 553
BstYI RGATCY 4 cut(s) 1746, 2244, 3319, 3394
BstZ17I GTATAC 1 cut(s) 3425
BsuRI GGCC 3 cut(s) 774, 1085, 3831
BtgI CCRYGG 3 cut(s) 1002, 1311, 2038
BtgZI GCGATG 1 cut(s) 1263
BtsI GCAGTG 2 cut(s) 2532, 3075
BtsIMutI CAGTG 7 cut(s) 58, 2132, 2532, 3075, 3165, 3538, 3781
Cac8I GCNNGC 6 cut(s) 1415, 1650, 2588, 2719, 3374, 3378
CaiI CAGNNNCTG 1 cut(s) 1148
CciI TCATGA 1 cut(s) 2953
CfoI GCGC 4 cut(s) 532, 1333, 2499, 2684
Cfr13I GGNCC 5 cut(s) 772, 773, 1609, 3776, 3830
CseI GACGC 1 cut(s) 2768
Csp6I GTAC 9 cut(s) 339, 543, 710, 821, 992, 1550, 3267, 3353, 3536
CspCI CAANNNNNGTGG 2 cut(s) 1293, 1328
CviQI GTAC 9 cut(s) 339, 543, 710, 821, 992, 1550, 3267, 3353, 3536
DraI TTTAAA 4 cut(s) 135, 805, 2565, 3459
DraIII CACNNNGTG 1 cut(s) 3891
EaeI YGGCCR 1 cut(s) 1083
Eam1104I CTCTTC 6 cut(s) 893, 1572, 1756, 1994, 2650, 3741
EarI CTCTTC 6 cut(s) 893, 1572, 1756, 1994, 2650, 3741
Eco105I TACGTA 1 cut(s) 3422
Eco130I CCWWGG 2 cut(s) 34, 2038
Eco24I GRGCYC 3 cut(s) 776, 2908, 3133
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 1609, 3776
Eco47III AGCGCT 2 cut(s) 531, 2683
Eco57I CTGAAG 6 cut(s) 284, 1542, 1836, 2117, 3018, 3414
EcoO109I RGGNCCY 1 cut(s) 773
EcoRI GAATTC 3 cut(s) 1337, 2173, 3038
EcoRII CCWGG 7 cut(s) 125, 241, 396, 1185, 2195, 3322, 3674
EcoT14I CCWWGG 2 cut(s) 34, 2038
EcoT22I ATGCAT 5 cut(s) 457, 840, 1650, 1969, 2918
EcoT38I GRGCYC 3 cut(s) 776, 2908, 3133
ErhI CCWWGG 2 cut(s) 34, 2038
FauI CCCGC 2 cut(s) 312, 3138
FauNDI CATATG 2 cut(s) 1300, 3173
FbaI TGATCA 2 cut(s) 499, 2286
FblI GTMKAC 2 cut(s) 608, 3424
Fnu4HI GCNGC 8 cut(s) 444, 462, 1418, 1617, 1770, 2050, 2217, 2613
FriOI GRGCYC 3 cut(s) 776, 2908, 3133
Fsp4HI GCNGC 8 cut(s) 444, 462, 1418, 1617, 1770, 2050, 2217, 2613
FspBI CTAG 7 cut(s) 657, 1037, 1269, 2909, 3048, 3134, 3585
FspI TGCGCA 1 cut(s) 1332
GlaI GCGC 4 cut(s) 531, 1332, 2498, 2683
GluI GCNGC 8 cut(s) 444, 462, 1418, 1617, 1770, 2050, 2217, 2613
GsaI CCCAGC 1 cut(s) 3022
GsuI CTGGAG 2 cut(s) 206, 1418
HaeII RGCGCY 2 cut(s) 533, 2685
HaeIII GGCC 3 cut(s) 774, 1085, 3831
HapII CCGG 2 cut(s) 2401, 3524
HgaI GACGC 1 cut(s) 2768
HhaI GCGC 4 cut(s) 532, 1333, 2499, 2684
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 4 cut(s) 530, 1331, 2497, 2682
HinP1I GCGC 4 cut(s) 530, 1331, 2497, 2682
HincII GTYRAC 2 cut(s) 1178, 1870
HindII GTYRAC 2 cut(s) 1178, 1870
HindIII AAGCTT 4 cut(s) 266, 1054, 2698, 3618
HpaI GTTAAC 1 cut(s) 1870
HpaII CCGG 2 cut(s) 2401, 3524
HphI GGTGA 5 cut(s) 293, 1201, 1304, 1733, 2609
HpyCH4IV ACGT 4 cut(s) 351, 605, 2813, 3421
HpySE526I ACGT 4 cut(s) 351, 605, 2813, 3421
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 4 cut(s) 530, 1331, 2497, 2682
Kpn2I TCCGGA 1 cut(s) 2400
Ksp22I TGATCA 2 cut(s) 499, 2286
KspAI GTTAAC 1 cut(s) 1870
LguI GCTCTTC 1 cut(s) 3741
LmnI GCTCC 6 cut(s) 186, 312, 721, 878, 1795, 2689
Lsp1109I GCAGC 8 cut(s) 430, 473, 1404, 1628, 1781, 2061, 2203, 2624
MaeI CTAG 7 cut(s) 657, 1037, 1269, 2909, 3048, 3134, 3585
MaeII ACGT 4 cut(s) 351, 605, 2813, 3421
MaeIII GTNAC 6 cut(s) 352, 952, 1721, 2898, 3417, 3785
MbiI CCGCTC 1 cut(s) 307
MfeI CAATTG 1 cut(s) 3212
MflI RGATCY 4 cut(s) 1746, 2244, 3319, 3394
MhlI GDGCHC 7 cut(s) 776, 1800, 1976, 2073, 2908, 3133, 3158
MlsI TGGCCA 1 cut(s) 1085
MluNI TGGCCA 1 cut(s) 1085
MlyI GAGTC 4 cut(s) 634, 1770, 2456, 3720
MmeI TCCRAC 2 cut(s) 227, 3543
Mox20I TGGCCA 1 cut(s) 1085
Mph1103I ATGCAT 5 cut(s) 457, 840, 1650, 1969, 2918
MroI TCCGGA 1 cut(s) 2400
MroXI GAANNNNTTC 2 cut(s) 2003, 3204
MscI TGGCCA 1 cut(s) 1085
MslI CAYNNNNRTG 2 cut(s) 1939, 3338
Msp20I TGGCCA 1 cut(s) 1085
MspA1I CMGCKG 3 cut(s) 946, 1619, 2756
MspI CCGG 2 cut(s) 2401, 3524
MspR9I CCNGG 8 cut(s) 127, 243, 398, 1187, 2197, 3324, 3524, 3676
MunI CAATTG 1 cut(s) 3212
Mva1269I GAATGC 2 cut(s) 457, 3596
MvaI CCWGG 7 cut(s) 127, 243, 398, 1187, 2197, 3324, 3676
MvnI CGCG 1 cut(s) 2497
NciI CCSGG 1 cut(s) 3524
NcoI CCATGG 1 cut(s) 2038
NdeI CATATG 2 cut(s) 1300, 3173
NlaIV GGNNCC 5 cut(s) 723, 774, 1973, 2772, 3832
NmuCI GTSAC 2 cut(s) 352, 1721
NsbI TGCGCA 1 cut(s) 1332
NsiI ATGCAT 5 cut(s) 457, 840, 1650, 1969, 2918
NspI RCATGY 4 cut(s) 1652, 2590, 3380, 3407
OliI CACNNNNGTG 1 cut(s) 1939
PaeI GCATGC 3 cut(s) 1652, 2590, 3380
PagI TCATGA 1 cut(s) 2953
PciSI GCTCTTC 1 cut(s) 3741
PctI GAATGC 2 cut(s) 457, 3596
PdmI GAANNNNTTC 2 cut(s) 2003, 3204
PfoI TCCNGGA 1 cut(s) 3322
PkrI GCNGC 8 cut(s) 445, 463, 1419, 1618, 1771, 2051, 2218, 2614
PleI GAGTC 4 cut(s) 633, 1770, 2456, 3719
PpsI GAGTC 4 cut(s) 633, 1770, 2456, 3719
Ppu21I YACGTR 1 cut(s) 3422
PshAI GACNNNNGTC 1 cut(s) 2763
PshBI ATTAAT 3 cut(s) 1160, 1233, 2676
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 7 cut(s) 125, 241, 396, 1185, 2195, 3322, 3674
PspFI CCCAGC 1 cut(s) 3018
PspGI CCWGG 7 cut(s) 125, 241, 396, 1185, 2195, 3322, 3674
PspN4I GGNNCC 5 cut(s) 723, 774, 1973, 2772, 3832
PspOMI GGGCCC 1 cut(s) 772
PspPI GGNCC 5 cut(s) 772, 773, 1609, 3776, 3830
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstI CTGCAG 2 cut(s) 1461, 3112
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 4 cut(s) 1746, 2244, 3319, 3394
PvuII CAGCTG 2 cut(s) 946, 1619
RsaI GTAC 9 cut(s) 340, 544, 711, 822, 993, 1551, 3268, 3354, 3537
RsaNI GTAC 9 cut(s) 339, 543, 710, 821, 992, 1550, 3267, 3353, 3536
RseI CAYNNNNRTG 2 cut(s) 1939, 3338
SapI GCTCTTC 1 cut(s) 3741
SatI GCNGC 8 cut(s) 444, 462, 1418, 1617, 1770, 2050, 2217, 2613
Sau96I GGNCC 5 cut(s) 772, 773, 1609, 3776, 3830
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 4 cut(s) 634, 1770, 2456, 3720
ScrFI CCNGG 8 cut(s) 127, 243, 398, 1187, 2197, 3324, 3524, 3676
SduI GDGCHC 7 cut(s) 776, 1800, 1976, 2073, 2908, 3133, 3158
SfcI CTRYAG 4 cut(s) 1171, 1457, 2894, 3108
SinI GGWCC 2 cut(s) 1609, 3776
SmiMI CAYNNNNRTG 2 cut(s) 1939, 3338
SmlI CTYRAG 3 cut(s) 113, 185, 734
SmoI CTYRAG 3 cut(s) 113, 185, 734
SnaBI TACGTA 1 cut(s) 3422
SpeI ACTAGT 1 cut(s) 656
SphI GCATGC 3 cut(s) 1652, 2590, 3380
SsiI CCGC 6 cut(s) 305, 537, 1742, 2495, 2756, 3145
SspI AATATT 3 cut(s) 1706, 1833, 3026
SspMI CTAG 7 cut(s) 657, 1037, 1269, 2909, 3048, 3134, 3585
StyD4I CCNGG 8 cut(s) 125, 241, 396, 1185, 2195, 3322, 3522, 3674
StyI CCWWGG 2 cut(s) 34, 2038
TaiI ACGT 4 cut(s) 354, 608, 2816, 3424
TaqI TCGA 1 cut(s) 3123
TaqII GACCGA 1 cut(s) 817
TatI WGTACW 7 cut(s) 338, 709, 820, 1549, 3266, 3352, 3535
TscAI CASTG 7 cut(s) 58, 2132, 2539, 3075, 3165, 3538, 3788
TseFI GTSAC 2 cut(s) 352, 1721
TseI GCWGC 8 cut(s) 443, 461, 1417, 1616, 1769, 2049, 2216, 2612
Tsp45I GTSAC 2 cut(s) 352, 1721
TspRI CASTG 7 cut(s) 58, 2132, 2539, 3075, 3165, 3538, 3788
VneI GTGCAC 1 cut(s) 3154
VpaK11BI GGWCC 2 cut(s) 1609, 3776
VspI ATTAAT 3 cut(s) 1160, 1233, 2676
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 4 cut(s) 1652, 2590, 3380, 3407
XcmI CCANNNNNNNNNTGG 1 cut(s) 1935
XmiI GTMKAC 2 cut(s) 608, 3424
XmnI GAANNNNTTC 2 cut(s) 2003, 3204
XspI CTAG 7 cut(s) 657, 1037, 1269, 2909, 3048, 3134, 3585
ZraI GACGTC 1 cut(s) 352
ZrmI AGTACT 1 cut(s) 340
Zsp2I ATGCAT 5 cut(s) 457, 840, 1650, 1969, 2918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.