MD10G1117700.v1.1

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000376
Physical Location & Seq
Forward (+)
19508822 .. 19510576
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1117700.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGATAGGCAATACTCGGTTGACCTGTTTTCTGCCTGCTGCCGGTTGTTGCATAATGTTCTGAAGCATCACAAAAGTGAATGTGAATGGTGCGTTGCTACACTTGAAGCTTCTGTTCGTGTACTTCTTCATTGTTTGGAGACGGTGGACGCTGATGCAGTCGTCAAGAAAGGTTTCTTTTCATGGGAAGTGGCTGAGGGAGTCAAATGTGCTGGTAGTCTCCGAAGGATTCACAAAGAGATAAGACATCAAAAGGAAGTCTTTGGTCCGCATTGTGCCCAATTTTTATCCAATTACATATGGATTTATTCAGGATATGGCCCCTGTAAAACAGGCATCAAAAGGGAAATAGACGAAGCTCTAAGACCAGGTGTGTACGCATTAATAGATACTAGCTCGCCAGATGATCTTCAACGTCTTCATACCATATTTGGGGGTCCTTGCAGAAACACCTTGGCAACTCTAAAACATGATTACGAACTCAATTTCCAATACCAGGGAAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

170

Amino Acids

19.29

Weight (kDa)

7.6

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 7 - 168 5.7e-33 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30150 AT4G30150
fragaria_vesca FvH4_2g02080 FvH4_2g02080
malus_domestica MD05G1115300.v1.1 MD10G1117200.v1.1 MD10G1117300.v1.1 MD10G1117400.v1.1 MD10G1117500.v1.1 MD10G1117600.v1.1 MD10G1117700.v1.1
prunus_persica Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1 Prupe.8G159900_v2.0.a1
pyrus_communis pycom05g10980 pycom10g10170
rosa_chinensis RchiOBHm_Chr2g0118221 RchiOBHm_Chr6g0244891 RchiOBHm_Chr6g0244901 RchiOBHm_Chr6g0244911 RchiOBHm_Chr6g0244921 RchiOBHm_Chr6g0244931 RchiOBHm_Chr6g0244961 RchiOBHm_Chr6g0244971 RchiOBHm_Chr6g0245301 RchiOBHm_Chr6g0245311 RchiOBHm_Chr6g0245351 RchiOBHm_Chr6g0245361 RchiOBHm_Chr6g0245441 RchiOBHm_Chr6g0245521 RchiOBHm_Chr6g0245531 RchiOBHm_Chr6g0245571
rosa_laevigata RLG00000015303
rosa_multiflora Rmu_sc0000471.1_g000006 Rmu_sc0000471.1_g000007 Rmu_sc0000471.1_g000008 Rmu_sc0001288.1_g000012 Rmu_sc0001925.1_g000002 Rmu_sc0002202.1_g000009 Rmu_sc0002202.1_g000016 Rmu_sc0002202.1_g000017 Rmu_sc0002202.1_g000019 Rmu_sc0002202.1_g000020 Rmu_ssc0000087.1_g000055 Rmu_ssc0000087.1_g000056
rosa_roxburghii Rroxscaffold_3G00242140 Rroxscaffold_7G00215270
rosa_rugosa Rorug05G0511800 Rorug05G0513500 Rorug05G0513900 Rorug05G0514000 Rorug05G0514200 Rorug05G0514400
rosa_samantha Rh1AG142300 Rh1DG147200 Rh6AG026300 Rh6AG026400 Rh6AG026500 Rh6AG028900 Rh6AG029000 Rh6AG029100 Rh6AG029200 Rh6AG029300 Rh6AG029400 Rh6AG029500 Rh6BG025200 Rh6CG020200 Rh6CG020300 Rh6CG020400 Rh6CG023100 Rh6CG023300 Rh6CG023500 Rh6CG023800 Rh6CG024100 Rh6CG024200 Rh6CG024400 Rh6CG024700 Rh6CG024800 Rh6CG025200 Rh6CG025400 Rh6CG025600 Rh6CG025700 Rh6CG025800 Rh6CG025900 Rh6CG026000 Rh6DG020800 Rh6DG020900 Rh6DG021000 Rh6DG023100 Rh6DG023300 Rh6DG023500 Rh6DG023700 Rh6DG023900 Rh6DG024200 Rh6DG024500 Rh6DG024700 Rh6DG024900 Rh6DG025000 Rh6DG025200 Rh6DG025300 Rh6DG025400
rosa_wichuraiana Rw2G021630 Rw2G021750 Rw6G002430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 2 cut(s) 123, 377
AfiI CCNNNNNNNGG 3 cut(s) 42, 432, 496
AgsI TTSAA 2 cut(s) 107, 413
AjnI CCWGG 2 cut(s) 367, 495
AleI CACNNNNGTG 1 cut(s) 75
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 3 cut(s) 110, 359, 396
AluI AGCT 3 cut(s) 110, 359, 396
Alw26I GTCTC 2 cut(s) 134, 224
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 39
AseI ATTAAT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 266, 320, 437
AvaII GGWCC 2 cut(s) 266, 437
BaeGI GKGCMC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 410
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 369, 497
BcoDI GTCTC 2 cut(s) 134, 224
BfaI CTAG 1 cut(s) 393
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 369, 497
Bme18I GGWCC 2 cut(s) 266, 437
BmgT120I GGNCC 3 cut(s) 266, 320, 437
BmiI GGNNCC 2 cut(s) 322, 438
BmrFI CCNGG 2 cut(s) 369, 497
BmsI GCATC 3 cut(s) 76, 145, 345
BpiI GAAGAC 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 453, 496
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 432, 496
Bse118I RCCGGY 1 cut(s) 42
BseBI CCWGG 2 cut(s) 369, 497
BseDI CCNNGG 2 cut(s) 453, 496
BseLI CCNNNNNNNGG 3 cut(s) 42, 432, 496
BseMII CTCAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 42, 432, 496
BsmAI GTCTC 2 cut(s) 134, 224
BsmBI CGTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 322, 438
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 453, 496
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 369, 497
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 37, 398
BstDEI CTNAG 2 cut(s) 195, 362
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 2 cut(s) 134, 224
BstMBI GATC 1 cut(s) 406
BstNI CCWGG 2 cut(s) 369, 497
BstSCI CCNGG 2 cut(s) 367, 495
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 410
BsuRI GGCC 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 37, 398
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 266, 320, 437
CseI GACGC 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 2 cut(s) 122, 376
CviAII CATG 2 cut(s) 183, 470
CviJI RGCY 5 cut(s) 110, 194, 321, 359, 396
CviKI_1 RGCY 5 cut(s) 110, 194, 321, 359, 396
CviQI GTAC 2 cut(s) 122, 376
DdeI CTNAG 2 cut(s) 195, 362
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 266, 437
Eco57I CTGAAG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 367, 495
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 2 cut(s) 186, 473
FaiI YATR 8 cut(s) 54, 184, 299, 301, 318, 423, 428, 471
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 182, 469
FauNDI CATATG 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 393
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 186, 473
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 2 cut(s) 201, 229
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 4 cut(s) 22, 122, 148, 376
Hpy188I TCNGA 2 cut(s) 63, 224
Hpy188III TCNNGA 2 cut(s) 166, 312
Hpy8I GTNNAC 4 cut(s) 22, 122, 148, 376
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 52, 158, 444
HpyF3I CTNAG 2 cut(s) 195, 362
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 186, 473
Kzo9I GATC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 76, 145, 345
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 415
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 3 cut(s) 119, 401, 410
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 3 cut(s) 281, 292, 484
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 369, 497
MvaI CCWGG 2 cut(s) 369, 497
NdeI CATATG 1 cut(s) 299
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 186, 473
NlaIV GGNNCC 2 cut(s) 322, 438
OliI CACNNNNGTG 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 437
PshBI ATTAAT 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 367, 495
PspGI CCWGG 2 cut(s) 367, 495
PspN4I GGNNCC 2 cut(s) 322, 438
PspPI GGNCC 3 cut(s) 266, 320, 437
PspPPI RGGWCCY 1 cut(s) 437
RsaI GTAC 2 cut(s) 123, 377
RsaNI GTAC 2 cut(s) 122, 376
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 3 cut(s) 266, 320, 437
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 369, 497
SduI GDGCHC 1 cut(s) 280
SetI ASST 8 cut(s) 27, 112, 175, 361, 373, 398, 418, 455
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 3 cut(s) 76, 145, 345
SinI GGWCC 2 cut(s) 266, 437
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 281, 292, 484
SsiI CCGC 1 cut(s) 269
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 367, 495
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 418
TasI AATT 3 cut(s) 281, 292, 484
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 3 cut(s) 119, 171, 410
VpaK11BI GGWCC 2 cut(s) 266, 437
VspI ATTAAT 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.