Rh6CG024400

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000376
Physical Location & Seq
Reverse (-)
2222664 .. 2223893
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG024400.1

Sequence Viewer

Length: 1230 bp
ATGTGGATTACAACTGTAAGCTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCCCTTGTTAGTGGCAATGAGGGTGTATTTGTTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAAGGCTTACGCTTGGAAAGATGGATTTCGTGATTTTAGAAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGGAGTAATCCTGGTTGGACAAGAAACTTACTGAAGCTTGTTGAAGATGTATTATCTCATGGGCTATATCACCCGCTCCACATTGACGGGTTTTTGAGCTTATCCAGTACTGATAAAGACGTCACATCCAATGATGGGAAGTCAAAAGATTCCAAAACAATCAACCAGGGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCATTTGCAGCAGAAAGCATAGGAGTATTGTTTCACTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACCGCAAGTACCAAAATGATGGGGAAAAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAACGTCTACGATGTCGTCTGAGAGTCGTATTGTTGAAAAACATTATTGCTCAACTAGTTTCAATCCAGAAACACGAAAGTCGCTTCACAATTTTTTTTTTTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGATGGATGTTCATTGCACATTTAAAGCTATAAATAATGTACTTTCGGTCTTTATGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTGTCTTAATTTCTTGAAGAGGGTTTATAATATCATCATCTCATTGTCCTCCGATTTAATTCAGCTGTCAGTTACACACTCAGATAGTTTTACTCTAATAGCAAGTGAGGTACTTTCTGCCGTGGGCTATCTTTTGGAAATTGAATATGATGTTCTAGAGAATGATCTGGTAAGCTTGTGGTTAATGATGCTCTCTTACTTGGCCATTGGGGTTTCTTTGGTGGATTCTCTGGATAGATGCTCATTATTCTCCAAGATAACAGATACTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTTAGTAGAATGCTCTTTGATCAAGCATTTTCCATCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

409

Amino Acids

46.08

Weight (kDa)

5.96

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AatII GACGTC 1 cut(s) 354
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 608
AciI CCGC 2 cut(s) 305, 537
AcoI YGGCCR 1 cut(s) 1083
AcsI RAATTY 2 cut(s) 44, 435
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 5 cut(s) 340, 544, 711, 822, 993
AfeI AGCGCT 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 7 cut(s) 275, 573, 638, 664, 755, 898, 1025
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 4 cut(s) 125, 241, 396, 1185
Alw26I GTCTC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 1148
Aor51HI AGCGCT 1 cut(s) 531
AoxI GGCC 2 cut(s) 772, 1083
ApaI GGGCCC 1 cut(s) 776
ApeKI GCWGC 2 cut(s) 443, 461
ApoI RAATTY 2 cut(s) 44, 435
AseI ATTAAT 1 cut(s) 1160
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 2 cut(s) 772, 773
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 776
BalI TGGCCA 1 cut(s) 1085
BanII GRGCYC 1 cut(s) 776
BbvI GCAGC 2 cut(s) 430, 473
BccI CCATC 5 cut(s) 149, 359, 547, 778, 1229
BceAI ACGGC 1 cut(s) 986
BciT130I CCWGG 4 cut(s) 127, 243, 398, 1187
BclI TGATCA 2 cut(s) 499, 1207
BcoDI GTCTC 1 cut(s) 215
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 2 cut(s) 657, 1037
BfmI CTRYAG 1 cut(s) 1171
BfoI RGCGCY 1 cut(s) 533
BisI GCNGC 2 cut(s) 444, 462
BlsI GCNGC 2 cut(s) 445, 463
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 4 cut(s) 127, 243, 398, 1187
BmgT120I GGNCC 2 cut(s) 772, 773
BmiI GGNNCC 2 cut(s) 723, 774
BmrFI CCNGG 4 cut(s) 127, 243, 398, 1187
BmsI GCATC 6 cut(s) 208, 226, 856, 1059, 1109, 1142
BplI GAGNNNNNCTC 2 cut(s) 854, 886
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 3 cut(s) 134, 206, 755
BsaHI GRCGYC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 34, 397, 1002
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 336, 1153
Bse3DI GCAATG 2 cut(s) 79, 793
BseBI CCWGG 4 cut(s) 127, 243, 398, 1187
BseDI CCNNGG 3 cut(s) 34, 397, 1002
BseGI GGATG 4 cut(s) 356, 793, 871, 1157
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 2 cut(s) 79, 793
BseMII CTCAG 4 cut(s) 36, 612, 864, 975
BseNI ACTGG 2 cut(s) 336, 1153
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 2 cut(s) 430, 473
BshFI GGCC 2 cut(s) 774, 1085
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 2 cut(s) 457, 1203
BsnI GGCC 2 cut(s) 774, 1085
Bso31I GGTCTC 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 776
Bsp143I GATC 4 cut(s) 499, 738, 1045, 1207
BspACI CCGC 2 cut(s) 305, 537
BspANI GGCC 2 cut(s) 774, 1085
BspCNI CTCAG 4 cut(s) 35, 613, 865, 974
BspLI GGNNCC 2 cut(s) 723, 774
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 2 cut(s) 79, 793
BsrI ACTGG 2 cut(s) 336, 1153
BssECI CCNNGG 3 cut(s) 34, 397, 1002
BssMI GATC 4 cut(s) 499, 738, 1045, 1207
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 4 cut(s) 127, 243, 398, 1187
Bst4CI ACNGT 2 cut(s) 16, 53
Bst6I CTCTTC 1 cut(s) 893
BstACI GRCGYC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 452
BstDEI CTNAG 5 cut(s) 22, 621, 759, 873, 961
BstDSI CCRYGG 1 cut(s) 1002
BstF5I GGATG 4 cut(s) 356, 793, 871, 1157
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 4 cut(s) 502, 741, 1048, 1210
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 499, 738, 1045, 1207
BstMWI GCNNNNNNNGC 6 cut(s) 187, 196, 452, 461, 536, 730
BstNI CCWGG 4 cut(s) 127, 243, 398, 1187
BstSCI CCNGG 4 cut(s) 125, 241, 396, 1185
BstSFI CTRYAG 1 cut(s) 1171
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 2 cut(s) 430, 473
BstXI CCANNNNNNTGG 2 cut(s) 230, 553
BsuRI GGCC 2 cut(s) 774, 1085
BtgI CCRYGG 1 cut(s) 1002
BtsCI GGATG 4 cut(s) 356, 793, 871, 1157
BtsIMutI CAGTG 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 1148
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 772, 773
Csp6I GTAC 5 cut(s) 339, 543, 710, 821, 992
CviAII CATG 2 cut(s) 290, 839
CviQI GTAC 5 cut(s) 339, 543, 710, 821, 992
DdeI CTNAG 5 cut(s) 22, 621, 759, 873, 961
DpnI GATC 4 cut(s) 501, 740, 1047, 1209
DpnII GATC 4 cut(s) 499, 738, 1045, 1207
DraI TTTAAA 2 cut(s) 135, 805
EaeI YGGCCR 1 cut(s) 1083
Eam1104I CTCTTC 1 cut(s) 893
EarI CTCTTC 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 776
Eco31I GGTCTC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 125, 241, 396, 1185
EcoT14I CCWWGG 1 cut(s) 34
EcoT22I ATGCAT 2 cut(s) 457, 840
EcoT38I GRGCYC 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 293, 842
FatI CATG 2 cut(s) 289, 838
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 2 cut(s) 499, 1207
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 2 cut(s) 444, 462
FokI GGATG 4 cut(s) 343, 800, 878, 1164
FriOI GRGCYC 1 cut(s) 776
Fsp4HI GCNGC 2 cut(s) 444, 462
FspBI CTAG 2 cut(s) 657, 1037
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 444, 462
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 2 cut(s) 774, 1085
HhaI GCGC 1 cut(s) 532
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 2 cut(s) 293, 842
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 1178
HindII GTYRAC 1 cut(s) 1178
HindIII AAGCTT 2 cut(s) 266, 1054
HinfI GANTC 4 cut(s) 380, 524, 625, 1106
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 609, 1178
Hpy188I TCNGA 4 cut(s) 622, 874, 934, 964
Hpy188III TCNNGA 8 cut(s) 29, 164, 223, 668, 752, 895, 1037, 1112
Hpy8I GTNNAC 2 cut(s) 609, 1178
HpyAV CCTTC 2 cut(s) 425, 560
HpyCH4III ACNGT 2 cut(s) 16, 53
HpyCH4IV ACGT 2 cut(s) 351, 605
HpyCH4V TGCA 7 cut(s) 199, 217, 446, 455, 461, 798, 838
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 196, 452, 461, 536, 730
HpyF3I CTNAG 5 cut(s) 22, 621, 759, 873, 961
HpySE526I ACGT 2 cut(s) 351, 605
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 2 cut(s) 293, 842
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 2 cut(s) 499, 1207
Kzo9I GATC 4 cut(s) 499, 738, 1045, 1207
LmnI GCTCC 4 cut(s) 186, 312, 721, 878
Lsp1109I GCAGC 2 cut(s) 430, 473
LweI GCATC 6 cut(s) 208, 226, 856, 1059, 1109, 1142
MaeI CTAG 2 cut(s) 657, 1037
MaeII ACGT 2 cut(s) 351, 605
MaeIII GTNAC 2 cut(s) 352, 952
MalI GATC 4 cut(s) 501, 740, 1047, 1209
MbiI CCGCTC 1 cut(s) 307
MboI GATC 4 cut(s) 499, 738, 1045, 1207
MboII GAAGA 3 cut(s) 287, 596, 910
MhlI GDGCHC 1 cut(s) 776
MlsI TGGCCA 1 cut(s) 1085
MluNI TGGCCA 1 cut(s) 1085
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 1085
Mph1103I ATGCAT 2 cut(s) 457, 840
MscI TGGCCA 1 cut(s) 1085
MseI TTAA 8 cut(s) 134, 507, 804, 888, 938, 1064, 1160, 1228
Msp20I TGGCCA 1 cut(s) 1085
MspA1I CMGCKG 1 cut(s) 946
MspR9I CCNGG 4 cut(s) 127, 243, 398, 1187
Mva1269I GAATGC 2 cut(s) 457, 1203
MvaI CCWGG 4 cut(s) 127, 243, 398, 1187
MwoI GCNNNNNNNGC 6 cut(s) 187, 196, 452, 461, 536, 730
NdeII GATC 4 cut(s) 499, 738, 1045, 1207
NlaIII CATG 2 cut(s) 293, 842
NlaIV GGNNCC 2 cut(s) 723, 774
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 2 cut(s) 457, 840
PctI GAATGC 2 cut(s) 457, 1203
PfeI GAWTC 3 cut(s) 380, 524, 1106
PkrI GCNGC 2 cut(s) 445, 463
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PshBI ATTAAT 1 cut(s) 1160
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 4 cut(s) 125, 241, 396, 1185
PspGI CCWGG 4 cut(s) 125, 241, 396, 1185
PspN4I GGNNCC 2 cut(s) 723, 774
PspOMI GGGCCC 1 cut(s) 772
PspPI GGNCC 2 cut(s) 772, 773
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 1 cut(s) 1148
PvuII CAGCTG 1 cut(s) 946
RsaI GTAC 5 cut(s) 340, 544, 711, 822, 993
RsaNI GTAC 5 cut(s) 339, 543, 710, 821, 992
SaqAI TTAA 8 cut(s) 134, 507, 804, 888, 938, 1064, 1160, 1228
SatI GCNGC 2 cut(s) 444, 462
Sau3AI GATC 4 cut(s) 499, 738, 1045, 1207
Sau96I GGNCC 2 cut(s) 772, 773
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 4 cut(s) 127, 243, 398, 1187
SduI GDGCHC 1 cut(s) 776
SfaNI GCATC 6 cut(s) 208, 226, 856, 1059, 1109, 1142
SfcI CTRYAG 1 cut(s) 1171
SmlI CTYRAG 3 cut(s) 113, 185, 734
SmoI CTYRAG 3 cut(s) 113, 185, 734
SpeI ACTAGT 1 cut(s) 656
SsiI CCGC 2 cut(s) 305, 537
SspMI CTAG 2 cut(s) 657, 1037
StyD4I CCNGG 4 cut(s) 125, 241, 396, 1185
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 16, 53
TaiI ACGT 2 cut(s) 354, 608
TaqII GACCGA 1 cut(s) 817
TatI WGTACW 3 cut(s) 338, 709, 820
TfiI GAWTC 3 cut(s) 380, 524, 1106
Tru1I TTAA 8 cut(s) 134, 507, 804, 888, 938, 1064, 1160, 1228
Tru9I TTAA 8 cut(s) 134, 507, 804, 888, 938, 1064, 1160, 1228
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 443, 461
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 582, 782, 855
TspRI CASTG 1 cut(s) 58
VspI ATTAAT 1 cut(s) 1160
XapI RAATTY 2 cut(s) 44, 435
XbaI TCTAGA 1 cut(s) 1036
XmiI GTMKAC 1 cut(s) 608
XspI CTAG 2 cut(s) 657, 1037
ZraI GACGTC 1 cut(s) 352
ZrmI AGTACT 1 cut(s) 340
Zsp2I ATGCAT 2 cut(s) 457, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.