Rmu_sc0002202.1_g000016

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000376
Physical Location & Seq
Reverse (-)
79963 .. 80586
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000016.1.cds

Sequence Viewer

Length: 624 bp
atgttgtcaagcttggtgcataagtttgctgggattatgcaagtcttgttattggaatcagcggacccaattcaggtgccacacttctattattttgtgtgtttagatggtgttctgaagtatctggaagaattagggaatcattttcctttgactaatcctaccttatccagagatctgtttgacaagatggttcagctacaattacgggctctagggaaatgcataactttacaagggaaaagagcaactcttgcatctcatgaaacaagcaccatcacacccataggagaaaggagattttctgaagcatcatctttttctggctgggaatatttattggatgaattcaaagctaggttgaggtcatcattggcagtgttcataaagaaatcaacagagttgcatctccaatctgcagttcaagctatcgagagagccctagttggtgtgcgggaagggtgcacagtgaggtatgacatatgtgctggaagtgaagatagaggaaaggtttcttcaattgttgcgtctggcattgattgcttggtttttgttctggaatttgtttcaggtaatattatttcacacatttatagagcgtatgaaatggttctaccacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

207

Amino Acids

23.14

Weight (kDa)

6.65

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 2 cut(s) 62, 454
AcsI RAATTY 2 cut(s) 347, 560
AcuI CTGAAG 2 cut(s) 137, 327
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 352, 425, 519
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 4 cut(s) 12, 199, 356, 428
AluI AGCT 4 cut(s) 12, 199, 356, 428
Alw21I GWGCWC 1 cut(s) 467
Alw44I GTGCAC 1 cut(s) 463
ApaLI GTGCAC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 347, 560
Asp700I GAANNNNTTC 2 cut(s) 511, 609
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 214, 442
Bbv12I GWGCWC 1 cut(s) 467
BccI CCATC 3 cut(s) 101, 184, 284
BfaI CTAG 3 cut(s) 215, 357, 443
BfmI CTRYAG 1 cut(s) 417
BglII AGATCT 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 66, 78
BmsI GCATC 3 cut(s) 266, 320, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 467
BseYI CCCAGC 2 cut(s) 29, 327
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 73
Bsp1286I GDGCHC 3 cut(s) 214, 442, 467
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 2 cut(s) 62, 454
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 66, 78
BspMAI CTGCAG 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 76
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 469
BstAPI GCANNNNNTGC 2 cut(s) 254, 540
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 254, 425, 540
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 384, 474
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 516
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 12, 199, 212, 327, 356, 428, 440
CviKI_1 RGCY 7 cut(s) 12, 199, 212, 327, 356, 428, 440
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 214, 442
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 137, 327
EcoRI GAATTC 1 cut(s) 347
EcoT22I ATGCAT 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 214, 442
FaeI CATG 1 cut(s) 266
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 447
FauNDI CATATG 1 cut(s) 482
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 2 cut(s) 214, 442
FspBI CTAG 3 cut(s) 215, 357, 443
GsaI CCCAGC 2 cut(s) 33, 331
HgaI GACGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 56, 139
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 2 cut(s) 117, 307
Hpy188III TCNNGA 5 cut(s) 125, 171, 263, 433, 557
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 7 cut(s) 19, 40, 225, 257, 406, 419, 465
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 425, 540
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 175
LweI GCATC 3 cut(s) 266, 320, 415
MaeI CTAG 3 cut(s) 215, 357, 443
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 140, 507, 509
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 3 cut(s) 214, 442, 467
MluCI AATT 6 cut(s) 69, 131, 203, 347, 519, 560
MnlI CCTC 3 cut(s) 357, 465, 497
Mph1103I ATGCAT 1 cut(s) 227
MroXI GAANNNNTTC 2 cut(s) 511, 609
MseI TTAA 1 cut(s) 622
MspA1I CMGCKG 1 cut(s) 62
MunI CAATTG 1 cut(s) 519
MwoI GCNNNNNNNGC 3 cut(s) 254, 425, 540
NdeI CATATG 1 cut(s) 482
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 2 cut(s) 66, 78
NsiI ATGCAT 1 cut(s) 227
PagI TCATGA 1 cut(s) 262
PdmI GAANNNNTTC 2 cut(s) 511, 609
PfeI GAWTC 2 cut(s) 56, 139
PspFI CCCAGC 2 cut(s) 29, 327
PspN4I GGNNCC 2 cut(s) 66, 78
PspPI GGNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 1 cut(s) 622
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 64
SduI GDGCHC 3 cut(s) 214, 442, 467
SfaNI GCATC 3 cut(s) 266, 320, 415
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 64
Sse9I AATT 6 cut(s) 69, 131, 203, 347, 519, 560
SsiI CCGC 2 cut(s) 62, 454
SspI AATATT 2 cut(s) 335, 577
SspMI CTAG 3 cut(s) 215, 357, 443
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 432
TasI AATT 6 cut(s) 69, 131, 203, 347, 519, 560
TfiI GAWTC 2 cut(s) 56, 139
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 2 cut(s) 384, 474
TspDTI ATGAA 4 cut(s) 279, 360, 373, 618
TspRI CASTG 2 cut(s) 384, 474
VneI GTGCAC 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 2 cut(s) 347, 560
XmnI GAANNNNTTC 2 cut(s) 511, 609
XspI CTAG 3 cut(s) 215, 357, 443
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.