Prupe.8G159900_v2.0.a1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000376
Physical Location & Seq
Forward (+)
16882216 .. 16892894
10679 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G159900.2

Sequence Viewer

Length: 6387 bp
ATGGCCGGCTCCGAAGCTACGCCTAAAGAGAAGCGGACGAAGAAGAACAAAAAGAGAAAGCAAAGGAGCCTTGGAGAATCTGAAAGGCCTTCCAAAACGCACCGGCTTAGGGTCTCGGAGAAAGAGAGTGAACCACAAGAAGTGGAAGTAAAACGAGCTGAAAAGCCCCAGCTCAGAGAACCCAATCAGGAGCTCGAACAAGGTGGTCCATGGAGGAACCTGGAGTTAGTTTTGTCCATTCAGAACAAAGAACTTGATCTTCAGAAGAAGGTGGAACTAGCTTATGGCTTTGTCATATTGAGAGTGAAAGAAGAAGGCAGCAAGAGTGATCAGGATAATCAAGCAGTGAATATGTCACGTTTAATAATTTTTGTTAATGATTGGATCCAGTCATTATTGATTTCTTCAGGAAAGAAAATTCAGAGTGGCGGAGAGATGCATCAAGCTGAAGTGATTGAGACATATTTGGATTTTAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGGAGTCTTTGAAATTGAATGTTTCTCTAAGTTTCTCCCGGAACCTTTTACGCTCTATTTGTTTGATTGCAAGAAATGCACTGTCCTTACTGAACAAAACATCTTCACATCAAACAGATTTATTTTCCATTGGCGAAGGGTTACCATTGTACAATACCATGCTTGATTGCATTTCTTTGGTATTTTCATCCCATGGAGGCTTGTCGAATGAAAATTTAGACCTGTGGGTTTCAACTGTAGGTGCAGTGCTTGATCTTGTACACACATTTTACATGGAAAATCTTGTTAGTGGCAATGAGGGTGACTTTGTTTTCCGGTTTTTGTGCTTGGTTCTTGAGCCATTTGCCAAGTTTTTTAGGGCCCACCCAGCTCGGAAGAATGGATTTCGTGATTTCATCGATAAACTCCTTGAGCCTCTGTTGCATCTCTTAGGTCTCTTGCATCTTCAGATTGATGTAAGTAATCCTGGTAGAGCAAGAAACTTACTGAAGCTAGTTGAAGAAGTACTATCTCATGGGCTGTATCACCCAGTCCACATTGATGGATTTTTGAACTTATGCAGCAGTGAAAGATATTCCACCTTCAATTATGGGAAGTCAAAAGACTCAAAAACAATGCTGAAGAGTTATCACAGACATTTATTTGATAAGCTGGAAAAAATTTTGGCTGCAAAGAATGCTTTGGCAGTGGAAAGCATGGGAGAACTTTTTCACTTGCTTATTGATCAAGTTCAAAAGCTAAAAAGGGCTTCAGTGCCGGCCGAAAATACAAAAATGATGGGGAAGACTGAAGCTTCAAAGCAAATAGAACATAGTTTAATGGGTCATACTTCAAAGATGTCTTCTGGGAGTAGTACTGCACTAGTTGAAAATAATTACTGCTCAACTAGTTTCAGTGCAGAAACACGAAAGTCACTTCTTGATTTTTTTGTACTGATTATGGAGCCTCTTCTGCTTGAGATTAATGGCTATCTTGAAAGTAAGCTGGAAGTGGGACCCATGTTGTCGGATGTTCATTGCACACTTAAATCTATTAATAATTTACTTTCTGGCTTTATGCATGAAAAGGTTTATGTGAGAACAGAGGACACGTCAGAGGGAGCTTGCCTTAATTTCTTGAAGAAGGTCTATAATATGATTATATCATTGTCCTCCAATTTAATTCAGTCGTCAAAATATGGTGTAGTTAACAGGACACACATGGATACGTTAACTTTAATAGCCAATGAGGTACTTTCTGCTGTAGGGTATCTTTTGGAAATTGAATATGAGGTTATAGAGAATGATTTGGTAACCTTGTGGCTTCTGATGCTTTCTTACTTAGCCATTGGTCTTTCCCTGATGGAAGTTCCGGATCGGTGCTCATTATCTTTGAAGATAACAGATATTGGATGCCAATTAGTTATTCTCTATAGTCAACTTCGCCAGGTGAATAATACTATTTTTGCATTGTGTAAAGCAATAAGGCTTCTAAATTCACGTAATGGTGCTGGTGAACTGAAATATACTAGATTTGTGATTTCTTTACATGGTGAAGCTTATGCAAGATCAGTGGAAATGCTATTATGTACGCAAGAGTTTAAGATTGCAATACAACAAGCTATTAAGTCCATACCAGAAGGACAAGCAAGTGGGTGTATTGGGCAGTTAACATTGGATATATCAGAATCTCTAGAGTGGCTGAAAATTAGTTGTTTGAAAGCTGATGAAAAAGAATTTGGCAAACGGGATGGACGAAGTAGCTTGCAGAACTTTAATCTAGAAGCTGAACTTTTGGGGAGAGGGTTGTCTGAAGGGTATGCACTAGTGCTAGACTCGTTGTTTGTTACACCTGGAAACTGTAACCTCCTTGGAGTTTCTGTAAAGGATCTTATAGCAGTAATTTGTGCTTGCATGAGTAGTCTGGTAGGACTACAGCCAGATGCTGTAAATGAGTTCCTCTTTACTGTCACAGGAAAAGGATTTGACAATGAGACAGACGAAAACAAAAATAATCTTCAGATATTTGGATTGTCCACTCATTGGGTGTTTGTGTTCTTCTTTCGATTGTATATGTCCTGCCGAAGCTTATATAGGTCAGCAACGAGCCTTATGCCTCCAGATTTATCAAGAAAGATGTCAGCAGCAATGGGAGATTCATTCACATCATACTCTGGTAGCGATTGGATTGATATGACTGACTGGATCAATGGGGAATATTTTTCTTGGATCGTTCAACCTTCAGCTTCTCTTCCTGTTGTTATTCAATCCATTTCAAACATCTATTGTAAGGACAGTGCAGCCGATTCTTCTCCTTTGACTTATGTGATGCATGCTATGGCTGTTAGACGGCTTGTCGATTTGAATAGGCATATAAAGTCTTTTGAATATTTGATGCAAAATAATGAAAATCTGGTGCAAGTCAGGTTGCTTGAGGATGCTGGCTTGTCAAGGTGTCGTAAAAGAAGCAAAAAGTTGGAAAGGCACATCTCTGTTTTGAGGGAAGAGGCTTCAGGTCTTGCTGGTTTTATGATGGAGCACCTATCATTAGTGCCCGAAGATCAACAGCCAATGTCCATTTCTGGTGATACAACTTGTAATAAGATGATTTCCCATGAAAGTGATGAATGGGATTTCAGTGTTTGTGCTTTGAACAAGAAGTCATTGCCAACTGCAATATGGTGGATTCTTTGCCAGAATATTGATACTTGGTGCACTCATGCCACTAAAAAGAATTTGAAGAAATTCCTTTCTCTTTTAATCCATACTTCCCTTTCCCGTGTAAGAAGCAGCTTTGGGGTGGTTAGAGAGTACAATAACCATGCAGCTGACAGGCTGAAGAAAGTAACCTTGCATCAAATCTCATCACAATGCTTCATTGACTCCATTCTGTATGAGCAAAGATTTTTCTGCAGGTATTTTGCATCAACGTTTTGCCGTGCATTGGAGAAATCTACATTACCATTGATCAGTGACTTTTCATCTGGCAATTTTGATTTCAAATCATCACCTGATTGGCCGAAGGTTTTAAATTCCCTGGAGAACTCATCAGTGGTTGTTTCATGTAAGAATCACTACATATTTGATTGTTCCTCAGCAGCAAGCCCGGTCACTCATTCTTCTGATGAGCTGCGTAAAGGAAGTTTCAAGGAACAAAAAGATCTCCAATCGACCATCATGAAATTTATAGCTTGCCAGAGTTTACTTAATCTTTTGTGTTGTATGCCAAAAAGTCATTTCAACTCAAGAGCATTTTCACTTTATGTCACTTCTATTCTCAACCTTGAAAGGCTTGTTGTTGGCGGCTTATTAGATTATCAGAATGCATTATACTCGCATCACTATCACGAGCTCTTCAGATTGTTTGTGTCTTGTCGGAAGGCCTTGAAATATATAATTCTGGCTTGTGAGGGGAAGACAGCAGATAGTCAAACCTCACATACTTTAGTGTTCTTTGAGGATTCGTTTCCTATTTTATGGCTTTACAAGTCAGTGTATGCGGTTGTTGGGCTTGAAGAGTCATTGCCAAAAGATAATTGCCGTCCAGTCAGTGATATGATCTTGTCCTTGATGGATCACACATTTTATGTGTTTCTCACATTAAGTAAATATCAGTCTAATCATGCTGTTCATTTCTCTAAAGTTGCTGAACTGAATGCCGGACTTGTCCATGAACATAGTAGTTTAAGTGAATCTGATATGTGCTTGGATTCTTCCGACTATATTGAAGCTTGGAAAAGTGTAACCATTATTGCTAAGAGTTTGAAGGAACAGATGCAAAGCTTACTGGTAAATTTGAAGGATGCCCTTTGTAATGGAAAAGTGGGGATTGGTGTTGATGGTTTAAATTTGAACAAGTTCTCATCCTTAATTTCTTGCATTAGTGGGTTTTTATGGGGCCTAGCATGTTTTGTGAACCATACAGATTCGAGAAGTAGTGATCATAAAGTAAACTCATCAAGGCAGAAACTTGAACCCATCTCTGAACTTCACCTCTGTATAGATGTTTTTGCAGAATTCTGTAGTCTGCTCTTACCAATGTTAGTTTGTGACAGTAGTCAACAGTCCAGAACTCTATGTGACTCTCAAAATCTTCAAAAGTCAGACTTCAATGCAGATTTGTTGGGTGTGCCTGAAGGCACTGATGTTGAGACTGATATTGCAGGTGTTGAACTGCATGATGAATCTGGTGCTGCAATGACAGCATCATCTGACATCCATGCTTACTCTGGGTCTGGTAGTGTTCGTAGAAGAAGGTTGCACTTGGAAGGTGCAAATTGTGCTGCCAGTGCACTGAATGACATTGATTCATTTATATTGCAGTCTTTGAATAGGCCTTTGTTGAGACGCCTGCTAAATGGTGATTACCCTGGTGCAGCATTTTTGCTCAGGCAGTTGTTAATTGCATCTTCAGCTATTTTAAGGCTAAGTTTGCATATGAATAGTCCTCCCCTGTCTTCAAGCTTGGTGCATACTTTTACTAGCATTACACAAGTCTTGTTATTGGAATCAACGGACATGAATCATGTGCCATGCTTTTTTTATTTTGTGTGTTTAGATGGTGTTCTGAAGTATTTGGAAGAAATAGCGAATCATTTTCCTCTGACAAATCCTACCTTATCCAGAAGTTTGTATGACAAGATGGTTCAGCTACAGTTAAGGGCTTTAGGAAAATGCATAACTTTACAGGGGAAACGAGCCACCCTAGTATCTCATGAGACAGAGTCAAGCACCAAAATGCTCCATTCTCCTATGGAATTTTCTGAAGCATCTCTGTCTGGCCGGCCATACTTATTGGATGAACTTAAAGCTAGGTTGAGGTCATCGTTCACGGTGTTTATAAAGAAACCATCAGAGTTGCATCTTTTATCTGCTGTACAAGCTATAGAGAGAGCACTAGTTGGTGTGCGGGATGGGTGCACCATGAGTTATGACATACATACTGGAAGCGTAGATGGGGGAAAAGTTTCTTCAGTTGTTGCAGCTGGCATTGATTGCTTGGATTTGATTCTAGAACATGTTTCAGGACGCAAACGTTTGAATGTGGTTAAAAGACACATTCAGAGCTTTATTTCTAGCTTGTTCAATGTTATTCTGAACTTGCAGAGTCCAGTAATCTTTTATGAGAGATCGATCCAGAATAAAGGGGATACTGATCCAGATCCAGGAACAATCATTCTTATGTGTGTTGACGTACTGGCAAGAATTTCCGGCAAGCATGCTCTGTACCAAATGGAGGCCTGGCATGTAGCACAATCTTTACGTATACCGTCAGCACTTTTTCAAGACTTCCATCTTTTAAAACTTTCTGAAGCTCCTGTTCCCGATGATTCTTCAACAGTTCCAAATAACCAAATCTCTAATTCAGTAGCAAGTAAACATTTCTCTGGCGTAGATAGGCAATACTCAATCGACCTATTTGCTGCTTGCTGCCGGTTATTGCATAATGTTCTGAAGCATCACAAAACTGAATGTGAACGGTGCATTGCCGTACTTCAAGCTTCTGTTGGTGTTCTTCTTCATTGTTTGGAGACAGTGGATGCTAATGCAGTCGTCAGGAAAGGTTTCTTTTCATGGGAAGTGGAAGAGGGAGTCAAATGTGCAGGTTGTCTCCGAAGAATTTATGAAGAGATAAGACATCAAAAAGATGTCTTTGGTCCGCACTGTTCCCAATTTTTATCCAATTACATATGGGTTTATTCAGGACATGGGCCCCGTAAAACAGGCATCAAAAGGGAAATAGACGAAGCTCTAAGACCAGGTGTATATGCTTTAATAGATACTTGCTCAGCAGATGATCTTCAACGCCTTCATACCTTATTTGGAGAGGGTCCTTGCAGAAACACTCTAGCCACATTGAAACATGATTACGAACTAAATTTCCAATACCAGGGAAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

2129

Amino Acids

238.95

Weight (kDa)

6.61

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5324
AarI CACCTGC 1 cut(s) 4637
Acc36I ACCTGC 3 cut(s) 3387, 4637, 6077
AccB7I CCANNNNNTGG 1 cut(s) 2526
AccI GTMKAC 1 cut(s) 5749
AccIII TCCGGA 1 cut(s) 1855
AciI CCGC 6 cut(s) 34, 429, 3786, 3983, 5392, 6143
AclI AACGTT 2 cut(s) 3413, 5518
AcoI YGGCCR 5 cut(s) 3, 1263, 3500, 5263, 5267
AcyI GRCGYC 1 cut(s) 4831
AfiI CCNNNNNNNGG 6 cut(s) 109, 2526, 3427, 5648, 5719, 6373
AflIII ACRYGT 2 cut(s) 1593, 5500
AhdI GACNNNNNGTC 1 cut(s) 2837
AhlI ACTAGT 4 cut(s) 1366, 1391, 2308, 5380
AjiI CACGTC 1 cut(s) 1596
AjuI GAANNNNNNNTTGG 6 cut(s) 1893, 1925, 2205, 2237, 3046, 3078
AloI GAACNNNNNNTCC 2 cut(s) 6348, 6380
Alw21I GWGCWC 8 cut(s) 195, 1868, 3024, 3200, 3837, 4777, 5380, 5405
Alw26I GTCTC 9 cut(s) 118, 452, 944, 2471, 4628, 4822, 5195, 6008, 6098
Alw44I GTGCAC 3 cut(s) 3196, 4773, 5401
AlwNI CAGNNNCTG 1 cut(s) 2429
Aor13HI TCCGGA 1 cut(s) 1855
ApaI GGGCCC 2 cut(s) 868, 6198
ApaLI GTGCAC 3 cut(s) 3196, 4773, 5401
ArsI GACNNNNNNTTYG 2 cut(s) 2309, 2341
AseI ATTAAT 2 cut(s) 1467, 1539
Asp700I GAANNNNTTC 5 cut(s) 1212, 3227, 4340, 5449, 6047
AspS9I GGNCC 9 cut(s) 206, 864, 865, 1499, 4381, 6140, 6194, 6195, 6314
AsuC2I CCSGG 2 cut(s) 544, 3590
AsuHPI GGTGA 9 cut(s) 818, 1022, 1945, 2009, 2048, 3080, 3483, 4466, 4856
AvaII GGWCC 4 cut(s) 206, 1499, 6140, 6314
BaeGI GKGCMC 6 cut(s) 868, 3039, 3200, 4777, 5405, 6198
BaeI ACNNNNGTAYC 2 cut(s) 5175, 5208
BamHI GGATCC 1 cut(s) 384
BanII GRGCYC 4 cut(s) 195, 868, 3837, 6198
BauI CACGAG 1 cut(s) 3830
BbsI GAAGAC 4 cut(s) 1295, 1338, 3905, 4932
Bbv12I GWGCWC 8 cut(s) 195, 1868, 3024, 3200, 3837, 4777, 5380, 5405
BbvCI CCTCAGC 1 cut(s) 3577
BceAI ACGGC 4 cut(s) 2849, 3405, 4008, 5957
BcgI CGANNNNNNTGC 6 cut(s) 2578, 2612, 3798, 3832, 5885, 5919
BciVI GTATCC 2 cut(s) 1702, 5626
BclI TGATCA 4 cut(s) 328, 1228, 3450, 4423
BcnI CCSGG 2 cut(s) 544, 3590
BcoDI GTCTC 9 cut(s) 118, 452, 944, 2471, 4628, 4822, 5195, 6008, 6098
BcuI ACTAGT 4 cut(s) 1366, 1391, 2308, 5380
BfmI CTRYAG 8 cut(s) 741, 1746, 1915, 2417, 3394, 4504, 5135, 5367
BfuAI ACCTGC 3 cut(s) 3387, 4637, 6077
BfuI GTATCC 2 cut(s) 1702, 5626
BglII AGATCT 1 cut(s) 3643
BlpI GCTNAGC 1 cut(s) 6271
BmcAI AGTACT 2 cut(s) 1011, 1360
Bme18I GGWCC 4 cut(s) 206, 1499, 6140, 6314
BmeRI GACNNNNNGTC 1 cut(s) 2837
BmgBI CACGTC 1 cut(s) 1596
BmgT120I GGNCC 9 cut(s) 206, 864, 865, 1499, 4381, 6140, 6194, 6195, 6314
BmrI ACTGGG 1 cut(s) 1028
BmuI ACTGGG 1 cut(s) 1028
BoxI GACNNNNGTC 1 cut(s) 4539
BpiI GAAGAC 4 cut(s) 1295, 1338, 3905, 4932
BpmI CTGGAG 3 cut(s) 242, 2586, 3542
Bpu10I CCTNAGC 3 cut(s) 107, 3577, 4871
Bpu1102I GCTNAGC 1 cut(s) 6271
BpuEI CTTGAG 5 cut(s) 860, 935, 1481, 2936, 3712
BpuMI CCSGG 2 cut(s) 544, 3590
Bsa29I ATCGAT 2 cut(s) 903, 5615
BsaAI YACGTR 2 cut(s) 1985, 5747
BsaBI GATNNNNATC 2 cut(s) 5637, 5643
BsaHI GRCGYC 1 cut(s) 4831
BsaI GGTCTC 2 cut(s) 118, 944
BsaJI CCNNGG 7 cut(s) 70, 209, 697, 2353, 3519, 4852, 6373
BsaWI WCCGGW 2 cut(s) 819, 1855
BsaXI ACNNNNNCTCC 2 cut(s) 2349, 2379
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 2526, 3427, 5648, 5719, 6373
Bse118I RCCGGY 5 cut(s) 5, 102, 1261, 5265, 5916
Bse1I ACTGG 9 cut(s) 388, 1034, 2690, 4028, 4275, 4770, 5431, 5594, 5685
Bse3DI GCAATG 7 cut(s) 805, 1519, 2637, 3146, 4004, 4686, 5967
Bse8I GATNNNNATC 2 cut(s) 5637, 5643
BseAI TCCGGA 1 cut(s) 1855
BseCI ATCGAT 2 cut(s) 903, 5615
BseDI CCNNGG 7 cut(s) 70, 209, 697, 2353, 3519, 4852, 6373
BseJI GATNNNNATC 2 cut(s) 5637, 5643
BseLI CCNNNNNNNGG 6 cut(s) 109, 2526, 3427, 5648, 5719, 6373
BseMI GCAATG 7 cut(s) 805, 1519, 2637, 3146, 4004, 4686, 5967
BseMII CTCAG 4 cut(s) 187, 3591, 4885, 6285
BseNI ACTGG 9 cut(s) 388, 1034, 2690, 4028, 4275, 4770, 5431, 5594, 5685
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 6 cut(s) 868, 3039, 3200, 4777, 5405, 6198
BseX3I CGGCCG 1 cut(s) 1263
BseYI CCCAGC 3 cut(s) 168, 480, 871
BsgI GTGCAG 6 cut(s) 768, 1347, 1422, 2802, 4878, 6105
Bsh1285I CGRYCG 1 cut(s) 1266
BshVI ATCGAT 2 cut(s) 903, 5615
BsiEI CGRYCG 1 cut(s) 1266
BsiHKAI GWGCWC 8 cut(s) 195, 1868, 3024, 3200, 3837, 4777, 5380, 5405
BslFI GGGAC 1 cut(s) 1512
BslI CCNNNNNNNGG 6 cut(s) 109, 2526, 3427, 5648, 5719, 6373
BsmAI GTCTC 9 cut(s) 118, 452, 944, 2471, 4628, 4822, 5195, 6008, 6098
BsmBI CGTCTC 1 cut(s) 4822
BsmFI GGGAC 1 cut(s) 1512
BsmI GAATGC 3 cut(s) 1186, 3811, 4144
Bso31I GGTCTC 2 cut(s) 118, 944
Bsp120I GGGCCC 2 cut(s) 864, 6194
Bsp13I TCCGGA 1 cut(s) 1855
Bsp1407I TGTACA 3 cut(s) 654, 763, 5359
Bsp1720I GCTNAGC 1 cut(s) 6271
Bsp19I CCATGG 2 cut(s) 209, 697
BspACI CCGC 6 cut(s) 34, 429, 3786, 3983, 5392, 6143
BspCNI CTCAG 4 cut(s) 186, 3590, 4884, 6284
BspDI ATCGAT 2 cut(s) 903, 5615
BspEI TCCGGA 1 cut(s) 1855
BspHI TCATGA 2 cut(s) 3660, 5197
BspMAI CTGCAG 1 cut(s) 3398
BspMI ACCTGC 3 cut(s) 3387, 4637, 6077
BspQI GCTCTTC 1 cut(s) 3842
BspTNI GGTCTC 2 cut(s) 118, 944
BsrDI GCAATG 7 cut(s) 805, 1519, 2637, 3146, 4004, 4686, 5967
BsrFI RCCGGY 5 cut(s) 5, 102, 1261, 5265, 5916
BsrGI TGTACA 3 cut(s) 654, 763, 5359
BsrI ACTGG 9 cut(s) 388, 1034, 2690, 4028, 4275, 4770, 5431, 5594, 5685
BssAI RCCGGY 5 cut(s) 5, 102, 1261, 5265, 5916
BssECI CCNNGG 7 cut(s) 70, 209, 697, 2353, 3519, 4852, 6373
BssNAI GTATAC 1 cut(s) 5750
BssNI GRCGYC 1 cut(s) 4831
BssSI CACGAG 1 cut(s) 3830
BssT1I CCWWGG 4 cut(s) 70, 209, 697, 2353
Bst1107I GTATAC 1 cut(s) 5750
Bst2BI CACGAG 1 cut(s) 3830
Bst6I CTCTTC 8 cut(s) 1121, 1458, 2739, 2982, 3842, 3993, 6063, 6105
BstACI GRCGYC 1 cut(s) 4831
BstAPI GCANNNNNTGC 4 cut(s) 581, 1181, 4763, 5478
BstAUI TGTACA 3 cut(s) 654, 763, 5359
BstBAI YACGTR 2 cut(s) 1985, 5747
BstDSI CCRYGG 2 cut(s) 209, 697
BstEII GGTNACC 2 cut(s) 645, 1795
BstMAI GTCTC 9 cut(s) 118, 452, 944, 2471, 4628, 4822, 5195, 6008, 6098
BstMCI CGRYCG 1 cut(s) 1266
BstNSI RCATGY 5 cut(s) 2819, 4392, 5504, 5705, 5732
BstPAI GACNNNNGTC 1 cut(s) 4539
BstPI GGTNACC 2 cut(s) 645, 1795
BstSFI CTRYAG 8 cut(s) 741, 1746, 1915, 2417, 3394, 4504, 5135, 5367
BstSLI GKGCMC 6 cut(s) 868, 3039, 3200, 4777, 5405, 6198
BstSNI TACGTA 1 cut(s) 5747
BstV2I GAAGAC 4 cut(s) 1295, 1338, 3905, 4932
BstX2I RGATCY 4 cut(s) 384, 2371, 3643, 5644
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 4 cut(s) 384, 2371, 3643, 5644
BstZ17I GTATAC 1 cut(s) 5750
BstZI CGGCCG 1 cut(s) 1263
Bsu15I ATCGAT 2 cut(s) 903, 5615
BsuI GTATCC 2 cut(s) 1702, 5626
BsuTUI ATCGAT 2 cut(s) 903, 5615
BtgI CCRYGG 2 cut(s) 209, 697
BtrI CACGTC 1 cut(s) 1596
BtsI GCAGTG 4 cut(s) 351, 756, 1075, 1197
BveI ACCTGC 3 cut(s) 3387, 4637, 6077
CaiI CAGNNNCTG 1 cut(s) 2429
CciI TCATGA 2 cut(s) 3660, 5197
Cfr10I RCCGGY 5 cut(s) 5, 102, 1261, 5265, 5916
Cfr13I GGNCC 9 cut(s) 206, 864, 865, 1499, 4381, 6140, 6194, 6195, 6314
ClaI ATCGAT 2 cut(s) 903, 5615
CseI GACGC 2 cut(s) 4839, 5520
CsiI ACCWGGT 1 cut(s) 6241
CspCI CAANNNNNGTGG 2 cut(s) 2037, 2072
DraI TTTAAA 3 cut(s) 3513, 4329, 5784
DriI GACNNNNNGTC 1 cut(s) 2837
EaeI YGGCCR 5 cut(s) 3, 1263, 3500, 5263, 5267
EagI CGGCCG 1 cut(s) 1263
Eam1104I CTCTTC 8 cut(s) 1121, 1458, 2739, 2982, 3842, 3993, 6063, 6105
Eam1105I GACNNNNNGTC 1 cut(s) 2837
EarI CTCTTC 8 cut(s) 1121, 1458, 2739, 2982, 3842, 3993, 6063, 6105
EciI GGCGGA 1 cut(s) 444
Ecl136II GAGCTC 2 cut(s) 193, 3835
EclXI CGGCCG 1 cut(s) 1263
Eco105I TACGTA 1 cut(s) 5747
Eco130I CCWWGG 4 cut(s) 70, 209, 697, 2353
Eco147I AGGCCT 4 cut(s) 88, 3866, 4819, 5723
Eco24I GRGCYC 4 cut(s) 195, 868, 3837, 6198
Eco31I GGTCTC 2 cut(s) 118, 944
Eco47I GGWCC 4 cut(s) 206, 1499, 6140, 6314
Eco52I CGGCCG 1 cut(s) 1263
Eco53kI GAGCTC 2 cut(s) 193, 3835
Eco91I GGTNACC 2 cut(s) 645, 1795
EcoICRI GAGCTC 2 cut(s) 193, 3835
EcoO109I RGGNCCY 5 cut(s) 864, 1499, 4381, 6195, 6314
EcoO65I GGTNACC 2 cut(s) 645, 1795
EcoRI GAATTC 1 cut(s) 4499
EcoT14I CCWWGG 4 cut(s) 70, 209, 697, 2353
EcoT22I ATGCAT 5 cut(s) 441, 1566, 2817, 3811, 5162
EcoT38I GRGCYC 4 cut(s) 195, 868, 3837, 6198
ErhI CCWWGG 4 cut(s) 70, 209, 697, 2353
Esp3I CGTCTC 1 cut(s) 4822
FalI AAGNNNNNCTT 4 cut(s) 2259, 2291, 4574, 4606
FaqI GGGAC 1 cut(s) 1512
FauI CCCGC 1 cut(s) 5385
FauNDI CATATG 2 cut(s) 4920, 6173
FbaI TGATCA 4 cut(s) 328, 1228, 3450, 4423
FblI GTMKAC 1 cut(s) 5749
FriOI GRGCYC 4 cut(s) 195, 868, 3837, 6198
FseI GGCCGGCC 1 cut(s) 5269
GsaI CCCAGC 3 cut(s) 172, 484, 875
GsuI CTGGAG 3 cut(s) 242, 2586, 3542
HgaI GACGC 2 cut(s) 4839, 5520
Hin1I GRCGYC 1 cut(s) 4831
HincII GTYRAC 6 cut(s) 1693, 1716, 1922, 2154, 4544, 5674
HindII GTYRAC 6 cut(s) 1693, 1716, 1922, 2154, 4544, 5674
HindIII AAGCTT 7 cut(s) 1296, 2040, 2569, 4212, 4264, 4945, 5982
HpaI GTTAAC 3 cut(s) 1693, 1716, 2154
HphI GGTGA 9 cut(s) 818, 1022, 1945, 2009, 2048, 3080, 3483, 4466, 4856
HpyCH4IV ACGT 8 cut(s) 358, 1595, 1712, 1984, 3413, 5518, 5676, 5746
HpySE526I ACGT 8 cut(s) 358, 1595, 1712, 1984, 3413, 5518, 5676, 5746
Hsp92I GRCGYC 1 cut(s) 4831
KflI GGGWCCC 1 cut(s) 1499
Kpn2I TCCGGA 1 cut(s) 1855
KroI GCCGGC 3 cut(s) 5, 1261, 5265
KroNI GCCGGC 3 cut(s) 7, 1263, 5267
Ksp22I TGATCA 4 cut(s) 328, 1228, 3450, 4423
KspAI GTTAAC 3 cut(s) 1693, 1716, 2154
LguI GCTCTTC 1 cut(s) 3842
LmnI GCTCC 8 cut(s) 14, 66, 190, 1447, 1604, 3019, 5229, 5803
MabI ACCWGGT 1 cut(s) 6241
MaeII ACGT 8 cut(s) 358, 1595, 1712, 1984, 3413, 5518, 5676, 5746
MflI RGATCY 4 cut(s) 384, 2371, 3643, 5644
MlyI GAGTC 9 cut(s) 518, 1103, 2312, 3359, 4010, 4559, 5216, 5599, 6084
MmeI TCCRAC 4 cut(s) 1491, 2940, 3839, 4224
Mph1103I ATGCAT 5 cut(s) 441, 1566, 2817, 3811, 5162
MroI TCCGGA 1 cut(s) 1855
MroNI GCCGGC 3 cut(s) 5, 1261, 5265
MroXI GAANNNNTTC 5 cut(s) 1212, 3227, 4340, 5449, 6047
MslI CAYNNNNRTG 5 cut(s) 1044, 3102, 3352, 5219, 5663
MspA1I CMGCKG 2 cut(s) 3311, 5468
Mva1269I GAATGC 3 cut(s) 1186, 3811, 4144
NaeI GCCGGC 3 cut(s) 7, 1263, 5267
NciI CCSGG 2 cut(s) 544, 3590
NcoI CCATGG 2 cut(s) 209, 697
NdeI CATATG 2 cut(s) 4920, 6173
NgoMIV GCCGGC 3 cut(s) 5, 1261, 5265
NmuCI GTSAC 9 cut(s) 354, 806, 1416, 2452, 3455, 3592, 3748, 4532, 4562
NsiI ATGCAT 5 cut(s) 441, 1566, 2817, 3811, 5162
NspI RCATGY 5 cut(s) 2819, 4392, 5504, 5705, 5732
PaeI GCATGC 2 cut(s) 2819, 5705
PagI TCATGA 2 cut(s) 3660, 5197
PaqCI CACCTGC 1 cut(s) 4637
PceI AGGCCT 4 cut(s) 88, 3866, 4819, 5723
PciI ACATGT 1 cut(s) 5500
PciSI GCTCTTC 1 cut(s) 3842
PcsI WCGNNNNNNNCGW 1 cut(s) 2236
PctI GAATGC 3 cut(s) 1186, 3811, 4144
PdiI GCCGGC 3 cut(s) 7, 1263, 5267
PdmI GAANNNNTTC 5 cut(s) 1212, 3227, 4340, 5449, 6047
PflFI GACNNNGTC 1 cut(s) 5206
PflMI CCANNNNNTGG 1 cut(s) 2526
PfoI TCCNGGA 2 cut(s) 542, 5647
PleI GAGTC 9 cut(s) 517, 1103, 2312, 3359, 4009, 4559, 5215, 5598, 6083
PpsI GAGTC 9 cut(s) 517, 1103, 2312, 3359, 4009, 4559, 5215, 5598, 6083
Ppu21I YACGTR 2 cut(s) 1985, 5747
PpuMI RGGWCCY 2 cut(s) 1499, 6314
PscI ACATGT 1 cut(s) 5500
PshAI GACNNNNGTC 1 cut(s) 4539
PshBI ATTAAT 2 cut(s) 1467, 1539
PsiI TTATAA 1 cut(s) 5324
Psp124BI GAGCTC 2 cut(s) 195, 3837
Psp1406I AACGTT 2 cut(s) 3413, 5518
Psp5II RGGWCCY 2 cut(s) 1499, 6314
PspEI GGTNACC 2 cut(s) 645, 1795
PspFI CCCAGC 3 cut(s) 168, 480, 871
PspOMI GGGCCC 2 cut(s) 864, 6194
PspPI GGNCC 9 cut(s) 206, 864, 865, 1499, 4381, 6140, 6194, 6195, 6314
PspPPI RGGWCCY 2 cut(s) 1499, 6314
PstI CTGCAG 1 cut(s) 3398
PstNI CAGNNNCTG 1 cut(s) 2429
PsuI RGATCY 4 cut(s) 384, 2371, 3643, 5644
PsyI GACNNNGTC 1 cut(s) 5206
PvuII CAGCTG 2 cut(s) 3311, 5468
RigI GGCCGGCC 1 cut(s) 5269
RseI CAYNNNNRTG 5 cut(s) 1044, 3102, 3352, 5219, 5663
SacI GAGCTC 2 cut(s) 195, 3837
SapI GCTCTTC 1 cut(s) 3842
Sau96I GGNCC 9 cut(s) 206, 864, 865, 1499, 4381, 6140, 6194, 6195, 6314
ScaI AGTACT 2 cut(s) 1011, 1360
SchI GAGTC 9 cut(s) 518, 1103, 2312, 3359, 4010, 4559, 5216, 5599, 6084
SexAI ACCWGGT 1 cut(s) 6241
SfcI CTRYAG 8 cut(s) 741, 1746, 1915, 2417, 3394, 4504, 5135, 5367
SinI GGWCC 4 cut(s) 206, 1499, 6140, 6314
SmiMI CAYNNNNRTG 5 cut(s) 1044, 3102, 3352, 5219, 5663
SmlI CTYRAG 5 cut(s) 839, 914, 1460, 2915, 3727
SmoI CTYRAG 5 cut(s) 839, 914, 1460, 2915, 3727
SnaBI TACGTA 1 cut(s) 5747
SpeI ACTAGT 4 cut(s) 1366, 1391, 2308, 5380
SphI GCATGC 2 cut(s) 2819, 5705
SseBI AGGCCT 4 cut(s) 88, 3866, 4819, 5723
SsiI CCGC 6 cut(s) 34, 429, 3786, 3983, 5392, 6143
SspI AATATT 3 cut(s) 2702, 2873, 3184
SstI GAGCTC 2 cut(s) 195, 3837
StuI AGGCCT 4 cut(s) 88, 3866, 4819, 5723
StyI CCWWGG 4 cut(s) 70, 209, 697, 2353
TaiI ACGT 8 cut(s) 361, 1598, 1715, 1987, 3416, 5521, 5679, 5749
TaqI TCGA 9 cut(s) 195, 710, 903, 2548, 2841, 3653, 4412, 5615, 5895
TatI WGTACW 7 cut(s) 654, 763, 1009, 1358, 1435, 3294, 5359
TauI GCSGC 1 cut(s) 3789
TseFI GTSAC 9 cut(s) 354, 806, 1416, 2452, 3455, 3592, 3748, 4532, 4562
Tsp45I GTSAC 9 cut(s) 354, 806, 1416, 2452, 3455, 3592, 3748, 4532, 4562
TspGWI ACGGA 1 cut(s) 5012
Tth111I GACNNNGTC 1 cut(s) 5206
Van91I CCANNNNNTGG 1 cut(s) 2526
VneI GTGCAC 3 cut(s) 3196, 4773, 5401
VpaK11BI GGWCC 4 cut(s) 206, 1499, 6140, 6314
VspI ATTAAT 2 cut(s) 1467, 1539
XbaI TCTAGA 3 cut(s) 2176, 2263, 5494
XceI RCATGY 5 cut(s) 2819, 4392, 5504, 5705, 5732
XcmI CCANNNNNNNNNTGG 2 cut(s) 3159, 4709
XmiI GTMKAC 1 cut(s) 5749
XmnI GAANNNNTTC 5 cut(s) 1212, 3227, 4340, 5449, 6047
ZrmI AGTACT 2 cut(s) 1011, 1360
Zsp2I ATGCAT 5 cut(s) 441, 1566, 2817, 3811, 5162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.