Rmu_ssc0000087.1_g000055

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000087.1
OG0000376
Physical Location & Seq
Forward (+)
229963 .. 230391
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000087.1_g000055.1.cds

Sequence Viewer

Length: 429 bp
atggcttgtgaaaggcttgtgcatttgaatagtcgtataaagtcttttgagtatttgattgaaaacggtgacaatctggtgcaagttgtggagatcgattctttgaggcaagaggcagcaggactcactggttttatgatggagcacctctcattagtgtctgaagatcaacagcaaatattcacttctgctgatacgactaataacaagatggttatctacgaaagtgatgaatgggatttcagtatttgctctgtgaacaagaagtcattgccaactgcactttggtgggttgtttgccaaaatattcatgcatggtgccctcatgcctctaaaaaagatttgaagagattcctctcttttaatccttacttcccttccctacataagaagcagctttgggatggttatagcgcacaagaaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

142

Amino Acids

16.46

Weight (kDa)

5.46

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 183
AgsI TTSAA 3 cut(s) 28, 62, 346
AleI CACNNNNGTG 1 cut(s) 286
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw21I GWGCWC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 116, 394
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 128, 406
BccI CCATC 3 cut(s) 133, 205, 398
BisI GCNGC 2 cut(s) 117, 395
BlsI GCNGC 2 cut(s) 118, 396
BmiI GGNNCC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 215
BseMI GCAATG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 2 cut(s) 128, 406
BsgI GTGCAG 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 147, 323
Bsp143I GATC 2 cut(s) 93, 166
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 133
BssMI GATC 2 cut(s) 93, 166
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 341
BstF5I GGATG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 2 cut(s) 96, 169
BstMBI GATC 2 cut(s) 93, 166
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 128, 406
Bsu15I ATCGAT 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 416
ClaI ATCGAT 1 cut(s) 96
CviAII CATG 4 cut(s) 311, 315, 326, 426
CviJI RGCY 3 cut(s) 5, 16, 397
CviKI_1 RGCY 3 cut(s) 5, 16, 397
DpnI GATC 2 cut(s) 95, 168
DpnII GATC 2 cut(s) 93, 166
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 316
FaeI CATG 4 cut(s) 314, 318, 329, 429
FaiI YATR 8 cut(s) 38, 137, 312, 316, 327, 387, 411, 427
FatI CATG 4 cut(s) 310, 314, 325, 425
Fnu4HI GCNGC 2 cut(s) 117, 395
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 2 cut(s) 117, 395
GlaI GCGC 1 cut(s) 415
GluI GCNGC 2 cut(s) 117, 395
HhaI GCGC 1 cut(s) 416
Hin1II CATG 4 cut(s) 314, 318, 329, 429
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HinfI GANTC 3 cut(s) 98, 123, 351
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 4 cut(s) 22, 82, 281, 314
Hsp92II CATG 4 cut(s) 314, 318, 329, 429
HspAI GCGC 1 cut(s) 414
Kzo9I GATC 2 cut(s) 93, 166
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 62, 105, 114
Lsp1109I GCAGC 2 cut(s) 128, 406
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 95, 168
MboI GATC 2 cut(s) 93, 166
MboII GAAGA 2 cut(s) 176, 358
MhlI GDGCHC 2 cut(s) 147, 323
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 6 cut(s) 99, 106, 158, 333, 340, 365
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 286
NdeII GATC 2 cut(s) 93, 166
NlaIII CATG 4 cut(s) 314, 318, 329, 429
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 98, 351
PkrI GCNGC 2 cut(s) 118, 396
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 117, 395
Sau3AI GATC 2 cut(s) 93, 166
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 2 cut(s) 147, 323
SetI ASST 2 cut(s) 150, 399
SmiMI CAYNNNNRTG 1 cut(s) 286
SspI AATATT 2 cut(s) 180, 307
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 2 cut(s) 98, 351
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 116, 394
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 246, 299
TspRI CASTG 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.